HIV Sequence Database
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Programs and Tools
Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees Geography Search Interface retrieves HIV sequences based on geographical distribution Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome Tools for working with sequences lists all our online tools, organized by function Alignments
HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments |
Information
HIV Sequence Compendium print or order our annual publication Tutorials and other information unpublished web-based content Links to other HIV/AIDS tools and information About this website
FAQ general information about this website Site Statistics usage information for www.hiv.lanl.gov |
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GenSig
GenSig, a signature analysis web interface,
is now available online. It can identify genetic signatures in a DNA alignment with associated phenotypic data.
Also we have integrated our signature code into
CATNAP allowing signature analysis to be conducted on-the-fly as new bNAb data is entered into the database.
10 January 2019
Recombinant Analysis PRogram (RAPR)
RAPR is now available
online. The program uses the Wald-Wolfowitz Runs Test to check for
recombination in every triplet in the alignment.
29 November 2018
