HIV Sequence Database
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Programs and Tools
Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees Geography Search Interface retrieves HIV sequences based on geographical distribution Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome Tools for working with sequences lists all our online tools, organized by function Alignments
HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments |
Information
HIV Sequence Compendium print or order our annual publication Tutorials and other information unpublished web-based content Links to other HIV/AIDS tools and information About this website
FAQ general information about this website |
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Neutralization database: antibody somatic hypermutation data
The CATNAP neutralization database now includes data for the % somatic hypermutation (SHM) or mutational frequency of HIV antibodies. These data can be accessed from both the main CATNAP search and the downloads pages.
01 August 2022
HIV Immunology Database JSON API Update
The JSON API (JavaScript Object Notation - Application
Programming Interface) for the HIV Molecular Immunology Database is
being updated to version v2.0.0. This include an incompatible change
of how variant epitope mutation types are represented.
14 July 2022
Web and Database Programmer Position
We seek a motivated, skilled, and independent computer programmer with experience in web interfaces to develop and maintain database and bioinformatics tools and applications. The primary responsibility of the position will be sustaining and significantly improving the data entry system for the HIV Molecular Immunology Database. This meaningful work has already impacted the lives of tens of millions of people living with HIV. Apply here.
31 May 2022
Immunology Database Lead Scientist Position
We invite applications for a scientist in immunology and epidemiology, and/or bioinformatics and molecular evolution. Our database records the interactions between Immunodeficiency Viruses and the host immune responses, and develops tools to assist immunologists and vaccine design researchers studying the host immune responses to these pandemic lentiviruses. Our NIH-funded databases are part of the Theoretical Biology and Biophysics group at Los Alamos National Laboratory, in the beautiful mountains of northern New Mexico. Apply here.
04 May 2022
