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HIV sequence database

Special Interest Data:
Transmitted Virus Envelopes Prior to Seroconversion


Set of 567 subtype B env sequences from 37 subjects prior to seroconversion. MACS cohort.


Alignment: 567 env V1-V5 sequences from 37 patients (Fasta format)
Data: annotation data (comma-delimited text)

  • Alignment provided by authors.
  • Sequences correspond to accession numbers EU184091-EU184657.
  • Data file contains CD4 counts, viral loads and sampling dates.
Primary reference

Gottlieb GS, Heath L, Nickle DC, Wong KG, Leach SE, Jacobs B, Gezahegne S, van't Wout AB, Jacobson LP, Margolick JB, Mullins JI.
HIV-1 variation before seroconversion in men who have sex with men: analysis of acute/early HIV infection in the multicenter AIDS cohort study.
J Infect Dis. 2008 Apr 1;197(7):1011-5.
PMID 18419538

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last modified: Wed Dec 11 13:17 2013

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