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HIV sequence database


Purpose: This tool generates an image of an alignment using 1 or more colored pixel(s) for each residue, thus allowing errors in large alignments to be easily seen. See Pixel Explanation.

  Advanced   Basic  
icon Paste your alignment
[Sample Input]
or upload your file
Sequence type Auto-detect    Amino acids    DNA   
icon Color scheme Default    JMol 'shapely'    Se-Al   
icon Show differences relative to reference sequence No   Matches gray   Matches white, mismatches red, indels black
icon Reference sequence First sequence    
icon Plot size Automatically compute.  Set residue scale x pixels
Or set dimensions x inches
icon Show sequence names    Font size
icon Show scale bar    Scale bar size
icon Margins inches
last modified: Tue Jul 12 11:55 2016

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