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HIV sequence database

HIV Sequence Database

Programs and Tools

Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees

Geography Search Interface retrieves HIV sequences based on geographical distribution

Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome

Tools for working with sequences lists all our online tools, organized by function


HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments


HIV Sequence Compendium print or order our annual publication

Tutorials and other information unpublished web-based content

Links to other HIV/AIDS tools and information

About this website

FAQ general information about this website

Site Statistics usage information for

How to Cite this Database

Editorial Board


Archived News News

IEDB User Workshop 2017
The Immune Epitope Database (IEDB) will hold its 2017 User Workshop on October 25-26, 2017 in Rockville, Maryland. Staff from the LANL HIV Databases will be there to talk about our Immunology Database, Sequence Database, and bioinformatics tools. More information is available at 18 July 2017

HIV Sequence Compendium 2017
HIV Sequence Compendium 2017 is now available online. The 2017 Compendium is only available online in PDF format. 03 July 2017

HIV Molecular Immunology 2016
HIV Molecular Immunology 2016 is now available online. The PDF version is hypertext enabled and features clickable table-of-contents, indexes, references and links to external web sites. 16 June 2017

Neutralizing antibody germline genes
CATNAP (Compile, Analyze and Tally Neutralizing Antibody Panels) now includes germline gene usage, and allows you to select antibodies based on their germline genes. 13 June 2017

Retrovirus Integration Database
Wei Shao and colleagues at the NCI are now maintaining a database of retroviral insertion sites (Shao et al., Retrovirology 13:47, 2016), the Retrovirus Integration Database (RID). Its primary focus is HIV integration. We have added a link on our resources page. 12 June 2017

last modified: Mon Oct 31 13:51 2016

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