HIV Sequence Database
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Programs and Tools
Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees Geography Search Interface retrieves HIV sequences based on geographical distribution Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome Tools for working with sequences lists all our online tools, organized by function Alignments
HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments |
Information
HIV Sequence Compendium print or order our annual publication Tutorials and other information unpublished web-based content Links to other HIV/AIDS tools and information About this website
FAQ general information about this website Site Statistics usage information for www.hiv.lanl.gov |
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IQ-TREE interface
IQ-tree is a fast and effective stochastic algorithm for finding ML trees. We have developed a convenient
web server for building trees with this method. A nice feature of this method is the ability to
output a table of site-specific rates of evolution for each position in the alignment.
18 September 2017
IEDB User Workshop 2017
The Immune Epitope Database (IEDB) will hold its 2017 User Workshop on October 25-26, 2017 in Rockville, Maryland. Staff from the LANL HIV Databases will be there to talk about our Immunology Database, Sequence Database, and bioinformatics tools. More information is available at http://workshop.iedb.org/.
18 July 2017
HIV Sequence Compendium 2017
HIV Sequence Compendium 2017 is now available online. The
2017 Compendium is only available online in PDF format.
03 July 2017
