Found 7 matching records:
HXB2 Location | Gag(146-155) | Gag Epitope Map
View variants at this location |
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Epitope |
AISPRTLNAW
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Epitope Alignment | ||||||||||
Variants |
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Epitope Name | Gag-IW9 | |||||||||||
Species (MHC/HLA) | human(B*57:02, B*57:03, B*58:01) |
Showing all: 3 variant(s).
Variant ID. | 4057 |
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Epitope Seq. | AISPRTLNAW |
Variant Seq. | pISPRTLNAW |
Mutations | A/P |
Epitope Location | A1P |
HXB2 Location | A146P |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, pISPRTLNAW, was associated more strongly with HLAs-B*5702 and B*5703 than with HLA-B*5801. |
Variant ID. | 4058 |
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Epitope Seq. | AISPRTLNAW |
Variant Seq. | AlSPRTLNAW |
Mutations | I/L |
Epitope Location | I2L |
HXB2 Location | I147L |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, AlSPRTLNAW, was associated more strongly with HLAs-B*5702 and B*5703 than with HLA-B*5801. |
Variant ID. | 4059 |
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Epitope Seq. | AISPRTLNAW |
Variant Seq. | AmSPRTLNAW |
Mutations | I/M |
Epitope Location | I2M |
HXB2 Location | I147M |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, AmSPRTLNAW, was associated more strongly with HLA-B*5703 than with HLA-B*5801. |
Carlson2012 Jonathan M. Carlson, Jennifer Listgarten, Nico Pfeifer, Vincent Tan, Carl Kadie, Bruce D. Walker, Thumbi Ndung'u, Roger Shapiro, John Frater, Zabrina L. Brumme, Philip J. R. Goulder, and David Heckerman. Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1. J. Virol., 86(9):5230-5243, May 2012. PubMed ID: 22379086. Show all entries for this paper.
HXB2 Location | Gag(161-172) | Gag Epitope Map
View variants at this location |
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Epitope |
EKAFSPEVIPMF
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Epitope Alignment | ||||||||||||||||
Variants |
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Epitope Name | Gag-KF11 | |||||||||||||||||
Species (MHC/HLA) | human(B*57:03, B*58:01) |
Showing all: 5 variant(s).
Variant ID. | 4060 |
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Epitope Seq. | EKAFSPEVIPMF |
Variant Seq. | dKAFSPEVIPMF |
Mutations | E/D |
Epitope Location | E1D |
HXB2 Location | E161D |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy, Computer prediction |
Note | HLA-associated escape, dKAFSPEVIPMF, was associated more strongly with HLA-B*5703 than with HLA-B*5801. |
Variant ID. | 4061 |
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Epitope Seq. | EKAFSPEVIPMF |
Variant Seq. | EKsFSPEVIPMF |
Mutations | A/S |
Epitope Location | A3S |
HXB2 Location | A163S |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy, Computer prediction |
Note | HLA-associated escape, EKsFSPEVIPMF, was associated more strongly with HLA-B*5703 than with HLA-B*5801. |
Variant ID. | 4062 |
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Epitope Seq. | EKAFSPEVIPMF |
Variant Seq. | EKAFnPEVIPMF |
Mutations | S/N |
Epitope Location | S5N |
HXB2 Location | S165N |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy, Computer prediction |
Note | HLA-associated escape, EKAFnPEVIPMF, was associated more strongly with HLA-B*5703 than with HLAs-B*5801 and B*5702. |
Variant ID. | 4063 |
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Epitope Seq. | EKAFSPEVIPMF |
Variant Seq. | EKgFSPEVIPMF |
Mutations | A/G |
Epitope Location | A3G |
HXB2 Location | A163G |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy, Computer prediction |
Note | HLA-associated escape, EKgFSPEVIPMF, was associated more strongly with HLA-B*5703 than with HLAs-B*5801 and B*5702. |
Variant ID. | 4064 |
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Epitope Seq. | EKAFSPEVIPMF |
Variant Seq. | EKAFkPEVIPMF |
Mutations | S/K |
Epitope Location | S5K |
HXB2 Location | S165K |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy, Computer prediction |
Note | HLA-associated escape, EKAFkPEVIPMF, was associated most strongly with HLA-B*5703. |
Carlson2012 Jonathan M. Carlson, Jennifer Listgarten, Nico Pfeifer, Vincent Tan, Carl Kadie, Bruce D. Walker, Thumbi Ndung'u, Roger Shapiro, John Frater, Zabrina L. Brumme, Philip J. R. Goulder, and David Heckerman. Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1. J. Virol., 86(9):5230-5243, May 2012. PubMed ID: 22379086. Show all entries for this paper.
HXB2 Location | Gag(240-249) | Gag Epitope Map
View variants at this location |
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Epitope |
TSTLQEQIAW
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Epitope Alignment | ||||||||||
Variants |
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Epitope Name | Gag-TW10 | |||||||||||
Species (MHC/HLA) | human(B*57:03, B*58:01) |
Showing all: 3 variant(s).
Variant ID. | 4065 |
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Epitope Seq. | TSTLQEQIAW |
Variant Seq. | TSTLQEQvAW |
Mutations | I/V |
Epitope Location | I8V |
HXB2 Location | I168V |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, TSTLQEQvAW, was associated more strongly with HLA-B*5703 than with HLA-B*5801. |
Variant ID. | 4066 |
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Epitope Seq. | TSTLQEQIAW |
Variant Seq. | TSnLQEQIAW |
Mutations | T/N |
Epitope Location | T3N |
HXB2 Location | T163N |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, TSnLQEQIAW, was associated all three HLAs-B*5702, B*5703, and B*5801. |
Variant ID. | 4067 |
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Epitope Seq. | TSTLQEQIAW |
Variant Seq. | TSTLQEQmAW |
Mutations | I/M |
Epitope Location | I8M |
HXB2 Location | I168M |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, TSTLQEQmAW, was associated more strongly with HLA-B*5702 than with HLA-B*5801. |
Carlson2012 Jonathan M. Carlson, Jennifer Listgarten, Nico Pfeifer, Vincent Tan, Carl Kadie, Bruce D. Walker, Thumbi Ndung'u, Roger Shapiro, John Frater, Zabrina L. Brumme, Philip J. R. Goulder, and David Heckerman. Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1. J. Virol., 86(9):5230-5243, May 2012. PubMed ID: 22379086. Show all entries for this paper.
HXB2 Location | Gag(308-316) | Gag Epitope Map
View variants at this location |
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Epitope |
QATQDVKNW
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Epitope Alignment | |||||||
Variants |
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Epitope Name | Gag-QW9 | ||||||||
Species (MHC/HLA) | human(B*58:01) |
Showing all: 2 variant(s).
Variant ID. | 4068 |
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Epitope Seq. | QATQDVKNW |
Variant Seq. | QsTQDVKNW |
Mutations | A/S |
Epitope Location | A2S |
HXB2 Location | A309S |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, QsTQDVKNW, was associated with HLA-B*5801. |
Variant ID. | 4069 |
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Epitope Seq. | QATQDVKNW |
Variant Seq. | QAsQDVKNW |
Mutations | T/S |
Epitope Location | T3S |
HXB2 Location | T310S |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, QAsQDVKNW, was associated more strongly with HLA-B*5801 than with HLAs-B*5702 or -5703. |
Carlson2012 Jonathan M. Carlson, Jennifer Listgarten, Nico Pfeifer, Vincent Tan, Carl Kadie, Bruce D. Walker, Thumbi Ndung'u, Roger Shapiro, John Frater, Zabrina L. Brumme, Philip J. R. Goulder, and David Heckerman. Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1. J. Virol., 86(9):5230-5243, May 2012. PubMed ID: 22379086. Show all entries for this paper.
HXB2 Location | Pol(530-538) | Pol Epitope Map
View variants at this location |
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Epitope |
IAMESIVIW
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Epitope Alignment | |||||||||||||
Variants |
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Epitope Name | RT-IW9 | ||||||||||||||
Species (MHC/HLA) | human(B*58:01) |
Showing all: 4 variant(s).
Variant ID. | 4070 |
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Epitope Seq. | IAMESIVIW |
Variant Seq. | vAMESIVIW |
Mutations | I/V |
Epitope Location | I1V |
HXB2 Location | I530V |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, vAMESIVIW, was more significantly associated with HLA-B*5801 than with B*5703. |
Variant ID. | 4071 |
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Epitope Seq. | IAMESIVIW |
Variant Seq. | IAqESIVIW |
Mutations | M/Q |
Epitope Location | M3Q |
HXB2 Location | M532Q |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, IAqESIVIW, was more significantly associated with HLA-B*5801 than with B*5703. |
Variant ID. | 4072 |
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Epitope Seq. | IAMESIVIW |
Variant Seq. | IAtESIVIW |
Mutations | M/T |
Epitope Location | M3T |
HXB2 Location | M532T |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, IAtESIVIW, was associated with HLA-B*5801. |
Variant ID. | 4073 |
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Epitope Seq. | IAMESIVIW |
Variant Seq. | IAMEaIVIW |
Mutations | S/A |
Epitope Location | S5A |
HXB2 Location | S534A |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, IAMEaIVIW, was associated with HLA-B*5801. |
Carlson2012 Jonathan M. Carlson, Jennifer Listgarten, Nico Pfeifer, Vincent Tan, Carl Kadie, Bruce D. Walker, Thumbi Ndung'u, Roger Shapiro, John Frater, Zabrina L. Brumme, Philip J. R. Goulder, and David Heckerman. Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1. J. Virol., 86(9):5230-5243, May 2012. PubMed ID: 22379086. Show all entries for this paper.
HXB2 Location | Nef(82-91) | Nef Epitope Map
View variants at this location |
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Epitope |
KAAFDLSFFL
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Epitope Alignment | ||||
Variants |
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Epitope Name | Nef-KL10 | |||||
Species (MHC/HLA) | human(B*57:02, B*57:03, B*58:01) |
Showing all: 1 variant(s).
Variant ID. | 4074 |
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Epitope Seq. | KAAFDLSFFL |
Variant Seq. | KgAFDLSFFL |
Mutations | A/G |
Epitope Location | A2G |
HXB2 Location | A83G |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, KgAFDLSFFL, was more significantly associated with HLA-B*5801 than with B*5703. |
Carlson2012 Jonathan M. Carlson, Jennifer Listgarten, Nico Pfeifer, Vincent Tan, Carl Kadie, Bruce D. Walker, Thumbi Ndung'u, Roger Shapiro, John Frater, Zabrina L. Brumme, Philip J. R. Goulder, and David Heckerman. Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1. J. Virol., 86(9):5230-5243, May 2012. PubMed ID: 22379086. Show all entries for this paper.
HXB2 Location | Nef(116-124) | Nef Epitope Map
View variants at this location |
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Epitope |
HTQGFFPDW
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Epitope Alignment | ||||
Variants |
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Epitope Name | Nef-HW9 | |||||
Species (MHC/HLA) | human(B*35:01, B*53:01) |
Showing all: 1 variant(s).
Variant ID. | 4075 |
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Epitope Seq. | HTQGFFPDW |
Variant Seq. | nTQGFFPDW |
Mutations | H/N |
Epitope Location | H1N |
HXB2 Location | H116N |
Mutation Type | A: HLA association |
Epitope Subtype | C |
Variant Subtype | C |
Method | CD8 T-cell Elispot - IFNy |
Note | HLA-associated escape, nTQGFFPDW, was more significantly associated with HLA-B*5703 than with B*5801. |
Carlson2012 Jonathan M. Carlson, Jennifer Listgarten, Nico Pfeifer, Vincent Tan, Carl Kadie, Bruce D. Walker, Thumbi Ndung'u, Roger Shapiro, John Frater, Zabrina L. Brumme, Philip J. R. Goulder, and David Heckerman. Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1. J. Virol., 86(9):5230-5243, May 2012. PubMed ID: 22379086. Show all entries for this paper.
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