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HIV sequence database



The example below shows the format to specify subtypes for SUDI using a text file. This example can be copy/pasted in along with the Sample Input for testing.

U:	
U_CM.MP535C

A:	
A_UG.U455
A_SE.UG8891
A_SE.TZ8538
A_SE.UG6594
A_KE.Q2317
A_SE.UG7535
A_SE.SO7253
A_UG.92UG037
A_SE.SE8131

B:
B_US.DH123
B_GB.MANC
B_CN.RL42
B_GA.OYI
B_GB.CAM1
B_US.NY5CG
B_FR.HXB2R
B_NL.ACH320A
B_US.SF2CG
B_US.AD8
B_ES.89SP061
B_TW.LM49
B_US.WCIPR18
B_DE.D31
B_AU.MBC200
B_US.YU2
B_US.JRCSF
B_US.MN
B_AU.MBC925
B_US.BCSG3
B_US.896
B_DE.HAN2
B_US.WEAU160
B_US.RF
B_US.WR27

C:
C_ET.ETH2220
C_BR.92BR025
C_BW.960402
C_BW.961104
C_BW.9615C02
C_BW.9601B03
C_IN.1999
C_IN.21068
C_IN.1905
C_IN.1904
C_IN.11246
C_BW.960502
C_BW.9616B01
C_BW.961210
C_BW.9617B03

D:
D_UG.94UG114
D_ZR.NDK
D_ZR.ELI
D_ZR.Z2Z6
D_ZR.84ZR085

F1:
F1_BR.93BR020
F1_FI.FIN9363
F1_BE.VI850
F1_FR.MP411

F2:
F2_CM.MP255C
F2_CM.MP257C

G:
G_BE.DRCBL
G_NG.92NG083
G_SE.SE6165
G_FI.HH87932

H:
H_BE.VI991
H_BE.VI997
H_CF.90CF056

J:
J_SE.SE91733
J_SE.SE92809
last modified: Wed Nov 29 14:34 2017


Questions or comments? Contact us at seq-info@lanl.gov.

 
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