HIV molecular immunology database


Search the Epitope Variant and Escape Mutation Database


Found 1 matching record:

Displaying record number 62099

HXB2 Location  Gag(28-36)   Gag Epitope Map
View variants at this location
Epitope KYRLKHIVW   Epitope Alignment
qYRLKHvVW   observed variant
Epitope Name KW9
Species (MHC/HLA human(A*24)

Variant Details

Showing 1 of 3 variants.

Variant ID.  4192
Epitope Seq.  KYRLKHIVW
Variant Seq.  qYRLKHvVW
Mutations K/Q I/V
Epitope Location K1Q I7V
HXB2 Location K28Q I34V
Mutation Type OV: observed variant
Method Sequence
Note Longitudinal deep sequencing in Subject 9213 showed that the double mutant qYRLKHvVW corresponding to positions with the second and third lowest h values, was the infecting strain and stayed at 100% till day 165. On d476 it was 38.5% of the circulating viral population.


Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.

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