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HIV sequence database

HIV Sequence Database

Programs and Tools

Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees

Geography Search Interface retrieves HIV sequences based on geographical distribution

Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome

Tools for working with sequences lists all our online tools, organized by function


HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments


HIV Sequence Compendium print or order our annual publication

Tutorials and other information unpublished web-based content

Links to other HIV/AIDS tools and information

About this website

FAQ general information about this website

How to Cite this Database

Editorial Board


Archived News News

N-Glcosite new function
The N-Glycosite tool can highlight and tally N-linked glycosylation sites in an amino acid sequence. A new functionality can change O-marked glycosylation sites to N. 10 August 2022

Neutralization database: antibody somatic hypermutation data
The CATNAP neutralization database now includes data for the % somatic hypermutation (SHM) or mutational frequency of HIV antibodies. These data can be accessed from both the main CATNAP search and the downloads pages. 01 August 2022

HIV Immunology Database JSON API Update
The JSON API (JavaScript Object Notation - Application Programming Interface) for the HIV Molecular Immunology Database is being updated to version v2.0.0. This include an incompatible change of how variant epitope mutation types are represented. 14 July 2022

Web and Database Programmer Position
We seek a motivated, skilled, and independent computer programmer with experience in web interfaces to develop and maintain database and bioinformatics tools and applications. The primary responsibility of the position will be sustaining and significantly improving the data entry system for the HIV Molecular Immunology Database. This meaningful work has already impacted the lives of tens of millions of people living with HIV. Apply here. 31 May 2022

last modified: Tue Sep 7 15:54 2021

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