HIV Sequence Database
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Programs and Tools
Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees Geography Search Interface retrieves HIV sequences based on geographical distribution Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome Tools for working with sequences lists all our online tools, organized by function Alignments
HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments |
Information
HIV Sequence Compendium print or order our annual publication Tutorials and other information unpublished web-based content Links to other HIV/AIDS tools and information About this website
FAQ general information about this website Site Statistics usage information for www.hiv.lanl.gov |
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HIV Molecular Immunology 2016
HIV Molecular Immunology 2016 is now available
online. The PDF version is hypertext enabled and features
clickable table-of-contents, indexes, references and links to
external web sites.
16 June 2017
Neutralizing antibody germline genes
CATNAP (Compile, Analyze and Tally Neutralizing Antibody Panels) now includes germline gene usage, and allows you to select antibodies based on their germline genes. The entry of the germline data is still in progress.
13 June 2017
Retrovirus Integration Database
Wei Shao and colleagues at the NCI are now maintaining a database of retroviral insertion sites (Shao et al., Retrovirology 13:47, 2016), the Retrovirus Integration Database (RID). Its primary focus is HIV integration. We have added a link on our resources page.
12 June 2017
2016 Alignments
The 2016 Web and Filtered Web Alignments are now available online. These curated alignments contain a full range of sequences available through the end of 2016.
10 April 2017
