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HIV Database Review Articles

This page lists reviews from both:
     HIV Sequence Compendium (in red)
     HIV Molecular Immunology Compendium (in green)

Link to: How to cite these review articles

   

-2013-

Best-Characterized HIV-1 CTL Epitopes: The 2013 Update
Anuska Llano, Ashley Williams, Alex Olvera, Sandra Silva-Arrieta, and Christian Brander
  PDF
   

-2010-

Identifying HLA-Associated Polymorphisms in HIV-1
Zabrina L. Brumme, Art F. Y. Poon, Jonathan M. Carlson, and Bruce D. Walker
  PDF
   

-2009-

How to Optimally Define Optimal Cytotoxic T-Lymphocyte Epitopes in HIV Infection?
Anuska Llano, Nicole Frahm, and Christian Brander
  PDF
   

-2008-

Identification and Optimal Definition of HIV-Derived Cytotoxic T-Lymphocyte (CTL) Epitopes for the Study of CTL Escape, Functional Avidity and Viral Evolution
Nicole Frahm, Brett Baker, and Christian Brander
  PDF
   

-2006/2007-

Sequence Alignment in HIV Computational Analysis
Ana Abecasis, Anne-Mieke Vandamme, Philippe Lemey
HTML PDF
The Epidemiology of Transmission of Drug Resistant HIV-1
David A.M.C. van de Vijver, Annemarie M.J. Wensing, Charles A.B. Boucher
HTML PDF
Search Tools in the HIV Databases
Jennifer Macke, Charles Calef, Karina Yusim, Robert Funkhouser, Thomas Leitner, James Szinger, Brian Gaschen, Werner Abfalterer, John Mokili, Brian Foley, Bette Korber, Carla Kuiken
HTML PDF
Mutations in Retroviral Genes Associated with Drug Resistance
Shauna A. Clark, Charles Calef, John W. Mellors
HTML PDF
Identification of HIV-Derived, HLA Class I Restricted CTL Epitopes: Insights into TCR Repertoire, CTL Escape and Viral Fitness
Nicole Frahm, Caitlyn Linde, and Christian Brander
PDF
Beyond Mamu-A*01+ Indian Rhesus Macaques: Continued Discovery of New MHC Class I Molecules that Bind Epitopes from the Simian AIDS Viruses
John T. Loffredo, Laura E. Valentine, and David I. Watkins
PDF
   

-2005-

The Call of the Wild: What Can Be Learned from Studies of SIV Infection of Natural Hosts?
Shari Gordon, Ivona Pandrea, Richard Dunham, Cristian Apetrei, Guido Silvestri
HTML PDF
Microbicides for the Prevention of HIV Infection
Salim S. Abdool Karim
HTML PDF
HIV-1 Subtype and Circulating Recombinant Form (CRF) Reference Sequences, 2005
Thomas Leitner, Bette Korber, Marcus Daniels, Charles Calef, Brian Foley
HTML PDF
Gateway to Tools of the HIV and HCV Database
Charles Calef, Carla Kuiken, James J. Szinger, Brian Gaschen, Werner Abfalterer, Ming Zhang, Ning Tao, Robert Funkhouser, Karina Yusim, Mark Flynn, Anita Dalwani, Brian Foley, William Bruno, Thomas Leitner and Bette Korber.
PDF
Mutations in Retroviral Genes Associated with Drug Resistance
Shauna A. Clark, Charles Calef, and John W. Mellors
HTML PDF
Optimal CTL Epitope Identification in HIV Clade B and Non-Clade B Infection
Nicole Frahm and Christian Brander
PDF
Acute HIV Infection: Implications for HIV Spread, Disease Progression, and Vaccine Development
Myron S. Cohen, Jeffrey A. Anderson and Ronald Swanstrom
PDF
Gateway to Tools of the HIV and HCV Database
Charles Calef, Carla Kuiken, James J. Szinger, Brian Gaschen, Werner Abfalterer, Ming Zhang, Ning Tao, Robert Funkhouser, Karina Yusim, Mark Flynn, Anita Dalwani, Brian Foley, William Bruno, Thomas Leitner and Bette Korber.
PDF
   

-2003-

Vif and the Role of Antiviral Cytidine Deaminases in HIV-1 Replication
Qin Yu, Nathaniel R. Landau and Renate König
PDF
Forms and Function of Intracellular HIV DNA
Andreas Meyerhans, Tanja Breinig, Jean-Pierre Vartanian, and Simon Wain-Hobson
PDF
The Microbial Forensic Use of HIV Sequences
Gerald H. Learn and James I. Mullins
PDF
Mutations in Retroviral Genes Associated with Drug Resistance
Urvi Parikh, Charles Calef, Shauna A. Clark, and John W. Mellors
PDF
Broad HIV-1 Specific CTL Responses Reveal Extensive HLA Class I Binding Promiscuity of HIV-Derived, Optimally Defined CTL Epitopes
Nicole Frahm, Philip J.R. Goulder and Christian Brander.
HTML PDF
Enhanced Motif Scan: A Tool to Scan for HLA Anchor Residues in Proteins
Karina Yusim, James J. Szinger, Isobella Honeyborne, Charles Calef, Philip J. R. Goulder, Bette T. M. Korber
- PDF
Human Monoclonal Antibodies that Neutralize HIV-1
Miroslaw K. Gorny and Susan Zolla-Pazner
HTML PDF
   

-2002-

Overview of Primate Lentiviruses and Their Evolution in Non-human Primates in Africa
Martine Peeters and Valerie Courgnaud
HTML PDF
Biological and Molecular Aspects of HIV-1 Coreceptor Usage
Fransje A. Koning, Ronald P. van Rij, and Hanneke Schuitemaker
HTML PDF
Mutational Analyses and Natural Variability of the gp41 Ectodomain
Rogier W. Sanders, Bette Korber, Min Lu, Ben Berkhout, and John P. Moore
HTML PDF
Nucleocapsid Protein Chaperoning of Nucleic Acids at the Heart of HIV Structure, Assembly and cDNA Synthesis
Jean-Luc Darlix, Marcelo Lopez Lastra, Yves Mely, and Bernard Roques
HTML PDF
Visualizing Lentiviral Protein 3D Structures
Brian Foley
HTML PDF
Mutations in Retroviral Genes Associated with Drug Resistance
Urvi Parikh, Charles Calef, Brendan Larder, Raymond Schinazi, and John W. Mellors
HTML PDF
Total Assessment of HIV-Specific CTL Responses: Epitope Clustering, Processing Preferences, and the Impact of HIV Sequence Heterogeneity
Nicole Frahm, Christian Brander, and Philip J. R. Goulder
HTML PDF
Web-based Tools for Vaccine Design
Ole Lund, Morten Nielsen, Can Kesmir, Jens K. Christensen, Claus Lundegaard, Peder Worning,and Soren Brunak
HTML PDF
Mutational Analyses and Natural Variability of the gp41 Ectodomain
Rogier W. Sanders, Bette Korber, Min Lu, Ben Berkhout, and John P. Moore
HTML PDF
   

-2001-

HIV-1 Gag: a Molecular Machine Driving Viral Particle Assembly and Release
Heinrich G. Göttlinger
HTML PDF
Lentiviral LTR-directed Expression, Sequence Variation, and Disease Pathogenesis
Fred C. Krebs, Tricia H. Hogan, Shane Quiterio, Suzanne Gartner, and Brian Wigdahl
HTML PDF
Species and Tissue Tropisms of HIV-1: Molecular Basis and Phenotypic Consequences
Bryan R. Cullen
HTML PDF
A Guide to HIV-1 Reverse Transcriptase and Protease Sequencing for Drug Resistance Studies
Robert W. Shafer, Kathryn Dupnik, Mark A. Winters, Susan H. Eshleman
- PDF
HIV-1 Fitness: Implications for Drug Resistance, Disease Progression, and Global Epidemic Evolution
Miguel E. Quiñones-Mateu and Eric J. Arts
HTML PDF
Numbering Positions in SIV Relative to SIVMM239
Charles Calef, John Mokili, David H. O'Connor, David I. Watkins, and Bette Korber
HTML PDF
Reagents for HIV/SIV Vaccine Studies
Carla Kuiken
HTML PDF
Mutations in Retroviral Genes Associated with Drug Resistance
Urvi Parikh, Charles Calef, Brendan Larder, Raymond Schinazi, and John W. Mellors
- PDF
The Identification of Optimal HIV-Derived CTL Epitopes in Diverse Populations Using HIV Clade-Specific Consensus
Christian Brander and Philip J. R. Goulder
HTML PDF
ELF: An Analysis Tool for HIV-1 Peptides and HLA Types
Charles Calef, Rama Thakallapally, Richard Kaslow, Mark Mulligan, Bette Korber
HTML PDF
Where Have All The Monkeys Gone?: Evaluating SIV-Specific CTL in the Post-Mamu-A*01 Era
David H. O'Connor, Todd M. Allen, and David I. Watkins
HTML PDF
A Review of the Role of the Human Leukocyte Antigen (HLA) System as a Host Immunogenetic Factor Influencing HIV Transmission and Progression to AIDS
Elizabeth A. Trachtenberg and Henry A. Erlich
HTML PDF
   

-2000-

An overview of HIV-1 coreceptor function and its inhibitors
Emmanuel G. Cormier and Tatjana Dragic
HTML PDF
An overview of the molecular phylogeny of lentiviruses
Brian T. Foley
HTML PDF
Sequence homology search tools on the World Wide Web
Ian Holmes
HTML PDF
Tat, a novel regulator of HIV transcription and latency
Jonathan Karn
HTML PDF
Reagents for HIV/SIV Vaccine Studies
Rama Thakallapally, Carla Kuiken
HTML PDF
Mutations in retroviral genes associated with drug resistance
Urvi Parikh, Jennifer Hammond, Charles Calef, Brendan Larder, Raymond Schinazi, and John W. Mellors
- PDF
Recombinant HIV sequences: Their role in the global epidemic
Martine Peeters
HTML PDF
Clinical trials of HIV vaccines
Barney S. Graham
HTML PDF
The Evolving Field of HIV CTL Epitope Mapping: New Approaches to the Identification of Novel Epitopes
Christian Brander and Philip J. R. Goulder
HTML PDF
The Characterization of HIV-1 Specific CD4+ T Helper Epitopes
Lisa A. Cosimi and Eric S. Rosenberg
HTML PDF
PeptGen: Designing Peptides for Immunological Studies and Application to HIV Consensus Sequences
Charles Calef, Rama Thakallapally, Dorothy Lang, Christian Brander, Philip Goulder, Otto Yang, Bette Korber
HTML PDF
Motif Scan: A Web-based Tool to Find HLA Anchor Residues in Proteins or Peptides
Rama Thakallapally, Warren Kibbe, Dorothy Lang, Bette Korber
HTML PDF
   

-1999-

A Structure-function analysis of the Nef Protein of Primate Lentiviruses
Vincent Piguet and Didier Trono
HTML PDF
Diversity and Evolution of Primate Lentiviruses
Brigitte E. Beer, Elizabeth Bailes, Paul M. Sharp, and Vanessa M. Hirsch
HTML PDF
Kaposi's Sarcoma and Kaposi's Sarcoma-associated Herpesvirus/Human Herpesvirus 8: An Overview
Neil Renwick, Thomas Schulz and Jaap Goudsmit
HTML PDF
HIV-1 Nomenclature Proposal
D. L. Robertson, J. P. Anderson, J. A. Bradac, J. K. Carr, B. Foley, R. K. Funkhouser, F. Gao, B. H. Hahn, C. Kuiken, G. H. Learn, T. Leitner, F. McCutchan, S. Osmanov, M. Peeters, D. Pieniazek, M. L. Kalish, M. Salminen, P. M. Sharp, S. Wolinsky, and B. Korber
HTML PDF
Reagents for HIV/SIV Vaccine Studies
Rama Thakallapally, Patrick Rose, Sonia Vasil, Satish Pillai, and Carla Kuiken
HTML PDF
Coreceptor Use by Primate Lentiviruses
Christopher C. Broder and Agnes Jones-Trower
HTML PDF
Mutations in Retroviral Genes Associated with Drug Resistance
Jennifer Hammond, Charles Calef, Brendan Larder, Raymond Schinazi,and John W. Mellors
HTML PDF
Recent Advances in HIV-1 CTL Epitope Characterization
Christian Brander and Philip J. R. Goulder
HTML -
Neutralizing Epitopes of HIV-1
Aran F. Labrjin and Paul W. H. I. Parren
HTML PDF
Methods of Detection of HIV-specific CTL and Their Role in Protection Against HIV Infection
Rupert Kaul and Sarah L. Rowland-Jones
HTML -
SIV and SHIV CTL Epitopes Identified in Macaques
Todd M. Allen and David I. Watkins
HTML -
   

-1998-

Structure of the core of the HIV-1 gp120 Exterior Envelope Glycoprotein
Richard Wyatt, Peter D. Kwong, Wayne A. Hendrickson, Joseph G. Sodroski
HTML PDF
Reference Sequences Representing the Principal Genetic Diversity of HIV-1 in the Pandemic
Jean K. Carr, Brian T. Foley, Thomas Leitner, Mika Salminen, Bette Korber, Francine McCutchan
HTML PDF
Coreceptor Use by Primate Lentiviruses
Robert W. Doms, Aimee L. Edinger, John P. Moore
HTML PDF
Sequence Quality Control
Carla Kuiken and Bette Korber
HTML PDF
Numbering Positions in HIV Relative to HXB2CG
Bette Korber, Brian T. Foley, Carla Kuiken, Satish K. Pillai, Joseph G. Sodroski
HTML PDF
Phylogenetic Analysis of gp41 Envelope of HIV-1 Groups M, N, and O
Danuta Pieniazek, Chunfu Yang, Renu B. Lal
HTML PDF
Reagents for HIV/SIV Vaccine Studies
Sonia Vasil, Rama Thakallapally, Satish Pillai, Carla Kuiken
HTML PDF
SIV and SHIV CTL Epitopes Identified in Macaques
Todd M. Allen and David I. Watkins
HTML PDF
Systematic Identification of Optimal HIV-1 CTL Epitopes
Christian Brander and Bruce D. Walker
HTML -
MHC Tetramer Analyses of CD8+ T Cell Responses to HIV and SIV
John D. Altman and Jeffrey T. Safrit
HTML -
   

-1997-

Updated Proposal of Reference Sequences of HIV-1 Genetic Subtypes
Thomas Leitner, Bette Korber, David Robertson, Feng Gao, Beatrice Hahn
HTML PDF
HIV-1 Coreceptor Use: A Molecular Window into Viral Tropism
Robert W. Doms and John P. Moore
HTML PDF
The History of HIV-1 Biological Phenotypes Past, Present, and Future
Eva Maria Fenyo, Hanneke Schuitemaker, Birgitta Asjo, Jane McKeating
HTML PDF
Fine Structure of HIV and SIV
Hans R. Gelderblom
HTML PDF
Reagents for HIV/SIV Vaccine Studies
Sonia Vasil, Rama Thakallapally, Satish Pillai, Carla Kuiken
HTML PDF
gp41, A Multifunctional Protein Involved in HIV Entry and Pathogenesis
Eric Hunter
HTML PDF
Intersubtype Recombinant HIV-1 Sequences
David L. Robertson, Feng Gao, Beatrice H. Hahn
HTML PDF
Drug Resistance Mutations Superimposed on the Structures of HIV-1 Protease and Reverse Transcriptase
Holly Tao
HTML PDF
Mutations in Retroviral Genes Associated with Drug Resistance
Jennifer Hammond, Brendan A. Larder, Raymond F. Schinazi and John W. Mellors
HTML -
Systematic Identification of Optimal HIV-1 CTL Epitopes
Christian Brander and Bruce D. Walker
HTML -
HIV-1 Specific Cytotoxic T-Lymphocyte(CTL) responses in Pediatric Infection
Katherine Luzuriaga and John L. Sullivan
HTML -
CTL responses of Rhesus Monkeys to AIDS viruses: Epitopes and their restricting MHC Class-I Alleles
William A. Charini and Norman L. Letvin
HTML -
   

-1996-

Antibody Cross-Competition Analysis of the HIV-1 gp120 Envelope Glycoprotein and a summary of Selected Competition groups
John P. Moore and Joseph Sodroski
HTML
B-cell Epitopes on the Envelope Glycoproteins of SIV and HIV-2
Karen A. Kent and Ewa Bjorling
HTML -
Physicochemical Analyses of the Humoral Immune Response to HIV-1: Quantification of Antibodies, Their Binding to Viral Antigens and Neutralization of Viral Infectivity
P. J. Klasse
HTML -
A Comparison of HIV-1 Group M and Group O Functional and Immunogenic Domains in the Gag P24 Protein and the C2V3 Region of the Envelope Protein
Bette Korber, Ibtissam Loussert-Ajakai, John Blouin and Sentob Saragosti
HTML -
HIV and Molecular Mimicry
Gerald Myers and Hong Lu
HTML -
The HLA-class I Restricted CTL Response in HIV-1 Infection: Systematic Identification of Optimal Epitopes
Christian Brander and Bruce D.Walker
HTML -
   

-1995-

   
The HLA-class I Restricted CTL Response in HIV-1 Infection: Identification of Optimal Epitopes
Christian Brander and Bruce D. Walker
HTML -
Analysis of HLA Frequencies in Population Cohorts for Design of HLA-Based HIV Vaccines
Frances E Ward, Shiangtai Tuan, and Barton F. Haynes
HTML -
Prediction of T-Cell Epitopes for HIV Vaccine Development by Computer-Driven Algorithm
Anne S. DeGroot, Bill M. Jesdale, Gabriel E. Meister, Neal I. Muni, and Caroline G. P. Roberts
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last modified: Thu Oct 24 11:44 2013


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