The Human Retroviruses and AIDS 1999 Compendium

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Introduction, Glossary, and Landmarks of the Genome

• Table of Contents
• Introduction
• Acknowledgements
• Landmarks and glossary

PART I. Nucleotide Alignments of HIV-1/SIVcpz Complete Genomes

• Table of Contents
• Introduction
• Table of HIV-1/SIVcpz Sequences in the Nucleotide Alignment
• Notes on full length HIV-1/SIVcpz Sequences in the Nucleotide Alignment
• Nucleotide Alignment of HIV-1/SIVcpz Complete Genomes

PART II. Nucleotide Alignments of HIV-1/HIV-2/SIV Complete Genomes

• Table of Contents
• Introduction
• Table of Primate Lentiviruses Sequences in the Nucleotide Alignment
• Nucleotide Alignment of Primate Lentiviral Complete Genomes

PART III. HIV-1/SIVcpz Amino Acid Alignments

• Table of Contents
• Introduction
• Table of HIV-1/SIVcpz Sequences in the Amino Acid Alignments
• Gag
• Pol
• Vif
• Vpr
• Tat
• Rev
• Vpu
• Env
• Nef

PART IV. HIV-2/SIV Amino Acid Alignments

• Table of Contents
• Introduction
• Table of HIV-2/SIV Sequences in the Amino Acid Alignments
• Gag
• Pol
• Vif
• Vpr
• Tat
• Rev
• Vpx
• Env
• Nef

PART V. Other SIV Amino Acid Alignments

• Table of Contents
• Table of Other SIV Sequences in the Amino Acid Alignments
• Gag
• Pol
• Vif
• Vpr
• Tat
• Rev
• Env
• Nef

PART VI. Reviews

• A Structure-function Analyses of the Nef Protein of Primate Lentiviruses
  Vincent Piguet and Didier Trono
• Diversity and Evolution of Primate Lentiviruses
  Brigitte E. Beer, Elizabeth Bailes, Paul M. Sharp, and Vanessa M. Hirsch
• Kaposi's Sarcoma and Kaposi's Sarcoma-associated Herpesvirus/Human Herpesvirus 8: An Overview
  Neil Renwick, Thomas Schulz, and Jaap Goudsmit
• HIV-1 Nomenclature Proposal: A Reference Guide to HIV-1 Classification
  D. L. Robertson, J. P. Anderson, J. A. Bradac, J. K. Carr, B. Foley, R. K. Funkhouser, F. Gao, B. H. Hahn, C. Kuiken, G. H. Learn, T. Leitner, F. McCutchan, S. Osmanov, M. Peeters, D. Pieniazek, M. L. Kalish, M. Salminen, P. M. Sharp, S. Wolinsky, and B. Korber
• Reagents for HIV/SIV Vaccine Studies
  Rama Thakallapally, Patrick Rose, Sonia Vasil, Satish Pillai, and Carla Kuiken
• Coreceptor Use by Primate Lentiviruses
  Christopher C. Broder and Agnes Jones-Trower
• Mutations in Retroviral Genes Associated with Drug Resistance
  Jennifer Hammond, Charles Calef, Brendan Larder, Raymond Schinazi, and John W. Mellors

PART VII. Global Variation in the HIV-1 V3 Region

• Table of Contents
• Introduction
• V3 Loop Evolution
• Subtype Consensus Sequences
• V3 Loop Amino Acids
• Tetrameric Tip Variation
• Country Codes
• V3 Region Alignments
• Sequence Description
• References