Found 16 matching records:
HXB2 Location | Gag(203-212) | Gag Epitope Map
View variants at this location |
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Epitope |
ETINEEAAEW
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(A*25:01) |
Showing all: 1 variant(s).
Variant ID. | 3247 |
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Epitope Seq. | ETINEEAAEW |
Variant Seq. | ETINdEAAEW |
Mutations | E/D |
Epitope Location | E5D |
HXB2 Location | E207D |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = 27, suggesting partial escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Pol(24-31) | Pol Epitope Map
View variants at this location |
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Epitope |
NSPTRREL
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human(C*01:02) |
Showing all: 2 variant(s).
Variant ID. | 3248 |
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Epitope Seq. | NSPTRREL |
Variant Seq. | NSPTsptRREL |
Mutations | -/S -/P -/T |
Epitope Location | -(4.1)S -(4.2)P -(4.3)T |
HXB2 Location | -(27.1)S -(27.2)P -(27.3)T |
Mutation Type | E: escape documented in this paper I: insertion |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Variant ID. | 3249 |
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Epitope Seq. | NSPTRREL |
Variant Seq. | tSPTRREL |
Mutations | N/T |
Epitope Location | N1T |
HXB2 Location | N24T |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Pol(283-290) | Pol Epitope Map
View variants at this location |
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Epitope |
TAFTIPSI
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Epitope Alignment | ||||||||||
Variants |
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Species (MHC/HLA) | human(B*51:01) |
Showing all: 3 variant(s).
Variant ID. | 3250 |
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Epitope Seq. | TAFTIPSI |
Variant Seq. | TAFTIPSt |
Mutations | I/T |
Epitope Location | I8T |
HXB2 Location | I290T |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = >100, suggesting partial escape. |
Variant ID. | 3251 |
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Epitope Seq. | TAFTIPSI |
Variant Seq. | TAFTIPSr |
Mutations | I/R |
Epitope Location | I8R |
HXB2 Location | I290R |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope, EC50ratio = >100, suggesting partial escape. |
Variant ID. | 3252 |
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Epitope Seq. | TAFTIPSI |
Variant Seq. | TAFTIPSv |
Mutations | I/V |
Epitope Location | I8V |
HXB2 Location | I290V |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = >100, suggesting partial escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Pol(291-299) | Pol Epitope Map
View variants at this location |
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Epitope |
NNETPGVRY
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(B*18:01) |
Showing all: 1 variant(s).
Variant ID. | 3253 |
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Epitope Seq. | NNETPGVRY |
Variant Seq. | NNgTPGVRY |
Mutations | E/G |
Epitope Location | E3G |
HXB2 Location | E293G |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = 22, suggesting partial escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Pol(359-367) | Pol Epitope Map
View variants at this location |
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Epitope |
ELRQHLLRW
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(A*25:01) |
Showing all: 1 variant(s).
Variant ID. | 3254 |
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Epitope Seq. | ELRQHLLRW |
Variant Seq. | ELRQHLLkW |
Mutations | R/K |
Epitope Location | R8K |
HXB2 Location | R366K |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Vpr(29-37) | Vpr Epitope Map
View variants at this location |
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Epitope |
EAVRHFPRI
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human(B*51:01) |
Showing all: 2 variant(s).
Variant ID. | 3255 |
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Epitope Seq. | EAVRHFPRI |
Variant Seq. | EAVRHFPRt |
Mutations | I/T |
Epitope Location | I9T |
HXB2 Location | I37T |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = 43, suggesting partial escape. |
Variant ID. | 3256 |
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Epitope Seq. | EAVRHFPRI |
Variant Seq. | EAVRHFPRl |
Mutations | I/L |
Epitope Location | I9L |
HXB2 Location | I37L |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = 18, suggesting partial escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Tat(3-11) | Tat Epitope Map
View variants at this location |
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Epitope |
PVDPRLEPW
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Epitope Alignment | ||||||||||
Variants |
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Species (MHC/HLA) | human(A*25:01) |
Showing all: 3 variant(s).
Variant ID. | 3257 |
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Epitope Seq. | PVDPRLEPW |
Variant Seq. | PVDPRLdPW |
Mutations | E/D |
Epitope Location | E7D |
HXB2 Location | E9D |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Variant ID. | 3258 |
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Epitope Seq. | PVDPRLEPW |
Variant Seq. | PVDPsLEPW |
Mutations | R/S |
Epitope Location | R5S |
HXB2 Location | R7S |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Variant ID. | 3259 |
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Epitope Seq. | PVDPRLEPW |
Variant Seq. | PVDPkLEPW |
Mutations | R/K |
Epitope Location | R5K |
HXB2 Location | R7K |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Tat(30-37) | Tat Epitope Map
View variants at this location |
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Epitope |
CCFHCQVC
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human(C*12:03) |
Showing all: 2 variant(s).
Variant ID. | 3260 |
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Epitope Seq. | CCFHCQVC |
Variant Seq. | CClHCQVC |
Mutations | F/L |
Epitope Location | F3L |
HXB2 Location | F32L |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Variant ID. | 3261 |
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Epitope Seq. | CCFHCQVC |
Variant Seq. | CCFHCQsC |
Mutations | V/S |
Epitope Location | V7S |
HXB2 Location | V36S |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Env(31-39) | Env Epitope Map
View variants at this location |
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Epitope |
AENLWVTVY
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Epitope Alignment | ||||||||||
Variants |
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Species (MHC/HLA) | human(B*18:01) |
Showing all: 3 variant(s).
Variant ID. | 3262 |
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Epitope Seq. | AENLWVTVY |
Variant Seq. | TEdLWVTVY |
Mutations | A/T N/D |
Epitope Location | A1T N3D |
HXB2 Location | A31T N33D |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Variant ID. | 3263 |
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Epitope Seq. | AENLWVTVY |
Variant Seq. | eEDLWVTVY |
Mutations | A/E N/D |
Epitope Location | A1E N3D |
HXB2 Location | A31E N33D |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Variant ID. | 3264 |
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Epitope Seq. | AENLWVTVY |
Variant Seq. | AEdsWVTVY |
Mutations | N/D L/S |
Epitope Location | N3D L4S |
HXB2 Location | N33D L34S |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Env(61-69) | Env Epitope Map
View variants at this location |
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Epitope |
YETEVHNVW
|
Epitope Alignment | ||||||||||
Variants |
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Species (MHC/HLA) | human(B*18:01) |
Showing all: 3 variant(s).
Variant ID. | 3265 |
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Epitope Seq. | YETEVHNVW |
Variant Seq. | YgTEVHNVW |
Mutations | E/G |
Epitope Location | E2G |
HXB2 Location | E62G |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = 22, suggesting partial escape. |
Variant ID. | 3266 |
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Epitope Seq. | YETEVHNVW |
Variant Seq. | YdTEVHNVW |
Mutations | E/D |
Epitope Location | E2D |
HXB2 Location | E62D |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = 13, suggesting partial escape. |
Variant ID. | 3267 |
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Epitope Seq. | YETEVHNVW |
Variant Seq. | YdTEaHNVW |
Mutations | E/D V/A |
Epitope Location | E2D V5A |
HXB2 Location | E62D V65A |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = >83, suggesting partial escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Env(88-96) | Env Epitope Map
View variants at this location |
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Epitope |
NVTENFNMW
|
Epitope Alignment | ||||||||||
Variants |
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Species (MHC/HLA) | human(A*25:01) |
Showing all: 3 variant(s).
Variant ID. | 3268 |
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Epitope Seq. | NVTENFNMW |
Variant Seq. | NVTEdFdMW |
Mutations | N/D N/D |
Epitope Location | N5D N7D |
HXB2 Location | N92D N94D |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Variant ID. | 3269 |
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Epitope Seq. | NVTENFNMW |
Variant Seq. | NVTEeFdMW |
Mutations | N/E N/D |
Epitope Location | N5E N7D |
HXB2 Location | N92E N94D |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Variant ID. | 3270 |
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Epitope Seq. | NVTENFNMW |
Variant Seq. | NVTEsFdMW |
Mutations | N/S N/D |
Epitope Location | N5S N7D |
HXB2 Location | N92S N94D |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Env(217-226) | Env Epitope Map
View variants at this location |
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Epitope |
YCAPAGFAIL
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(C*01:02) |
Showing all: 1 variant(s).
Variant ID. | 3271 |
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Epitope Seq. | YCAPAGFAIL |
Variant Seq. | YCAPAGFAIi |
Mutations | L/I |
Epitope Location | L10I |
HXB2 Location | L226I |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Env(321-330) | Env Epitope Map
View variants at this location |
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Epitope |
EIIGDIRQAY
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Epitope Alignment | |||||||||||||
Variants |
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Species (MHC/HLA) | human(A*25:01) |
Showing all: 4 variant(s).
Variant ID. | 3272 |
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Epitope Seq. | EIIGDIRQAY |
Variant Seq. | qIIGDIRQAY |
Mutations | E/Q |
Epitope Location | E1Q |
HXB2 Location | E321Q |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = >200, suggesting partial escape. |
Variant ID. | 3273 |
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Epitope Seq. | EIIGDIRQAY |
Variant Seq. | dIIGDIRQAh |
Mutations | E/D Y/H |
Epitope Location | E1D Y10H |
HXB2 Location | E321D Y330H |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = 34, suggesting partial escape. |
Variant ID. | 3274 |
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Epitope Seq. | EIIGDIRQAY |
Variant Seq. | EIIGnIRQAh |
Mutations | Y/H D/N |
Epitope Location | Y10H D5N |
HXB2 Location | Y330H D325N |
Mutation Type | DR: diminished response |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | Ratio of EliSpot peptide titration of this mutant to original epitope EC50ratio = 15.9, suggesting partial escape. |
Variant ID. | 3275 |
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Epitope Seq. | EIIGDIRQAY |
Variant Seq. | EIIGDIRQAh |
Mutations | Y/H |
Epitope Location | Y10H |
HXB2 Location | Y330H |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Env(341-349) | Env Epitope Map
View variants at this location |
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Epitope |
TLSQIVTKL
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Epitope Alignment | ||||
Variants |
|
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Species (MHC/HLA) | human(A*02:01) |
Showing all: 1 variant(s).
Variant ID. | 3276 |
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Epitope Seq. | TLSQIVTKL |
Variant Seq. | TLSkIVTKL |
Mutations | Q/K |
Epitope Location | Q4K |
HXB2 Location | Q344K |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Env(712-720) | Env Epitope Map
View variants at this location |
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Epitope |
YSPLSLQTL
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(C*01:02) |
Showing all: 1 variant(s).
Variant ID. | 3277 |
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Epitope Seq. | YSPLSLQTL |
Variant Seq. | YSPLSLQTr |
Mutations | L/R |
Epitope Location | L9R |
HXB2 Location | L720R |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
HXB2 Location | Nef(5-13) | Nef Epitope Map
View variants at this location |
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Epitope |
WSKSSIIGW
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human(A*25:01) |
Showing all: 2 variant(s).
Variant ID. | 3278 |
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Epitope Seq. | WSKSSIIGW |
Variant Seq. | WSKtSIIGW |
Mutations | S/T |
Epitope Location | S4T |
HXB2 Location | S8T |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Variant ID. | 3279 |
---|---|
Epitope Seq. | WSKSSIIGW |
Variant Seq. | WSKSSmIGW |
Mutations | I/M |
Epitope Location | I6M |
HXB2 Location | I10M |
Mutation Type | E: escape documented in this paper |
Epitope Subtype | B |
Variant Subtype | B |
Method | Peptide titration |
Note | EliSpot peptide titration indicated full escape. |
Liu2007a Yi Liu, John McNevin, Hong Zhao, Denis M. Tebit, Ryan M. Troyer, Matthew McSweyn, Ananta K. Ghosh, Daniel Shriner, Eric J. Arts, M. Juliana McElrath, and James I. Mullins. Evolution of Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitopes: Fitness-Balanced Escape. J. Virol., 81(22):12179-12188, Nov 2007. PubMed ID: 17728222. Show all entries for this paper.
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