HIV-1 Coreceptor Use Data from the NIH AIDS Research and Reference Reagent Program
The following table is a compilation of HIV-1 isolates from the AIDS Reagent Program. They are ordered by clade (based on env) with their phenotype, coreceptor classification, and main receptor characteristics shown, as in the previous table. These data were derived from the laboratories of Drs. David Ho and Jack Nunberg.
|
Strain |
Accessiona |
Clade |
Tropismb |
Designationc |
Receptord |
|
92RW008 |
U08762 U08630 |
A |
NSI |
R5 |
CCR5 |
|
92RW016 |
U08633 |
A |
R5 |
CCR5 |
|
|
92RW021 |
U08641 |
A |
R5 |
CCR5 |
|
|
92RW023 |
U13455 |
A |
NSI |
R5 |
CCR5 |
|
92RW024 |
U08648 |
A |
R5 |
CCR5 |
|
|
92RW025 |
U08657 |
A |
R5 |
CCR5 |
|
|
93RW002 |
NA |
A |
R5 |
CCR5 |
|
|
93RW004 |
NA |
A |
R5 |
CCR5 |
|
|
93RW005 |
NA |
A |
R5 |
CCR5 |
|
|
93RW018 |
NA |
A |
R5 |
CCR5 |
|
|
93RW020 |
NA |
A |
R5X4 |
CXCR4, CCR5 |
|
|
93RW021 |
NA |
A |
R5 |
CCR5 |
|
|
93RW022 |
NA |
A |
R5 |
CCR5 |
|
|
93RW024 |
NA |
A |
R5X4 |
CXCR4, CCR5 |
|
|
93RW028 |
NA |
A |
R5 |
CCR5 |
|
|
93RW029 |
NA |
A |
NSI |
R5 |
CCR5 |
|
93RW031 |
NA |
A |
R5 |
CCR5 |
|
|
93RW034 |
NA |
A |
R5 |
CCR5 |
|
|
93RW035 |
NA |
A |
R5 |
CCR5 |
|
|
93RW037 |
NA |
A |
R5 |
CCR5 |
|
|
93UG077 |
NA |
A |
R5 |
CCR5 |
|
|
93UG079 |
NA |
A |
R5 |
CCR5 |
|
|
93UG089 |
NA |
A |
R5 |
CCR5 |
|
|
94UG103 |
NA |
A |
R5X4 |
CXCR4, CCR5 |
|
|
97USSN54 |
AF096347 |
A |
R5 |
CCR5 |
|
|
92USSN20 |
AF096341 |
A |
R5X4 |
CXCR4, CCR5 |
|
|
96USNG17 |
NA |
A |
X4 |
CXCR4 |
|
|
91US006 |
U27443 |
B |
R5 |
CCR5 |
|
|
91US056 |
U79719 |
B |
NSI |
R5 |
CCR5 |
|
91US715 |
NA |
B |
R5 |
CCR5 |
|
|
92BR003 |
U08771 |
B |
NSI |
R5 |
CCR5 |
|
92BR004 |
U0867 |
B |
NSI |
R5 |
CCR5 |
|
92BR014 |
U08796 |
B |
SI |
R5X4 |
CXCR4, CCR5 |
|
92BR017 |
U08774 |
B |
NSI |
R5 |
CCR5 |
|
92BR018 |
NA |
B |
NSI |
R5 |
CCR5 |
|
92BR019 |
NA |
B |
R5 |
CCR5 |
|
|
92BR021 |
NA |
B |
NSI |
R5 |
CCR5 |
|
92BR023 |
U08779 |
BC |
NSI |
R5 |
CCR5 |
|
92BR024 |
NA |
B |
R5 |
CCR5 |
|
|
92BR026 |
NA |
B |
R5 |
CCR5 |
|
|
92BR028 |
U16217 |
B |
NSI |
R5 |
CCR5 |
|
92BR030 |
NA |
B |
NSI |
R5 |
CCR5 |
|
92HT594 |
U08445 |
B |
SI |
R5X4 |
CXCR4, CCR5 |
|
92HT596 |
U08446 |
B |
SI |
R5X4 |
CXCR4, CCR5 |
|
92PR729 |
U04927 |
B |
R5 |
CCR5 |
|
|
92TH026 |
U08802 |
B |
NSI |
R5 |
CCR5 |
|
92US076 |
NA |
B |
SI |
R5X4 |
CXCR4, CCR5 |
|
92US660 |
U04909 |
B |
NSI |
R5 |
CCR5 |
|
92US714 |
U08450 |
B |
NSI |
R5 |
CCR5 |
|
92US723 |
NA |
B |
R5X4 |
CXCR4, CCR5 |
|
|
92US727 |
U79720 |
B |
NSI |
R5 |
CCR5 |
|
93BR008 |
NA |
B |
R5 |
CCR5 |
|
|
93BR009 |
NA |
B |
R5 |
CCR5 |
|
|
93BR011 |
NA |
B |
R5 |
CCR5 |
|
|
93BR012 |
NA |
B |
R5 |
CCR5 |
|
|
93BR013 |
NA |
B |
R5 |
CCR5 |
|
|
93BR015 |
NA |
B |
R5 |
CCR5 |
|
|
93BR017 |
NA |
B |
R5 |
CCR5 |
|
|
93BR021 |
NA |
B |
R5 |
CCR5 |
|
|
93BR022 |
NA |
B |
R5 |
CCR5 |
|
|
93BR023 |
NA |
B |
R5 |
CCR5 |
|
|
93BR024 |
NA |
B |
R5 |
CCR5 |
|
|
93BR025 |
NA |
B |
R5 |
CCR5 |
|
|
93BR026 |
NA |
B |
R5 |
CCR5 |
|
|
93BR027 |
NA |
B |
R5 |
CCR5 |
|
|
93BR028 |
NA |
B |
R5 |
CCR5 |
|
|
93US073 |
U79721 |
B |
NSI |
R5 |
CCR5 |
|
A17 |
NA |
B |
R5X4 |
CXCR4, CCR5 |
|
|
BZ167 |
L22087 L11752 |
B |
R5X4 |
CXCR4, CCR5 |
|
|
ME1 |
U66221 |
B |
R5 |
CCR5 |
|
|
ME46 |
U66222 |
B |
R5X4 |
CXCR4, CCR5 |
|
|
MN |
M17449 |
B |
X4 |
CXCR4 |
|
|
QZ4589 |
U32396 |
B |
R5 |
CCR5 |
|
|
93TH067 |
U39258 U39259 |
B |
R5 |
CCR5 |
|
|
93TH074 |
NA |
B |
R5 |
CCR5 |
|
|
93TH080 |
NA |
B |
R5 |
CCR5 |
|
|
96USHIPS4 |
NA |
B |
R5X4 |
CXCR4, CCR5 |
|
|
96USHIPS9 |
NA |
B |
R5X4 |
CXCR4, CCR5 |
|
|
96USHIPS7 |
NA |
B |
R5 |
CCR5 |
|
|
93BR019 |
U27444 U51289 U27404 |
BF |
X4 |
CXCR4 |
|
|
93IN101 |
NA |
C |
NSI |
R5 |
CCR5 |
|
93IN904 |
AF067157 |
C |
R5 |
CCR5 |
|
|
93IN905 |
AF067158 |
C |
R5 |
CCR5 |
|
|
93IN999 |
AF067154 |
C |
R5 |
CCR5 |
|
|
93MW959 |
U08453 U51292 |
C |
NSI |
R5 |
CCR5 |
|
93MW960 |
U08454 U51293 |
C |
NSI |
R5 |
CCR5 |
|
94KE105 |
NA |
C |
R5 |
CCR5 |
|
|
96USNG31 |
AF096327 |
C |
R5X4 |
CXCR4, CCR5 |
|
|
96USNG58 |
AF096329 |
C |
R5 |
CCR5 |
|
|
97USNG30 |
AF096349 |
C |
R5 |
CCR5 |
|
|
98BR004 |
NA |
C |
R5 |
CCR5 |
|
|
98CN006 |
NA |
C |
R5 |
CCR5 |
|
|
98IN022 |
NA |
C |
R5 |
CCR5 |
|
|
98IN026 |
NA |
C |
R5 |
CCR5 |
|
|
98TZ013 |
NA |
C |
R5 |
CCR5 |
|
|
98TZ017 |
NA |
C |
R5 |
CCR5 |
|
|
97ZA003 |
NA |
C |
R5 |
CCR5 |
|
|
97ZA009 |
NA |
C |
R5 |
CCR5 |
|
|
97ZA012 |
NA |
C |
R5 |
CCR5 |
|
|
92UG001 |
U08721 |
D |
SI |
R5X4 |
CXCR4, CCR5 |
|
92UG005 |
U08803 |
D |
R5 |
CCR5 |
|
|
92UG035 |
U36881 |
AD |
NSI |
R5 |
CCR5 |
|
92UG038 |
U08806 |
D |
SI |
X4 |
CXCR4 |
|
93UG053 |
U08738 |
D |
SI |
X4 |
CXCR4 |
|
93UG059 |
U08739 |
D |
SI |
X4 |
CXCR4 |
|
93UG065 |
U08740 |
D |
SI |
X4 |
CXCR4 |
|
93UG067 |
U13545 |
D |
SI |
R5X4 |
CXCR4, CCR5 |
|
93UG070 |
U08741 |
D |
SI |
X4 |
CXCR4 |
|
93UG082 |
NA |
D |
NSI |
R5 |
CCR5 |
|
93UG086 |
NA |
D |
SI |
R5X4 |
CXCR4, CCR5 |
|
94UG105 |
NA |
D |
SI |
X4 |
CXCR4 |
|
94UG108 |
NA |
D |
NSI |
R5 |
CCR5 |
|
94UG114 |
U88824 |
D |
NSI |
R5 |
CCR5 |
|
94UG117 |
AF096328 |
D |
SI |
X4 |
CXCR4 |
|
94UG118 |
NA |
D |
NSI |
R5 |
CCR5 |
|
92TH003 |
U08743 |
E\sup{i} |
NSI |
R5 |
CCR5 |
|
92TH005 |
U08744 |
E |
NSI |
R5 |
CCR5 |
|
92TH006 |
U08810 |
EA |
NSI |
R5 |
CCR5 |
|
92TH007 |
U08747 |
E |
NSI |
R5 |
CCR5 |
|
92TH009 |
U08748 |
E |
NSI |
R5 |
CCR5 |
|
92TH019 |
U08753 |
E |
NSI |
R5 |
CCR5 |
|
92TH020 |
U08754 |
E |
NSI |
R5 |
CCR5 |
|
92TH021 |
U08724 |
E |
NSI |
R5 |
CCR5 |
|
92TH024 |
U08761 |
E |
R5 |
CCR5 |
|
|
93TH051 |
NA |
E |
R5X4 |
CXCR4, CCR5 |
|
|
93TH053 |
NA |
E |
X4 |
CXCR4 |
|
|
93TH054 |
NA |
E |
R5 |
CCR5 |
|
|
93TH057 |
NA |
E |
R5 |
CCR5 |
|
|
93TH060 |
NA |
E |
R5 |
CCR5 |
|
|
93TH062 |
NA |
E |
R5 |
CCR5 |
|
|
93TH064 |
NA |
E |
R5 |
CCR5 |
|
|
93TH065 |
NA |
E |
R5 |
CCR5 |
|
|
93TH069A |
NA |
E |
R5 |
CCR5 |
|
|
93TH072 |
NA |
E |
R5 |
CCR5 |
|
|
93TH073 |
NA |
E |
R5 |
CCR5 |
|
|
93TH078 |
NA |
E |
R5 |
CCR5 |
|
|
CMU02 |
U48267 |
E |
SI |
X4 |
CXCR4 |
|
CMU08 |
U48268 |
E |
SI |
X4 |
CXCR4 |
|
CMU10 |
E |
NSI |
X4 |
CXCR4 |
|
|
93BR020 |
AF005494 |
F |
SI |
R5X4 |
CXCR4, CCR5 |
|
G3 |
U88825 |
AG |
NSI |
R5 |
CCR5 |
|
Jv1083 |
U88826 |
G |
NSI |
R5 |
CCR5 |
|
RU132 |
NA |
G |
NA |
R5 |
CCR5 |
|
RU570 |
U08368 |
G |
NSI |
R5 |
CCR5 |
|
YBF30 |
AJ006022 |
N |
NSI |
R5 |
CCR5 |
|
BCF01 |
Y14496 |
O |
NSI |
R5 |
CCR5 |
|
BCF02 |
Y14497 |
O |
NSI |
R5 |
CCR5 |
|
BCF03 |
Y14498 |
O |
NSI |
R5 |
CCR5 |
|
MVP5180 |
L20571 |
O |
SI |
R5X4 |
CXCR4, CCR5 |
|
74V |
X4 |
CXCR4 |
|||
|
90US144 |
NA |
NSI |
R5 |
CCR5 |
|
|
92US072 |
NA |
NSI |
R5 |
CCR5 |
|
|
92US077 |
NA |
SI |
R5X4 |
CXCR4, CCR5 |
|
|
93US074 |
NA |
NSI |
R5 |
CCR5 |
|
|
93US075 |
NA |
NSI |
R5 |
CCR5 |
|
|
93US140 |
NA |
NSI |
R5 |
CCR5 |
|
|
93US141 |
NA |
NSI |
R5 |
CCR5 |
|
|
93US142 |
NA |
NSI |
R5 |
CCR5 |
|
|
93US143 |
NA |
SI |
R5X4 |
CXCR4, CCR5 |
|
|
93US149 |
NA |
NSI |
R5 |
CCR5 |
|
|
93US151 |
NA |
SI |
R5X4 |
CXCR4, CCR5 |
|
|
93US155 |
NA |
NSI |
R5 |
CCR5 |
|
|
93US157 |
NA |
NSI |
R5 |
CCR5 |
|
|
93US159 |
NA |
NSI |
R5 |
CCR5 |
|
|
A012 |
M91819 |
B |
NA |
R5X4 |
CXCR4, CCR5 |
|
A018 |
NA |
NA |
NA |
R5X4 |
CXCR4, CCR5 |
|
ASJM 108 |
NA |
R5 |
CCR5 |
||
|
ASM 121 |
NA |
R5 |
CCR5 |
||
|
ASM 3 |
NA |
R5 |
CCR5 |
||
|
ASM 34 |
NA |
R5 |
CCR5 |
||
|
ASM 42 |
NA |
R5 |
CCR5 |
||
|
ASM 44 |
NA |
R5X4 |
CXCR4, CCR5 |
||
|
ASM 54 |
NA |
R5X4 |
CXCR4, CCR5 |
||
|
ASM 57 |
NA |
R5 |
CCR5 |
||
|
ASM 61 |
NA |
R5 |
CCR5 |
||
|
ASM 71 |
NA |
R5 |
CCR5 |
||
|
ASM 79 |
NA |
R5 |
CCR5 |
||
|
ASM 80 |
NA |
R5 |
CCR5 |
||
|
ASM 93534 |
NA |
R5 |
CCR5 |
||
|
ASM 93765 |
NA |
R5 |
CCR5 |
||
|
ASM 94122 |
NA |
R5 |
CCR5 |
||
|
CC |
X4 |
CXCR4 |
|||
|
G910-11 |
NA |
R5X4 |
CXCR4, CCR5 |
||
|
I391-1 |
NA |
R5X4 |
CXCR4, CCR5 |
||
|
I391-4 |
NA |
R5X4 |
CXCR4, CCR5 |
||
|
I495-2 |
NA |
R5X4 |
CXCR4, CCR5 |
||
|
JC |
NA |
X4 |
CXCR4 |
||
|
L10R/M46I/L63P/I84V |
NA |
X4 |
CXCR4 |
||
|
LAI-M184V |
X4 |
CXCR4 |
|||
|
M46L/L63P/V82T/I84V |
NA |
R5X4 |
CXCR4, CCR5 |
||
|
N119 |
X4 |
CXCR4 |
|||
|
RTMC |
NA |
R5X4 |
CXCR4, CCR5 |
||
|
RTMDR1 |
NA |
X4 |
CXCR4 |
||
|
RTMF |
NA |
R5X4 |
CXCR4, CCR5 |
