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HIV sequence database



AnalyzeAlign

Purpose: Show weblogos, calculate frequency by position, and find variants in an alignment. Explanation.

Input
Alignment
[Sample Input]
icon
  
  
icon
    Alignment
type
    Organism
    Region
    Subtypes  
Sequence type
Positions/range to analyze icon
Total positions ≤ 200!
Range numbers refer to icon
Group the sequences icon
      Group sequences by:
   of names delimited by
character(s) in names
(example)
    
    
subtypes (the first field)
plus Logo options
minus Other options
Output
Email results
Downloadable logo files PDF  EPS  SVG 
Combine logos for subsets into a page
Concatenate PDF or EPS logos as a x matrix   (row x column)
      Orientation:
     


Related links:

last modified: Sat May 30 20:19 2020


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