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HIV sequence database

HIV Sequence Database

Programs and Tools

Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees

Geography Search Interface retrieves HIV sequences based on geographical distribution

Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome

Tools for working with sequences lists all our online tools, organized by function


HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments


HIV Sequence Compendium print or order our annual publication

Tutorials and other information unpublished web-based content

Links to other HIV/AIDS tools and information

About this website

FAQ general information about this website

How to Cite this Database

Editorial Board


Archived News News

Web and Database Programmer Position
We seek a motivated, skilled, and independent computer programmer with experience in web interfaces to develop and maintain database and bioinformatics tools and applications. The primary responsibility of the position will be sustaining and significantly improving the data entry system for the HIV Molecular Immunology Database. This meaningful work has already impacted the lives of tens of millions of people living with HIV. Apply here. 31 May 2022

Immunology Database Lead Scientist Position
We invite applications for a scientist in immunology and epidemiology, and/or bioinformatics and molecular evolution. Our database records the interactions between Immunodeficiency Viruses and the host immune responses, and develops tools to assist immunologists and vaccine design researchers studying the host immune responses to these pandemic lentiviruses. Our NIH-funded databases are part of the Theoretical Biology and Biophysics group at Los Alamos National Laboratory, in the beautiful mountains of northern New Mexico. Apply here. 04 May 2022

Video Tutorials
LANL HIV Database staff recently presented virtual workshops at the Keystone HIV Vaccines & Therapies conference. Links to the video presentations are available on our Tutorials page. 07 April 2022

last modified: Tue Sep 7 15:54 2021

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