HIV Sequence Database
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Programs and Tools
Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees Geography Search Interface retrieves HIV sequences based on geographical distribution Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome Tools for working with sequences lists all our online tools, organized by function Alignments
HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments |
Information
HIV Sequence Compendium print or order our annual publication Tutorials and other information unpublished web-based content Links to other HIV/AIDS tools and information About this website
FAQ general information about this website |
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HIV Immunology Database JSON API
A JSON API (JavaScript Object Notation - Application
Programming Interface) is now available for the HIV Molecular
Immunology Database to retrieve curated epitope and related data from
the database in JSON format, as an alternative to the existing HTML
format. It is fully documented via OpenAPI and allows the contents of
the HIV Immunology Database to be queried and extracted. Data
extraction may be automated for multiple searches and extracted data
may then be manipulated with the user’s choice of programming
language.
19 March 2021
