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HIV sequence database

HIV Sequence Database

Programs and Tools

Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees

Geography Search Interface retrieves HIV sequences based on geographical distribution

Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome

Tools for working with sequences lists all our online tools, organized by function


HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments


HIV Sequence Compendium print or order our annual publication

Tutorials and other information unpublished web-based content

Links to other HIV/AIDS tools and information

About this website

FAQ general information about this website

Site Statistics usage information for

How to Cite this Database

Editorial Board


Archived News News

New CATNAP options
The CATNAP (Compile, Analyze and Tally Neutralizing Antibody Panels) suite now provides a Find Names tool that converts HIV-1 antibody and virus aliases to the standard names used in CATNAP. Together with this, the CATNAP tool now allows you to paste or upload "Your list" of antibodies or viruses for analysis. 18 May 2018

2017 Alignments
The 2017 Web and Filtered Web Alignments of HIV-1 and HIV-2 sequences are now available online. These curated alignments contain a full range of sequences available through the end of 2017. 11 April 2018

New option for Variable Region Characteristics
Feature data: Optionally, you can include information about the sequences in your analysis, in order to separately analyze the sequences with/without a particular feature. 08 March 2018

New Feature for Align Multi-tool: Concatenate
This will slice your alignment and/or concatenate two or more alignments (or slices). 27 February 2018

last modified: Mon Oct 31 13:51 2016

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