HIV Databases HIV Databases home HIV Databases home
HIV sequence database

HCV Sequence Alignment from Li et al. 2012

This zip archive contains a fasta-formatted file of 2922 aligned half- and quarter-genome HCV sequences from 17 acute and 14 chronically infected study participants. The alignment file format is Nexus with MacClade extensions.

Click Here to Download Alignment

Hui Li, Mark B. Stoddard, Shuyi Wang, Lily M. Blair, Elena E. Giorgi, Erica H. Parrish, Gerald H. Learn, Peter Hraber, Paul A. Goepfert, Michael S. Saag, Thomas N. Denny, Barton F. Haynes, Beatrice H. Hahn, Ruy M. Ribeiro, Alan S. Perelson, Bette T. Korber, Tanmoy Bhattacharya, and George M. Shaw.

Elucidation of Hepatitis C Virus Transmission and Early Diversification by Single Genome Sequencing. In review, 2012.

last modified: Wed Jun 13 11:29 2012

Questions or comments? Contact us at

Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health