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HIV sequence database


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Purpose: Epilign generates an alignment of your amino acid sequence against our ready-made alignments.

Details: This tool can be used to align epitopes, functional domains, or any protein region of interest. An analogous tool, PrimAlign, performs the same function for nucleotide sequences.

Input should consist of a single amino acid sequence. For cases where alignment of C-terminal residues is critical, Epilign offers an option to delete gaps from the alignment; see Epilign Explanation.

Paste your input here
or upload your file

Squeeze gaps (this will shift your sequence toward the C terminus)
last modified: Mon Jan 4 14:28 2016

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