Ambiguity Consensus Maker

Purpose: Make a consensus for a nucleotide alignment, with the output containing IUPAC ambiguity codes rather than majority characters. Can be used to make consensuses for blocks of sequences within the alignment. For details, see Ambiguity Consensus Maker Explanation.

Paste your alignment [Sample Input]
Or browse for your file
Squeeze gaps in input	Yes     No

Make consensus for each block	Yes     No
Show number of sequences in consensus	Yes     No
Minimum number of sequences per block for consensus

Character presence percentage

Show both consensus + alignment	Yes     No
Output format	Pretty    Output aligned    Like input