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HIV sequence database

Ambiguity Consensus Maker

Purpose: Make a consensus for a nucleotide alignment, with the output containing IUPAC ambiguity codes rather than majority characters. Can be used to make consensuses for blocks of sequences within the alignment. For details, see Ambiguity Consensus Maker Explanation.

Paste your alignment
[Sample Input]
Or browse for your file
icon Squeeze gaps in input Yes     No
Consensus-by-Block Options
icon Make consensus for each block Yes     No
iconShow number of sequences in consensus Yes     No
iconMinimum number of sequences per block for consensus
Consensus Calculation Option
icon Character presence percentage
Output Options
icon Show both consensus + alignment Yes     No
icon Output format Pretty    Output aligned    Like input
last modified: Mon Apr 2 08:49 2018

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