HIV sequence database
############################################################################### IMPACT OF CLADE, GEOGRAPHY, AND AGE OF THE EPIDEMIC ON HIV-1 NEUTRALIZATION BY ANTIBODIES P Hraber, BT Korber, AS Lapedes, RT Bailer, MS Seaman, H Gao, KM Greene, F McCutchan, C Williamson, JH Kim, S Tovanabutra, BH Hahn, R Swanstrom, MM Thomson, F Gao, L Harris, E Giorgi, N Hengartner, T Bhattacharya, JR Mascola, DC Montefiori. ############################################################################### DatasetS1 This file contains columns, the first 19 of which are as follows: 1. virus = name of the pseudovirus used in the neutralization assay. 2. virus.clade = clade of the pseudovirus assayed, NA if URF or sparsely represented CRF. NB: To see the clades identified within URFs, please see DatasetS2.txt; the second field of each sequence name contains this information. 3. virus.stage = infection stage of virus: E=early (Fiebig I-IV); I=intermediate (V-Early VI); L=Late (Fiebig VI-Chronic); U=unknown. 4. plasma = name of plasma assayed. 5. plasma.clade = clade of plasma assayed (NA where URF or 35 of 205 plasma envs did not amplify). 6. match.state = 1 if both plasma & virus are CRF07, 2 if both plasma & virus are CRF01, 3 if plasma & virus match in other clades (including C × 07), 4 if unmatched, NA if either clade was URF/NA. 7. is.screened.plasma = indicates plasma was non-randomly selected for enhanced neutralization activity. 8. is.lowtiter.plasma = to emulate prescreening bias, ‘TRUE’ identifies 58 plasmas with geometric mean ID50 titer < 20. 9. similarity = 100% × (1 – Hamming Distance) from alignment with gap-rich regions excised, or NA where 35 of 205 plasma envs did not amplify. 10. id50 = assay result; plasma concentration at which half the virus is inhibited from cell entry. 11. id80 = assay result; plasma concentration at which 80% of virus is inhibited from cell entry. 12. pAUC = (aka positive area under the curve) integral of the titration curve, normalized against the largest integral. Curves are logistic functions fitted to the empirical assay results at 5 points. 13. log10.id50 = log-transformed assay result. 14. log10.id80 = log-transformed assay result. 15. sqrt.pAUC = transformed integral of the titration curve. 16. id50residual = difference between observed and expected titer, in log10 space. 17. id50estimate = expected titer, i.e. log10(row.gm.titer) + log10(col.gm.titer) - log10(overall.gm.titer); gm = geometric mean. 18. pAUCresidual = difference between observed and expected pAUC, in square-root space. 19. pAUCestimate = expected/approximated pAUC. Then follow 30 (2 × 5 × 3) tab-separated columns giving loop length, number of PNGs, and net charge (or NA where 35 of 205 plasma envs could not be amplified): foreach (p=plasma, i.e. columns 20-34; v=virus, i.e. columns 35-49) foreach (V1, e.g. columns 20-22, V2–cols 23-25, V4–cols 26-28, V5–cols 29-31, V1V2–cols 32-34) then length, glycos, netchg; i.e.: 20-22. pV1length, pV1glycos, pV1netchg 23-25. pV2length, pV2glycos, pV2netchg 26-28. pV4length, pV4glycos, pV4netchg 29-31. pV5length, pV5glycos, pV5netchg 32-34. pV1V2length, pV1V1glycos, pV1V2netchg 35-37. vV1length, vV1glycos, vV1netchg 38-40. vV2length, vV2glycos, vV2netchg 41-43. vV4length, vV4glycos, vV4netchg 44-46. vV5length, vV5glycos, vV5netchg 47-49. vV1V2length, vV1V2glycos, vV1V2netchg Notes * Many id50 and id80 values are censored, indicated by constant values of 10. * Values of ‘NA’ for virus.clade or plasma.clade could also indicate URF or rare CRF. Please use the second field in DatasetS2.txt for this information, if needed. * The values not pseudoreplicated are similarity, id50, id80, pAUC, id50residual, id50esimate, pAUCresidual, and pAUCestimate. * That is, the plasma and virus values repeat (200×) for each plasma or virus. * V1V2 is the sum from combining values for the two V-loop regions. * Names of three viruses and 28 plasmas contain a space, so parse wisely. ############################################################################### DatasetS2.fasta Fields in sequence names are separated by the underscore character ("_"). The number of sequence name fields varies. In each case, the subtype is given in the second field. For brevity, CRF names are reduced to 2 digits, e.g. 07 = CRF07_BC. There are 3 categories of sequence, indicated by first character in sequence name: "R" Subtype Reference sequence, "P" Env sequence from NSDP Plasma, "V" Pseudovirus sequence. 1. "R" Subtype Reference env sequences. The 39 "R" sequences have 6-8 fields: Field 1: R (for Reference) Field 2: Subtype Field 3: ISO country code (2 letters) Field 4: Year isolated (2 digits) A varying number of intervening fields (1-3) gives the sequence common name. The last field gives GenBank accession number, e.g. R_B_83_FR_HXB2_K03455. 2. "P" Plasma env sequences. The 171 "P" sequences have 3 to 5 fields: Field 1: P Field 2: Subtype/Clade (Multiple clades are listed for URF sequences.) Field 3: Genbank accession number Fields 4+: Anonymous identifier of the plasma donor 3. "V" Pseudovirus env sequences. The 219 "V" sequences have 7 to 10 fields: Field 1: V Field 2: Subtype/Clade (Multiple clades are listed for URF sequences.) Field 3: Virus infection stage: E early, defined Fiebig stage I, II, III, or IV, i.e. pre-Fiebig V I intermediate, taken as Fiebig V through early VI L late, i.e. late (generally >6 months) Fiebig VI or "Chronic" or "AIDS" U unknow), including "early", "acute", and "acute/early" Field 4: Tier classification, where known Field 5: ISO country code (2 letters) Field 6: GenBank accession number Fields 7+: Sequence (isolate) common name NB: The isolate common names have been edited to replace all punctuation and white space with "_" and use "noRev" instead of "(Rev-)", e.g. V_C_T_E_NA_ZA_FJ444103_Ce704809221_1B3. ############################################################################### Following is a list that maps names in this dataset to those in the other: Long name as in DatasetS2,Common name as in DatasetS1 Virus names follow: V_G_L_NA_ES_FJ817370_X1632_S2_B10,X1632_S2_B10 V_AD_I_NA_UG_HM215274_193003_B10,193003_B10 V_B_I_NA_US_AY835434_6101_10,6101.10 V_G_I_NA_ES_EU885763_X1854_c2_10,X1854_C2_10 V_C_I_NA_TZ_HM215318_569_F1_37_10,569-F1_37_10 V_CD_I_NA_TZ_HM215313_401_F1_8_10,401-F1_8_10 V_07_L_2_CN_EF117261_CH119_10,CH119.10 V_AC_I_NA_TZ_HM215288_3103_v3_c10,3103.V3.C10 V_C_I_NA_TZ_HM215289_3168_v4_c10,3168.V4.C10 V_B_I_2_US_EU289193_700010040_C9_4520,700010040_C9_4520 V_07_L_NA_CN_HM215406_CNE20,CNE20 V_A_U_NA_TZ_HM215312_398_F1_F6_20,398-F1_F6_20 V_CD_U_NA_TZ_HM215343_6952_v1_c20,6952.V1.C20 V_B_E_NA_US_EU289198_PRB931_06_TC3_4930,PRB931_06_TC3_4930 V_C_L_NA_CN_HM215411_CNE30,CNE30 V_C_I_NA_TZ_HM215314_410_F2_1_30,410-F2_1_30 V_B_E_NA_US_EU289187_1058_11_B11_1550,1058_11_B11_1550 V_02_L_3_CM_EU513198_T278_50,T278-50 V_B_E_NA_US_EU289188_1059_09_A4_1460,1059_09_A4_1460 V_02_L_2_CM_EU513193_T266_60,T266-60 V_B_E_2_US_EU289183_1006_11_C3_1601,1006_11_C3_1601 V_01_L_NA_TH_JN944661_C2101_c01,C2101.C01 V_01_E_NA_TH_JX512900_620345_c01,620345.C01 V_D_E_NA_UG_JQ361079_231965_c01,231965.C01 V_01_L_NA_TH_JQ352783_R1166_c01,R1166.C01 V_B_E_NA_TH_JQ352781_402288_c01,402288.C01 V_A_E_NA_UG_HM215272_191955_A11,191955_A11 V_B_L_NA_CN_HM215398_CNE11,CNE11 V_B_E_2_IT_AY835445_TRO_11,TRO.11 V_01_L_NA_TH_AF259954_C3347_c11,C3347.C11 V_07_L_NA_CN_HM215407_CNE21,CNE21 V_C_L_NA_ZA_HM215437_TV1_21,TV1.21 V_C_E_2_IN_EF117270_HIV_16936_2_21,HIV-16936-2.21 V_06_L_NA_SN_HM215265_1656_p21,1656.P21 V_B_E_NA_TT_EU289201_SC45_4B5_2631,SC45_4B5_2631 V_C_L_NA_CN_HM215412_CNE31,CNE31 V_02_U_3_CM_EU513185_T257_31,T257-31 V_B_E_NA_US_EU575170_1051_12_TD12_3291,1051_12_TD12_3291 V_A_L_NA_KE_DQ187010_MS208_A1,MS208.A1 V_A_I_NA_RW_HM215434_R18553_E1,R18553_E1 V_C_E_NA_MW_FJ444421_Ce1172_H1,CE1172_H1 V_C_E_2_ZM_DQ388514_ZM249M_PL1,ZM249M.PL1 V_07_L_3_CN_EF117255_CH070_1,CH070.1 V_01_E_NA_CN_HM215386_BJOX025000_01_1,BJOX025000.01.1 V_02_L_NA_SN_HM215293_3273_p21_1,3273.P21.1 V_07_E_NA_CN_HM215380_BJOX019000_02_1,BJOX019000.02.1 V_C_I_2_ZA_DQ411854_Du422_1,DU422.1 V_B_E_NA_TT_AY835440_QH0515_1,QH0515.1 V_AD_I_NA_UG_HM215280_270015_J5_1,270015 _J5_1 V_D_E_NA_UG_HM215270_191821_E6_1,191821_E6_1 V_02_L_NA_SN_HM215264_1105_p17_1,1105.P17.1 V_02_L_NA_SN_HM215281_2705_p18_1,2705.P18.1 V_B_E_NA_US_AY835443_BG1168_1,BG1168.1 V_G_U_NA_ES_EU885761_X1193_c1,X1193_C1 V_AC_U_NA_TZ_HM215330_6540_v4_c1,6540.V4.C1 V_01_E_NA_TH_JN944659_816763_c02,816763.C02 V_C_I_2_ZM_AY423984_ZM53M_PB12,ZM53M.PB12 V_07_L_2_CN_EF117259_CH181_12,CH181.12 V_07_L_3_CN_EF117263_CH115_12,CH115.12 V_C_E_2_ZA_DQ411852_Du156_12,DU156.12 V_07_L_3_CN_EF042692_CH038_12,CH038.12 V_B_L_1B_PE_EF210726_H029_12,H029.12 V_02_L_2_CM_EU513194_269_12,269-12 V_AD_I_NA_TZ_HM215301_3468_v1_c12,3468.V1.C12 V_01_E_NA_TH_JN944655_427299_c12,427299.C12 V_D_U_NA_UG_HM215357_A07412M1_vrc12,A07412M1.VRC12 V_A_E_2_KE_AF407160_Q842_d12,Q842.D12 V_B_E_2_US_EU289190_6240_08_TA5_4622,6240_08_TA5_4622 V_C_E_1B_IN_EF117273_HIV_25925_2_22,HIV-25925-2.22 V_C_I_2_IN_EF117269_HIV_16845_2_22,HIV-16845-2.22 V_A_E_2_KE_AF407158_Q769_d22,Q769.D22 V_B_I_2_TT_AY835439_QH0692_42,QH0692.42 V_C_E_2_IN_EF117266_HIV_001428_2_42,HIV-001428-2.42 V_C_L_NA_CN_HM215416_CNE52,CNE52 V_C_I_NA_MW_FJ443808_Ce703010054_2A2,CE703010054_2A2 V_B_I_2_US_AY835452_CAAN5342_A2,CAAN5342.A2 V_C_E_NA_MW_FJ444395_Ce1086_B2,CE1086_B2 V_B_U_NA_TH_HM215435_RPW_0510_2,RPW-0510.2 V_AC_I_NA_TZ_HM215279_246_F3_C10_2,246-F3_C10_2 V_C_I_2_ZA_DQ411851_Du151_2,DU151.2 V_07_E_NA_CN_HM215364_BJOX002000_03_2,BJOX002000.03.2 V_01_E_NA_CN_HM215373_BJOX010000_06_2,BJOX010000.06.2 V_C_I_NA_TZ_HM215316_541_F1_A7_2,541-F1_A7_2 V_01_U_NA_TH_HM215432_PSR_0508_2,PSR-0508.2 V_AD_U_2_KE_AF407156_Q461_e2,Q461.E2 V_01_L_NA_TH_JN944660_C1080_c03,C1080.C03 V_B_E_NA_US_EU289192_63358_04_P3_4013,63358_04_P3_4013 V_B_E_NA_US_EU576299_BORI_d9_4F8_1413,BORI_D9_4F8_1413 V_A_I_NA_KE_HM215275_21020_13,21020_13 V_01_U_NA_TH_HM215429_KSS_0514_13,KSS-0514.13 V_01_U_NA_TH_HM215436_SPK_0525_13,SPK-0525.13 V_C_I_NA_TZ_HM215354_98_F4_H5_13,98-F4_H5-13 V_C_L_NA_CN_HM215408_CNE23,CNE23 V_B_L_2_PE_EF210735_H080_23,H080.23 V_AC_E_NA_TZ_HM215321_6041_v3_c23,6041.V3.C23 V_B_E_2_US_AY835451_WITO4160_33,WITO4160.33 V_C_I_1B_IN_EF117271_HIV_25710_2_43,HIV-25710-2.43 V_C_E_NA_MW_FJ444437_Ce1176_A3,CE1176_A3 V_C_E_NA_ZA_FJ444103_Ce704809221_1B3,CE704809221_1B3 V_C_E_NA_MW_FJ444215_Ce0393_C3,CE0393_C3 V_C_I_NA_ZA_FJ444047_Ce706010018_2E3,CE706010018_2E3 V_C_E_2_ZA_DQ435682_CAP45_2_00_G3,CAP45.2.00.G3 V_01_E_NA_CN_HM215389_BJOX028000_10_3,BJOX028000.10.3 V_C_E_2_IN_EF117268_HIV_16055_2_3,HIV-16055-2.3 V_B_I_1B_US_AY835438_6535_3,6535.3 V_G_U_NA_ES_FJ817369_P1981_C5_3,P1981_C5_3 V_ACD_I_NA_TZ_HM215260_0815_v3_c3,0815.V3.C3 V_G_L_NA_ES_EU885762_X1254_c3,X1254_C3 V_CD_I_NA_TZ_HM215296_3326_v4_c3,3326.V4.C3 V_C_I_NA_TZ_HM215305_3637_v5_c3,3637.V5.C3 V_01_L_NA_TH_JN944665_R2184_c04,R2184.C04 V_B_L_3_PE_EF210730_H061_14,H061.14 V_02_L_1B_CM_EU513188_242_14,242-14 V_B_L_3_PE_EF210733_H078_14,H078.14 V_C_I_NA_TZ_HM215338_6785_v5_c14,6785.V5.C14 V_C_E_NA_TZ_HM215294_3301_v1_c24,3301.V1.C24 V_C_U_NA_TZ_HM215319_6022_v7_c24,6022.V7.C24 V_02_L_2_CM_EU513184_T255_34,T255-34 V_B_E_2_TT_EU289200_SC05_8C11_2344,SC05_8C11_2344 V_C_I_1B_ZM_AY424138_ZM109F_PB4,ZM109F.PB4 V_AC_E_NA_KE_HM215276_21023_B4,21023_B4 V_C_E_NA_MW_FJ444017_Ce703010228_1C4,CE703010228_1C4 V_C_E_NA_MW_FJ444325_Ce0682_E4,CE0682_E4 V_02_L_2_CM_EU513189_T250_4,T250-4 V_01_E_NA_CN_HM215372_BJOX009000_02_4,BJOX009000.02.4 V_C_E_1B_IN_EF117272_HIV_25711_2_4,HIV-25711-2.4 V_A_E_NA_UG_HM215350_9004SS_A3_4,9004SS_A3_4 V_07_L_2_CN_EF117262_CH117_4,CH117.4 V_B_E_3_IT_AY835444_PVO_4,PVO.4 V_02_L_NA_SN_HM215290_3169_p4,3169.P4 V_B_E_NA_US_EU289199_PRB958_06_TB1_4305,PRB958_06_TB1_4305 V_BC_L_NA_CN_HM215401_CNE15,CNE15 V_C_I_2_ZM_DQ388516_ZM214M_PL15,ZM214M.PL15 V_C_I_NA_TZ_HM215320_6040_v4_c15,6040.V4.C15 V_G_L_NA_ES_EU885765_X2160_c25,X2160_C25 V_CD_U_NA_TZ_HM215329_6480_v4_c25,6480.V4.C25 V_D_E_NA_TZ_HM215283_3016_v5_c45,3016.V5.C45 V_01_L_NA_CN_HM215418_CNE55,CNE55 V_AC_I_NA_TZ_HM215315_477_F3_13_55,477-F3_13_55 V_B_E_NA_US_EU289194_700010058_A4_4375,700010058_A4_4375 V_C_E_NA_ZA_FJ443744_Ce704010042_2E5,CE704010042_2E5 V_01_L_NA_CN_HM215415_CNE5,CNE5 V_C_E_NA_MW_FJ444561_Ce2010_F5,CE2010_F5 V_02_L_2_CM_EU513183_T280_5,T280-5 V_01_E_NA_CN_HM215377_BJOX015000_11_5,BJOX015000.11.5 V_C_I_1B_IN_EF117265_HIV_00836_2_5,HIV-00836-2.5 V_BC_L_NA_CN_HM215402_CNE16,CNE16 V_C_I_NA_TZ_HM215328_6471_v1_c16,6471.V1.C16 V_B_E_1B_US_EU289186_1056_10_TA11_1826,1056_10_TA11_1826 V_B_E_2_US_EU289191_6244_13_B5_4576,6244_13_B5_4576 V_C_I_2_ZM_DQ388517_ZM233M_PB6,ZM233M.PB6 V_B_I_NA_ES_FJ817366_X2278_C2_B6,X2278_C2_B6 V_C_I_NA_MW_FJ443575_Ce703010217_B6,CE703010217_B6 V_B_L_NA_CN_HM215423_CNE6,CNE6 V_D_E_NA_UG_HM215269_191727_F6,191727_F6 V_07_L_3_CN_EF117260_CH120_6,CH120.6 V_C_I_2_ZA_DQ411850_Du123_6,DU123.6 V_C_E_NA_TZ_HM215307_3728_v2_c6,3728.V2.C6 V_C_L_NA_CN_HM215403_CNE17,CNE17 V_C_I_2_ZA_DQ411853_Du172_17,DU172.17 V_A_E_2_KE_AF407152_Q259_d2_17,Q259.D2.17 V_B_E_NA_US_EU575870_9020_20_A13_4607,9020_20_A13_4607 V_02_L_2_CM_EU513195_235_47,235-47 V_B_E_1B_US_EU289184_1012_11_TC21_3257,1012_11_TC21_3257 V_C_I_NA_TZ_HM215278_234_F1_16_57,234-F1-16-57 V_B_E_2_US_EU289202_WEAU_d15_410_5017,WEAU_D15_410_5017 V_BC_L_NA_CN_HM215425_CNE67,CNE67 V_B_E_2_US_AY835449_REJO4541_67,REJO4541.67 V_C_I_1B_ZM_DQ388515_ZM197M_PB7,ZM197M.PB7 V_B_L_2_PE_EF210727_H030_7,H030.7 V_B_L_2_PE_EF210728_H031_7,H031.7 V_G_L_2_CM_EU513190_252_7,252-7 V_B_E_2_US_AY835447_RHPA4259_7,RHPA4259.7 V_BG_U_NA_CH_EU885760_X1100_c7,X1100_C7 V_14_L_NA_PT_EU885766_X2252_c7,X2252_C7 V_BC_L_NA_CN_HM215404_CNE18,CNE18 V_02_L_3_CM_EU513196_T251_18,T251-18 V_B_L_3_PE_EF210729_H035_18,H035.18 V_B_I_NA_US_AY835437_7165_18,7165.18 V_B_E_2_US_AY835448_THRO4156_18,THRO4156.18 V_CD_U_NA_TZ_HM215340_6811_v7_c18,6811.V7.C18 V_01_L_NA_CN_HM215409_CNE28,CNE28 V_C_E_2_IN_EF117274_HIV_26191_2_48,HIV-26191-2.48 V_B_E_3_US_AY835450_TRJO4551_58,TRJO4551.58 V_C_E_NA_ZA_FJ443670_Ce704010083_B8,CE704010083_B8 V_01_L_NA_CN_HM215427_CNE8,CNE8 V_C_E_2_ZA_DQ435683_CAP210_2_00_E8,CAP210.2.00.E8 V_C_E_NA_MW_FJ444612_Ce2103_E8,CE2103_E8 V_07_L_2_CN_EF117258_CH111_8,CH111.8 V_B_E_2_TT_AY835441_SC422661_8,SC422661.8 V_B_U_NA_TH_HM215431_NKR_0512_8,NKR-0512.8 V_02_L_2_CM_EU513182_263_8,263-8 V_07_L_3_CN_EF117264_CH114_8,CH114.8 V_B_L_1B_PE_EF210732_H086_8,H086.8 V_01_L_NA_TH_JQ352782_C4118_c09,C4118.C09 V_07_L_NA_CN_HM215405_CNE19,CNE19 V_A_E_NA_UG_HM215266_191084_B7_19,191084 B7-19 V_B_E_2_US_AY835446_AC10_0_29,AC10.0.29 V_C_U_NA_TH_HM215433_PWJ_0513_39,PWJ-0513.39 V_CD_U_NA_TZ_HM215310_3817_v2_c59,3817.V2.C59 V_B_U_NA_TT_EU577190_TT29P_3A1_2769,TT29P_3A1_2769 V_B_E_NA_US_EU575786_9014_01_TB1_4769,9014_01_TB1_4769 V_B_E_2_US_EU289189_62357_14_D3_4589,62357_14_D3_4589 V_B_E_2_US_EU289185_1054_07_TC4_1499,1054_07_TC4_1499 V_B_L_NA_CN_HM215428_CNE9,CNE9 V_C_E_NA_MW_FJ444600_Ce2060_G9,CE2060_G9 V_02_L_2_CM_EU513187_211_9,211-9 V_AD_E_NA_UG_HM215273_192018_B1_9,192018_B1_9 V_C_L_NA_BR_HIV1U15121_92BR025_9,92BR025.9 V_G_L_NA_GH_EU885764_X2088_c9,X2088_C9 V_C_E_NA_ZM_FJ496194_246F_C1G,246F C1G V_C_I_2_ZM_AY424079_ZM135M_PL10a,ZM135M.PL10A V_C_E_NA_MW_HM215360_BF1266_431a,BF1266.431A V_C_U_NA_MW_HM215361_BF1677F2_613a,BF1677F2.613A V_C_U_NA_MW_HM215362_BF942_218d,BF942.218D V_C_E_NA_MW_FJ444529_1394C9G1noRev,1394C9G1(REV-) V_C_E_NA_ZM_FJ496204_ZM247v1noRev,ZM247V1(REV-) V_C_E_NA_MW_FJ443999_7030102001E5noRev,7030102001E5(REV-) V_C_E_NA_ZA_FJ444059_7060101641A7noRev,7060101641A7(REV-) ############################################################################### Plasma names follow: P_AD_HQ615969_707010100,707010100 P_B_HQ595768_B200,B200 P_AD_HQ595773_C200,C200 P_B_HQ595769_B400,B400 P_B_JF680930_P400,P400 P_B_HQ595774_C500,C500 P_B_JF680909_C600,C600 P_ABCD_JF680912_G510,G510 P_C_HQ625593_SA-C10,SA-C10 P_A_HQ595767_A220,A220 P_B_HQ595770_B520,B520 P_C_JF680918_J520,J520 P_B_HQ595802_S520,S520 P_B_HQ595780_G230,G230 P_A_HQ595782_I230,I230 P_B_HQ595794_Q230,Q230 P_B_HQ595798_S230,S230 P_B_JF680931_P430,P430 P_A_HQ615971_707010240,707010240 P_B_JF680928_P150,P150 P_B_HQ595775_D650,D650 P_A_HQ595784_K160,K160 P_ABCD_JF680922_M260,M260 P_B_HQ595803_T460,T460 P_B_HQ595785_K560,K560 P_C_HQ615982_703010760,703010760 P_C_HQ615965_705010270,705010270 P_07_JF346914_CBJA570,CBJA570 P_C_HQ615988_703010180,703010180 P_C_HQ625565_SA-C80,SA-C80 P_C_HQ625579_SA-C90,SA-C90 P_C_HQ625580_SA-C101,SA-C101 P_07_JF346902_CBJA021,CBJA021 P_C_HQ615983_705010121,705010121 P_B_HQ595801_S321,S321 P_C_HQ625569_SA-C21,SA-C21 P_C_JF680927_N341,N341 P_07_JF346912_CBJA561,CBJA561 P_C_HQ625587_SA-C61,SA-C61 P_C_HQ615967_706010471,706010471 P_01_JF297227_T500204_502281,T500204 502281 P_C_HQ625581_SA-C91,SA-C91 P_C_HQ615987_703010102,703010102 P_01_JF297226_T500207_502102,T500207 502102 P_B_JF346917_CBJC502,CBJC502 P_01_JF297225_T500106_501602,T500106 501602 P_01_JF297232_T500107_535902,T500107 535902 P_C_HQ625568_SA-C12,SA-C12 P_07_JF346903_CBJA022,CBJA022 P_B_JF680907_C522,C522 P_B_HQ595795_R232,R232 P_C_HQ615964_703010632,703010632 P_C_HQ625590_SA-C32,SA-C32 P_B_JF680925_N242,N242 P_B_JF680937_W452,W452 P_07_JF346907_CBJA552,CBJA552 P_B_JF680913_G652,G652 P_B_HQ595792_P362,P362 P_C_HQ615976_707010562,707010562 P_C_HQ625574_SA-C62,SA-C62 P_C_HQ625585_SA-C72,SA-C72 P_C_HQ625583_SA-C82,SA-C82 P_C_HQ625595_SA-C2,SA-C2 P_B_JF346919_CBJC513,CBJC513 P_07_JF346904_CBJA023,CBJA023 P_B_HQ615980_700010333,700010333 P_B_HQ595772_B653,B653 P_02_HQ595796_S163,S163 P_B_JF680923_M263,M263 P_B_JF680934_S263,S263 P_07_JF346913_CBJA563,CBJA563 P_B_HQ595786_L563,L563 P_B_JF297229_T500108_503963,T500108 503963 P_C_HQ615985_703010073,703010073 P_C_HQ625566_SA-C3,SA-C3 P_B_HQ595776_E214,E214 P_AD_HQ595793_P534,P534 P_C_HQ625571_SA-C34,SA-C34 P_C_HQ625588_SA-C44,SA-C44 P_01_KC748972_T500104_256254,T500104 256254 P_B_HQ615981_700010464,700010464 P_C_HQ625576_SA-C74,SA-C74 P_C_HQ595800_S315,S315 P_B_JF680914_BWH_HIV-025,BWH HIV-025 P_07_JF346905_CBJA025,CBJA025 P_C_JF680935_T125,T125 P_B_HQ595797_S225,S225 P_B_HQ595788_M425,M425 P_B_HQ595783_J525,J525 P_B_JF680910_C625,C625 P_B_HQ595781_G435,G435 P_C_JF680908_C535,C535 P_B_HQ595790_M535,M535 P_D_HQ595791_N535,N535 P_01_JF297223_T500105_293735,T500105 293735 P_01_HQ690973_T500107_357545,T500107 357545 P_C_HQ625603_100255,100255 P_B_HQ595777_E355,E355 P_07_JF346908_CBJA555,CBJA555 P_C_HQ625584_SA-C75,SA-C75 P_C_HQ615986_703010085,703010085 P_B_JF346916_CBJC485,CBJC485 P_AC_HQ615977_707010585,707010585 P_A_HQ615968_707010095,707010095 P_01_JF297228_T500207_503006,T500207 503006 P_C_HQ625598_100206,100206 P_B_HQ595804_T516,T516 P_B_JF680915_BWH_HIV-026,BWH HIV-026 P_B_JF680906_A626,A626 P_C_HQ625570_SA-C26,SA-C26 P_C_HQ625589_SA-C36,SA-C36 P_C_HQ625604_100256,100256 P_07_JF346909_CBJA556,CBJA556 P_C_HQ625577_SA-C76,SA-C76 P_C_HQ625578_SA-C86,SA-C86 P_B_JF346918_CBJC507,CBJC507 P_07_JF346901_CBJA017,CBJA017 P_A_HQ615970_707010117,707010117 P_01_JF297224_T500105_500617,T500105 500617 P_A_HQ615979_707010627,707010627 P_C_HQ625572_SA-C37,SA-C37 P_07_JF346915_CBJB347,CBJB347 P_C_HQ625605_100257,100257 P_07_JF346910_CBJA557,CBJA557 P_C_HQ625575_SA-C67,SA-C67 P_C_KC833437_100177,100177 P_AC_HQ615973_707010277,707010277 P_C_HQ625582_SA-C87,SA-C87 P_C_HQ625597_100008,100008 P_07_JF346900_CBJ008,CBJ008 P_C_HQ615984_702010118,702010118 P_C_HQ625592_SA-C18,SA-C18 P_B_JF680916_BWH_HIV-028,BWH HIV-028 P_07_JF346906_CBJA028,CBJA028 P_C_HQ615966_705010528,705010528 P_C_HQ625602_100248,100248 P_01_JF297221_T500104_276248,T500104 276248 P_C_HQ625573_SA-C48,SA-C48 P_AC_HQ615972_707010258,707010258 P_01_JF297230_T500208_504258,T500208 504258 P_07_JF346911_CBJA558,CBJA558 P_C_HQ615963_703010588,703010588 P_B_JF297222_T500105_286588,T500105 286588 P_CD_HQ615978_707010598,707010598 P_C_HQ625594_SA-C8,SA-C8 P_01_JF297233_T500206_614109,T500206 614109 P_B_JF680917_BWH_HIV-029,BWH HIV-029 P_C_HQ625600_100239,100239 P_01_HQ615974_707010339,707010339 P_D_HQ615975_707010549,707010549 P_C_HQ615962_703010479,703010479 P_01_JF297231_T500207_509989,T500207 509989 P_C_HQ625567_SA-C9,SA-C9 P_B_JF680919_L000b,L000b P_B_JF680936_T300b,T300b P_D_JF680926_N320b,N320b P_B_HQ595805_T520b,T520b P_AC_HQ595799_S230b,S230b P_02_JF680905_A530b,A530b P_B_HQ595806_W450b,W450b P_A_JF680921_M160b,M160b P_B_JF680911_F432b,F432b P_B_JF680929_P362b,P362b P_01_JF680932_R163b,R163b P_B_HQ595779_G125b,G125b P_B_HQ595778_F455b,F455b P_B_JF680933_S200c,S200c P_B_JF680924_M600c,M600c P_C_HQ595789_M520c,M520c P_B_HQ595771_B650c,B650c P_C_HQ595787_M320d,M320d ############################################################################### END Created June 12, 2014 Last modified June 12, 2014
last modified: Mon Jul 11 09:14 2016
Questions or comments? Contact us at
seq-info@lanl.gov.
