HIV molecular immunology database
Found 1 matching record:
| HXB2 Location | Gag(24-31) | Gag Epitope Map
View variants at this location |
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| Epitope |
GGKKKYKL
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Epitope Alignment | |||||||||||||||||||
| Variants |
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| Species (MHC/HLA) | human(B8) | ||||||||||||||||||||
Showing all: 6 variant(s).
| Variant ID. | 1104 |
|---|---|
| Epitope Seq. | GGKKKYKL |
| Variant Seq. | GGKKKYrL |
| Mutations | K/R |
| Epitope Location | K7R |
| HXB2 Location | K30R |
| Mutation Type | SNSF: subtype-specific non-susceptible form |
| Epitope Subtype | B |
| Method | Chromium-release assay |
| Note | This circulating Ugandan variant was not recognized by a CTL clone from a patient infected with Clade B virus. |
| Variant ID. | 1105 |
|---|---|
| Epitope Seq. | GGKKKYKL |
| Variant Seq. | GGnKrYrL |
| Mutations | K/N K/R K/R |
| Epitope Location | K3N K5R K7R |
| HXB2 Location | K26N K28R K30R |
| Mutation Type | SNSF: subtype-specific non-susceptible form |
| Epitope Subtype | B |
| Method | Chromium-release assay |
| Note | A peptide containing this circulating Ugandan variant was not recognized by a CTL clone from a Clade B-infected patient. |
| Variant ID. | 1106 |
|---|---|
| Epitope Seq. | GGKKKYKL |
| Variant Seq. | GGKKKYqL |
| Mutations | K/Q |
| Epitope Location | K7Q |
| HXB2 Location | K30Q |
| Mutation Type | SNSF: subtype-specific non-susceptible form |
| Epitope Subtype | B |
| Method | Chromium-release assay |
| Note | A peptide containing this circulating Ugandan variant was not recognized by a CTL clone from a Clade B-infected patient. |
| Variant ID. | 1107 |
|---|---|
| Epitope Seq. | GGKKKYKL |
| Variant Seq. | GGKKKYrm |
| Mutations | K/R L/M |
| Epitope Location | K7R L8M |
| HXB2 Location | K30R L31M |
| Mutation Type | SNSF: subtype-specific non-susceptible form |
| Epitope Subtype | B |
| Method | Chromium-release assay |
| Note | A peptide containing this circulating Ugandan variant was not recognized by a CTL clone from a Clade B-infected patient. |
| Variant ID. | 1108 |
|---|---|
| Epitope Seq. | GGKKKYKL |
| Variant Seq. | GGsKKYKL |
| Mutations | K/S |
| Epitope Location | K3S |
| HXB2 Location | K26S |
| Mutation Type | SNSF: subtype-specific non-susceptible form |
| Epitope Subtype | B |
| Method | Chromium-release assay |
| Note | A peptide containing this circulating Ugandan variant was not recognized by a CTL clone from a Clade B-infected patient. |
| Variant ID. | 1109 |
|---|---|
| Epitope Seq. | GGKKKYKL |
| Variant Seq. | GGKKtYqL |
| Mutations | K/T K/Q |
| Epitope Location | K5T K7Q |
| HXB2 Location | K28T K30Q |
| Mutation Type | SNSF: subtype-specific non-susceptible form |
| Epitope Subtype | B |
| Method | Chromium-release assay |
| Note | A peptide containing this circulating Ugandan variant was not recognized by a CTL clone from a Clade B-infected patient. |
McAdam1998 S. McAdam, P. Kaleebu, P. Krausa, P. Goulder, N. French, B. Collin, T. Blanchard, J. Whitworth, A. McMichael, and F. Gotch. Cross-Clade Recognition of p55 by Cytotoxic T Lymphocytes in HIV-1 Infection. AIDS, 12:571-579, 1998. PubMed ID: 9583596. Show all entries for this paper.