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HIV Sequence Database



HIV Sequence Alignments

Purpose: Premade alignments provide curation and codon alignment to produce cleaner alignments than those you can get directly from our search interfaces. We create several different types of alignments that serve well for a variety of purposes. For details, see Sequence Alignment Help.

Alignment
Choose an alignment
Alignment type
Organism
Region
       
      Start:    End:    (Coordinates: HIV1-HXB2, HIV2-Mac239)
Subtype
DNA/Protein
Year *
Or provide an alignment ID
icon Alignment ID
Options
icon Upload accession file
icon Download accessions Provide list of accessions as an additional file
Format



* Alignments are named for the year in which the sequences were published. For example, “2020” alignments contain sequences published through the end of 2020. The Compendia are published the year after the sequences were published, so the 2008 alignment appears in the 2009 compendium.

** User-defined ranges are clipped from a genome alignment. This option is available only when genome alignments are available .

 
last modified: Thu Mar 14 12:36 2024


Questions or comments? Contact us at seq-info@lanl.gov.

 
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