HIV Databases HIV Databases home HIV Databases home
HIV sequence database



Ambiguity Consensus Maker

Purpose: Make a consensus for a nucleotide alignment, with the output containing IUPAC ambiguity codes rather than majority characters. Can be used to make consensuses for blocks of sequences within the alignment. For details, see Ambiguity Consensus Maker Explanation.

Input
Paste your alignment
[Sample Input]
Or browse for your file
icon Squeeze gaps in input Yes     No
Consensus-by-Block Options
icon Make consensus for each block Yes     No
iconShow number of sequences in consensus Yes     No
iconMinimum number of sequences per block for consensus
Consensus Calculation Option
icon Character presence percentage
Output Options
icon Show both consensus + alignment Yes     No
icon Output format Pretty    Output aligned    Like input
last modified: Mon Apr 2 08:49 2018


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health