SUDI Example Alignment

Below is an example of an IG formatted alignment. The Outgroup must be
labeled as such and come first! All unknown sequences need to be labeled 
U_seqID, where seqID represents the sequence name.


;
OUTGROUP
GCGGGGGCTCTTTTTGAGGGGAGAGAAGCTAGATACATGGGAAAGTATCAGCTTCGGCCCGGTGGCAAGA
AAAAGTACATGATAAAACATCTGGTTTGGGCAAGATCGGAGCTGCAGCGTTTTGCGCTCAGCTCCTCCCT
TCTAGAAACATCAGAAGGTTGTGAAAAGGCTATCCATCAATTGAGCCCTTCCATAGAATAAGATCCCCTG
AAATAAATCTTTGTTTAACACCATTTGTGTTCTGTGGTGCGTACATAAAGGGGAAAAGATAAAAGACACA
;
U_3
GCGAGAGCTCATATTAAGCGGGGGAAAATTAGATGCATGGGAGAAAATTCGTTAAGGCCAGGGGGAAAGA
AACAATATAGAATGAAACATCTAGTATGGGCAAGCAGAGAGCTAGAAAGATTCGCAGTTAACCCTGGCCT
TTTAGAAACAGCAGAGGGGTGTCAACAAATACTGGAACAGTTACAACCAGCTCTCAAACAGGATCAGAAG
AACTTAATCATTATATAATACAGTAGCAACCCTTTATTGTGTACATCAAAGGATAGATGTAAGAGACACC
;
A_KE.Q2317
GCGAGAGCTCATATTAAGCGGGGGAAAATTCGATGCATGGGAGAAAATTCGTTAAGGCCAGGGGGAAAGA
AAAAATATAGAATGAAGCATCTAATATGGGCAAGCAGGGAGCTGGACAGATTTGCACTTAACCCTAGCCT
TTTAGAAACAGCAGACGGATGTCAACAAATAATGGAAAAATTACAACCAGCTCTCAAACAGGAACAGAAG
AAATAAATCATTATTTAATACTGTAGCAACCCTCTATTGTGTACATCAACGGATAGATGTAAAAGACACC
;
A_SE.UGSE8891
GCGAGAGCTCAAATTAAGTGGGGAAAAAAAAGATGCTTGGGAGAAAATGCGTTAAGGCCAGGGGGAAAGA
AAAAATATAAACTGAAACATATGGTATGGGCAAGAAGGGAGCTGGAAAAATCCGCACTTAACCCTAGCCT
TTTAGAAACAACAGAAGGATGTCAACAAATAATGGATAAATTACAACCAGCTCTCAGACAGGAACAGAAG
AACTTAATCACTATATAATACAGTAGCAACCCTCTATTGCGTACATCAAAAGATAGCTGTAAAAGACACC
;
A_UG.U455
GCGAGAGCTCATATTAAGCGGGAAAAAATTAGATTCATGGGAGAAAATTCGTTAAGGCCAGGGGGAAACA
AAAAATATAGACTGAAACATTTAGTATGGGCAAGCAGGGAGCTGGAAAAATTCACACTTAACCCTGGCCT
TTTAGAAACAGCAGAAGGATGTCAGCAAATACTGGGACAATTACAACCAGCTCTCCAACAGGAACAGAAG
AACTTAATCATTATATAATACAGTAGCAGTCCTCTATTGTGTACATCAAAGGATAGATGTAAAAGACACC
;
B_AU.MBC925
GCGAGAGCTCATATTAAGCGGGGGAGAATTAGATAGATGGGAAAGAATTCGTTAAGGCCAAGGGGAAAGA
AAAAATATCAATTAAAACATATAGTATGGGCAAGCAGGGAGCTGGAACGATTCTCAGTTAATCCTGGCCT
GTTAGAAACATCAGAAGGCTGTAGACAAATACTGAGACAGCTACAACCAGCCCTTCAACAGGATCAGAAG
ACTTTAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGGTAAAAGACACC
;
B_CN.RL42
GCGAGAGCTCATATTAAGCGGGGGACAATTAGATAGATGGGAAAAAATTCGTTAAGGCCAGGGGGAAAGA
AAAAATATAGATTAAAACATCTAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCT
GTTAGAAACATCAGAAGGCTGTAGACAAATACTGGAACAGCTACAACCAGCCCTTCAACAGGATCAGAAG
AACTTAATCATTATTCAATACAGTAGCAACCCTCTATTGTGTGCATCTAAGGATAGAGATAAAAGACACC
;
B_DE.HAN2
GCGAGAGCTCATATTAAGCGGGGGAGAATTAGACAAATGGGAAAAAATTCGTTAAGGCCAGGGGGAAAGA
AAAAATATCAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCT
GTTAGAAACATCAGAAGGCTGTAGACAGATAATGGGACAGCTACAACCGTCCCTTCAACAGGATCAGAAG
AACTTAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACC
;
C_BR.92BR025
GCGAGAGCTCATATTAAGAGGCGGAAAATTAGATGCTTGGGAAAGAATTAATTAAAGCCAGGGGGAAAGA
AACACTATATGATGAAACACCTAGTCTGGGCAAGCAGGGAGCTGGAAAGATTTGCACTTGACCCTGGCCT
TTTAGAGACATCCGAAGGCTGTAAACAAATAATGAAACAGCTACAACCAGCTCTTCAACAGGAACAAAGG
AACTTAATCATTACATAATACGGTTGCAACTCTCTATTGTGTACATGAAAAGATAGATGTACGAGACACC
;
C_BW.96BW0402
GCGAGAGCTCATATTAAGAGGGGGAAAATTAGATGCATGGGAAAAAATTAGTTAAGGCCAGGGGGAAAGA
AACAATATAGGATAAAACACCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTTGCACTTAACCCTGGCCT
TTTAGAAACATCAGAAGGCTGTAAACAAATAATACAACAGCTACAACCAGCTCTTCAACAGGAACAGAGG
AACTTAATCATTATTTAACACAGTAGCAACTCTCTATTGTGTACATAAAAAGATAGAGGTACGAGACACC
;
C_ET.ETH2220
GCGAGAGCTCATATTAAGAGGCGAAAAATTAGATGCCTGGGAAAAAATTAATTAAGGCCAGGGGGAAAGA
AACACTATATGCTGAAACACCTAGTCTGGGCAAACAGGGAGCTGGAAAAATTTGCACTTAACCCTGACCT
TTTAGATACATCAGCAGGCTGTAAACAAATAATTAAACAGCTACAACCAGCTCTTCAACAGGAACAGAGG
AACTTAATCATTATTTAATACAGTGGCAACTCTCTATTGTGTACATCAAAAGATAGAGATAAAAGACACC
;
G_BE.DRCBL
GCGAGAGCTCATATTAAGCGGGGGAAAATTAGATGCTTGGGAGAAAATTCGTTGAGGCCAGGGGGAAAGA
AAAGATATAGAATGAAACATTTAGTATGGGCAAGCAGGGAGCTGGACAGATTTGCACTTAACCCTGGCCT
TTTAGAAACAGCAGAAGGTTGTCAAAAAATAATGGCACAGTTGCAACCAGCTCTCCAACAGGAACAGAGG
AGATTAATCACTATTTAATACAGTAGCAACCCTCTATTGTGTACATCAAAAGATAGAGGTAAGAGACACC
;
G_FI.HH87932
GCGAGAGCTCATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGCTGACGCCAGGGGGAAAGA
AAAAATACAGACTGAAACATCTAGTATGGGCAAGCAGAGAGATGGAGAGATTTGCACTTAACCCTGGCCT
TTTAGAAACAGCAGAAGGTTGTCAACAAATAATGAGCCAGTTGCAACCAGCTATCCAACAGGAACAGAGG
AGATTAATCATTATTTAATACAGTAGCAACCCTCTATTGTGTACATCCCAAGATAGAGGTAAAGGACACC
;
G_NG.92NG083
GCGAGAGCTCATATTAAGCGGGGGAAAATTAGATTCTTGGGAAAAAATTCGTTAAGGCCAGGGGGAAGGA
AAAAGTATAAACTAAAACATATAGTATGGGCAAGCAGGGAACTGGGGAGATTTGCACTTAACCGTGACCT
TTTAGAAACAGCAGAAGGTTGTGTGCAAATAATGAAACAGTTGCAACCAGCTCTCTAACAGGAACAGAGG
AGCTTAATCATTATTTAATACAGTAGCAACCCTCTACTGTGTACATCAAAAGATAGAGGTAAAAGACACC
;
G_SE.SE6165
GCGAGAGCTCATATTAACCGGGGGAAAATTAGATGCTTGGGAAAAAATTCGTTGAGGCCAGGGGGAAGGA
AATCATATAAAATAAAACATCTAGTATGGGCAAGCAGGGAGCTGGAGAGATTTGCACTTAACCCTGACCT
TTTAGAAACAGCAGAAGGTTGTCAACAAATAATGAGACAGTTGCAACCATCTCTCCAACAGGAACAGAGG
AAATTAATCATTATATAATGCAGTAGCAACCCTCTATTGTGTACATCAAAGGATAGAGGTAAAAGACACC
;
K_ZR.EQTB11C
GCGAGAGCTCATATTAAGCGGGGGAAAATTAGACAAATGGGAAAAAATTCATTACGGCCAGGGGGAAAGA
AAAAATACAGGCTAAAACATCTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCACTTAACCCTAACCT
TTTAGAGACAGTAGAAGGCTGTCGGCAAATAATAAGACAACTACAACCATCCCTTCAACAGGCTCGGAAG
AGCTTAATCACTATTTAATACAGTAGCAACCCTCTATTGGGTGCATCAAAGTATACAGGTAAGGGACACC