HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Gap Strip/Squeeze v2.1.0

Purpose: To delete aligned columns that contain a chosen percentage of gaps or other characters.

Details: Set the gap tolerance to any value between 0% and 100%. A value of 0% will cause columns to be deleted if they contain only a single gap ("gap stripping"), while a value of 100% will delete only columns that are entirely gaps ("gap squeezing"). See Explanation file for additional details.

Input
Paste your alignment

[Sample Input]
Or upload your alignment

Options

Gap character(s) icon
Gap tolerance icon %
Show deleted gaps icon
Preserve codons icon
(delete gaps in triplets)
Use tolerance for [1,2,3] positions in the codon icon
Reading frame of the alignment icon


Release Notes: For details on releases click here.

Known Bugs: For known bugs click here.

Wish List: For desired new features click here here.

last modified: Thu Mar 23 12:29 2023


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health