Found 6 matching records:
HXB2 Location | Gag(18-26) | Gag Epitope Map
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Epitope |
KIRLRPGGK
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human(A3) |
Showing all: 2 variant(s).
Variant ID. | 790 |
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Epitope Seq. | KIRLRPGGK |
Variant Seq. | KIRLRPGGr |
Mutations | K/R |
Epitope Location | K9R |
HXB2 Location | K26R |
Mutation Type | IE: inferred escape |
Variant Subtype | B |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This variant developed in B1 to include 42% of the viruses within 4 years. |
Variant ID. | 2325 |
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Epitope Seq. | KIRLRPGGK{KS} |
Variant Seq. | KIRLRPGGK{Kr} |
Mutations | S/R |
Epitope Location | S+2R |
HXB2 Location | S28R |
Mutation Type | OV: observed variant |
Variant Subtype | B |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B2. |
Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.
HXB2 Location | Gag(74-82) | Gag Epitope Map
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Epitope |
ELRSLYNTV
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Epitope Alignment | |||||||||||||
Variants |
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Species (MHC/HLA) | human(B8) |
Showing all: 4 variant(s).
Variant ID. | 791 |
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Epitope Seq. | ELRSLYNTV |
Variant Seq. | ELkSLYNTV |
Mutations | R/K |
Epitope Location | R3K |
HXB2 Location | R76K |
Mutation Type | OV: observed variant |
Variant Subtype | B, CRF01_AE |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in CRF01_AE and it did not change over time. It was also the infecting variant in B1. |
Variant ID. | 792 |
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Epitope Seq. | ELRSLYNTV |
Variant Seq. | ELkSLYNTi |
Mutations | R/K V/I |
Epitope Location | R3K V9I |
HXB2 Location | R76K V82I |
Mutation Type | IE: inferred escape |
Variant Subtype | B |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This variant developed in B1 to include 50% of the viruses within 4 years. |
Variant ID. | 793 |
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Epitope Seq. | ELRSLYNTV |
Variant Seq. | ELkSLfNTV |
Mutations | R/K Y/F |
Epitope Location | R3K Y6F |
HXB2 Location | R76K Y79F |
Mutation Type | OV: observed variant |
Variant Subtype | B |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B2. |
Variant ID. | 2257 |
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Epitope Seq. | ELKSLFNTV |
Variant Seq. | ELKSLyNTV |
Mutations | F/Y |
Epitope Location | F6Y |
HXB2 Location | F79Y |
Mutation Type | R: reversion |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. The B2 variant is epitope ELKSLFNTV and reversion variant ELKSLyNTV developed in B2 to include 67% of the viruses within 3 years. |
Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.
HXB2 Location | Gag(93-101) | Gag Epitope Map
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Epitope |
EIKDTKEAL
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Epitope Alignment | |||||||||||||
Variants |
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Species (MHC/HLA) | human(B8) |
Showing all: 4 variant(s).
Variant ID. | 795 |
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Epitope Seq. | EIKDTKEAL |
Variant Seq. | EvKDTKEAL |
Mutations | I/V |
Epitope Location | I2V |
HXB2 Location | I94V |
Mutation Type | OV: observed variant |
Variant Subtype | B |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B1. |
Variant ID. | 797 |
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Epitope Seq. | EIKDTKEAL |
Variant Seq. | dvKDTKEAL |
Mutations | E/D I/V |
Epitope Location | E1D I2V |
HXB2 Location | E93D I94V |
Mutation Type | OV: observed variant |
Variant Subtype | B |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B2 and it did not change over time. |
Variant ID. | 798 |
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Epitope Seq. | EIKDTKEAL |
Variant Seq. | EIlDTKEAL |
Mutations | K/L |
Epitope Location | K3L |
HXB2 Location | K95L |
Mutation Type | OV: observed variant |
Variant Subtype | CRF01_AE |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in CRF01_AE and it did not change over time. |
Variant ID. | 2258 |
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Epitope Seq. | EIKDTKEAL |
Variant Seq. | dIKDTKEAL |
Mutations | E/D |
Epitope Location | E1D |
HXB2 Location | E93D |
Mutation Type | R: reversion |
Variant Subtype | B |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This reversion variant developed in B1 to include 83% of the viruses within 4 years. |
Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.
HXB2 Location | Gag(140-153) | Gag Epitope Map
View variants at this location |
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Epitope |
GQMVHQAISPRTLN
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human(A3, Cw3) |
Showing all: 2 variant(s).
Variant ID. | 799 |
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Epitope Seq. | GQMVHQAISPRTLN |
Variant Seq. | GQMVHQpISPRTLN |
Mutations | A/P |
Epitope Location | A7P |
HXB2 Location | A146P |
Mutation Type | OV: observed variant |
Variant Subtype | B |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B1 and B2, and it did not change over time. |
Variant ID. | 800 |
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Epitope Seq. | GQMVHQAISPRTLN |
Variant Seq. | GQMVHQpvSPRTLN |
Mutations | A/P I/V |
Epitope Location | A7P I8V |
HXB2 Location | A146P I147V |
Mutation Type | OV: observed variant |
Variant Subtype | CRF01_AE |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in CRF01_AE and it did not change over time. |
Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.
HXB2 Location | Gag(173-192) | Gag Epitope Map
View variants at this location |
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Epitope |
SALSEGATPQDLNTMLNTVG
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human |
Showing all: 2 variant(s).
Variant ID. | 801 |
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Epitope Seq. | SALSEGATPQDLNTMLNTVG |
Variant Seq. | SALSEGATPQDLNmMLNiVG |
Mutations | T/M T/I |
Epitope Location | T14M T18I |
HXB2 Location | T186M T190I |
Mutation Type | OV: observed variant |
Variant Subtype | CRF01_AE |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in CRF01_AE and it did not change over time. |
Variant ID. | 802 |
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Epitope Seq. | SALSEGATPQDLNTMLNTVG |
Variant Seq. | tALSEGATPQDLNTMLNTVG |
Mutations | S/T |
Epitope Location | S1T |
HXB2 Location | S173T |
Mutation Type | IE: inferred escape |
Variant Subtype | B |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This variant developed in B1 to include 92% of the viruses within 4 years, and in B2 to include 96% of the viruses within 3 years. |
Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.
HXB2 Location | Env(296-305) | Env Epitope Map
View variants at this location |
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Epitope |
CTRPNNNTRK
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human(A3) |
Showing all: 2 variant(s).
Variant ID. | 803 |
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Epitope Seq. | CTRPNNNTRK |
Variant Seq. | CTRPsNNTRK |
Mutations | N/S |
Epitope Location | N5S |
HXB2 Location | N300S |
Mutation Type | OV: observed variant |
Variant Subtype | B |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in B1 and B2, and it did not change over time. |
Variant ID. | 804 |
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Epitope Seq. | CTRPNNNTRK |
Variant Seq. | CTRPsNNTRt |
Mutations | K/T N/S |
Epitope Location | K10T N5S |
HXB2 Location | K305T N300S |
Mutation Type | OV: observed variant |
Variant Subtype | CRF01_AE |
Method | Sequence |
Note | Patient was superinfected with three strains, B1, B2 and CRF01_AE. This was the infecting variant in CRF01_AE and it did not change over time. |
Kozaczynska2007 Karolina Kozaczynska, Marion Cornelissen, Peter Reiss, Fokla Zorgdrager, and Antoinette C. van der Kuyl. HIV-1 Sequence Evolution In Vivo after Superinfection with Three Viral Strains. Retrovirology, 4:59, 2007. PubMed ID: 17716368. Show all entries for this paper.
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