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HIV Sequence Database



Pixel

Purpose: This tool generates an image of an alignment using 1 or more colored pixel(s) for each residue, thus allowing errors in large alignments to be easily seen. See Pixel Explanation.

  Advanced   Basic  
Input
icon Paste your alignment
[Sample Input]
or upload your file
Options
Sequence type Auto-detect    Amino acids    DNA   
icon Color scheme Default    JMol 'shapely'    Se-Al   
icon Show differences relative to reference sequence No   Matches gray   Matches white   Matches white, mismatches red, indels black
icon Reference sequence First sequence    
icon Plot size Automatically compute.  Set residue scale x pixels
Or set dimensions x inches
icon Show sequence names    Font size
icon Show scale bar    Scale bar size
icon Margins inches
last modified: Thu Jun 9 16:37 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
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