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Found 6 matching records:

Displaying record number 55233

HXB2 Location  Gag(18-26)   Gag Epitope Map
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Epitope KIRLRPGGK   Epitope Alignment
Variants
KIRLRPGGr   inferred escape
KIRLRPGGK{Kr}   observed variant
Species (MHC/HLA human(A3)

Variant Details

Showing all: 2 variant(s).


Variant ID.  790
Epitope Seq.  KIRLRPGGK
Variant Seq.  KIRLRPGGr
Mutations K/R
Epitope Location K9R
HXB2 Location K26R
Mutation Type IE: inferred escape
Variant Subtype B
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This variant developed in B1 to include 42% of the viruses within 4 years.


Variant ID.  2325
Epitope Seq.  KIRLRPGGK{KS}
Variant Seq.  KIRLRPGGK{Kr}
Mutations S/R
Epitope Location S+2R
HXB2 Location S28R
Mutation Type OV: observed variant
Variant Subtype B
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B2.

References

Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.


Displaying record number 55238

HXB2 Location  Gag(74-82)   Gag Epitope Map
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Epitope ELRSLYNTV   Epitope Alignment
Variants
ELkSLYNTV   observed variant
ELkSLYNTi   inferred escape
ELkSLfNTV   observed variant
ELKSLyNTV   reversion
Species (MHC/HLA human(B8)

Variant Details

Showing all: 4 variant(s).


Variant ID.  791
Epitope Seq.  ELRSLYNTV
Variant Seq.  ELkSLYNTV
Mutations R/K
Epitope Location R3K
HXB2 Location R76K
Mutation Type OV: observed variant
Variant Subtype B, CRF01_AE
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in CRF01_AE and it did not change over time. It was also the infecting variant in B1.


Variant ID.  792
Epitope Seq.  ELRSLYNTV
Variant Seq.  ELkSLYNTi
Mutations R/K V/I
Epitope Location R3K V9I
HXB2 Location R76K V82I
Mutation Type IE: inferred escape
Variant Subtype B
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This variant developed in B1 to include 50% of the viruses within 4 years.


Variant ID.  793
Epitope Seq.  ELRSLYNTV
Variant Seq.  ELkSLfNTV
Mutations R/K Y/F
Epitope Location R3K Y6F
HXB2 Location R76K Y79F
Mutation Type OV: observed variant
Variant Subtype B
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B2.


Variant ID.  2257
Epitope Seq.  ELKSLFNTV
Variant Seq.  ELKSLyNTV
Mutations F/Y
Epitope Location F6Y
HXB2 Location F79Y
Mutation Type R: reversion
Epitope Subtype B
Variant Subtype B
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. The B2 variant is epitope ELKSLFNTV and reversion variant ELKSLyNTV developed in B2 to include 67% of the viruses within 3 years.

References

Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.


Displaying record number 55237

HXB2 Location  Gag(93-101)   Gag Epitope Map
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Epitope EIKDTKEAL   Epitope Alignment
Variants
EvKDTKEAL   observed variant
dvKDTKEAL   observed variant
EIlDTKEAL   observed variant
dIKDTKEAL   reversion
Species (MHC/HLA human(B8)

Variant Details

Showing all: 4 variant(s).


Variant ID.  795
Epitope Seq.  EIKDTKEAL
Variant Seq.  EvKDTKEAL
Mutations I/V
Epitope Location I2V
HXB2 Location I94V
Mutation Type OV: observed variant
Variant Subtype B
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B1.


Variant ID.  797
Epitope Seq.  EIKDTKEAL
Variant Seq.  dvKDTKEAL
Mutations E/D I/V
Epitope Location E1D I2V
HXB2 Location E93D I94V
Mutation Type OV: observed variant
Variant Subtype B
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B2 and it did not change over time.


Variant ID.  798
Epitope Seq.  EIKDTKEAL
Variant Seq.  EIlDTKEAL
Mutations K/L
Epitope Location K3L
HXB2 Location K95L
Mutation Type OV: observed variant
Variant Subtype CRF01_AE
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in CRF01_AE and it did not change over time.


Variant ID.  2258
Epitope Seq.  EIKDTKEAL
Variant Seq.  dIKDTKEAL
Mutations E/D
Epitope Location E1D
HXB2 Location E93D
Mutation Type R: reversion
Variant Subtype B
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This reversion variant developed in B1 to include 83% of the viruses within 4 years.

References

Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.


Displaying record number 55234

HXB2 Location  Gag(140-153)   Gag Epitope Map
View variants at this location
Epitope GQMVHQAISPRTLN   Epitope Alignment
Variants
GQMVHQpISPRTLN   observed variant
GQMVHQpvSPRTLN   observed variant
Species (MHC/HLA human(A3, Cw3)

Variant Details

Showing all: 2 variant(s).


Variant ID.  799
Epitope Seq.  GQMVHQAISPRTLN
Variant Seq.  GQMVHQpISPRTLN
Mutations A/P
Epitope Location A7P
HXB2 Location A146P
Mutation Type OV: observed variant
Variant Subtype B
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B1 and B2, and it did not change over time.


Variant ID.  800
Epitope Seq.  GQMVHQAISPRTLN
Variant Seq.  GQMVHQpvSPRTLN
Mutations A/P I/V
Epitope Location A7P I8V
HXB2 Location A146P I147V
Mutation Type OV: observed variant
Variant Subtype CRF01_AE
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in CRF01_AE and it did not change over time.

References

Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.


Displaying record number 55229

HXB2 Location  Gag(173-192)   Gag Epitope Map
View variants at this location
Epitope SALSEGATPQDLNTMLNTVG   Epitope Alignment
Variants
SALSEGATPQDLNmMLNiVG   observed variant
tALSEGATPQDLNTMLNTVG   inferred escape
Species (MHC/HLA human

Variant Details

Showing all: 2 variant(s).


Variant ID.  801
Epitope Seq.  SALSEGATPQDLNTMLNTVG
Variant Seq.  SALSEGATPQDLNmMLNiVG
Mutations T/M T/I
Epitope Location T14M T18I
HXB2 Location T186M T190I
Mutation Type OV: observed variant
Variant Subtype CRF01_AE
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in CRF01_AE and it did not change over time.


Variant ID.  802
Epitope Seq.  SALSEGATPQDLNTMLNTVG
Variant Seq.  tALSEGATPQDLNTMLNTVG
Mutations S/T
Epitope Location S1T
HXB2 Location S173T
Mutation Type IE: inferred escape
Variant Subtype B
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This variant developed in B1 to include 92% of the viruses within 4 years, and in B2 to include 96% of the viruses within 3 years.

References

Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.


Displaying record number 55235

HXB2 Location  gp160(296-305)   gp160 Epitope Map
View variants at this location
Epitope CTRPNNNTRK   Epitope Alignment
Variants
CTRPsNNTRK   observed variant
CTRPsNNTRt   observed variant
Species (MHC/HLA human(A3)

Variant Details

Showing all: 2 variant(s).


Variant ID.  803
Epitope Seq.  CTRPNNNTRK
Variant Seq.  CTRPsNNTRK
Mutations N/S
Epitope Location N5S
HXB2 Location N300S
Mutation Type OV: observed variant
Variant Subtype B
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B1 and B2, and it did not change over time.


Variant ID.  804
Epitope Seq.  CTRPNNNTRK
Variant Seq.  CTRPsNNTRt
Mutations K/T N/S
Epitope Location K10T N5S
HXB2 Location K305T N300S
Mutation Type OV: observed variant
Variant Subtype CRF01_AE
Method Sequence
Note Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in CRF01_AE and it did not change over time.

References

Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.


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