HIV molecular immunology database


Search the Epitope Variant and Escape Mutation Database


Found 1 matching record:

Displaying record number 61615

HXB2 Location  Gag(71-79)   Gag Epitope Map
View variants at this location
Epitope GSEELRSLY   Epitope Alignment
Epitope Name Gag A01-GY9
Species (MHC/HLA human(A*01)

Variant Details

Showing all: 2 variant(s).

Variant ID.  4001
Epitope Seq.  GSEELRSLY
Variant Seq.  GSEELkSLY
Mutations R/K
Epitope Location R6K
HXB2 Location R76K
Mutation Type
Epitope Subtype B
Variant Subtype B
Method Other, Sequence
Note 30.8% of the sequences on d165 were this haplotype variant, GSEELkSLY, disappearing at later time points.

Variant ID.  4002
Epitope Seq.  GSEELRSLY
Variant Seq.  GSEELRSLf
Mutations Y/F
Epitope Location Y9F
HXB2 Location Y79F
Mutation Type
Epitope Subtype B
Variant Subtype B
Method Other, Sequence
Note 62.2% of the sequences on d1543, the last time point tested, were this haplotype variant, GSEELRSLf.


Henn2012 Matthew R. Henn, Christian L. Boutwell, Patrick Charlebois, Niall J. Lennon, Karen A. Power, Alexander R. Macalalad, Aaron M. Berlin, Christine M. Malboeuf, Elizabeth M. Ryan, Sante Gnerre, Michael C. Zody, Rachel L. Erlich, Lisa M. Green, Andrew Berical, Yaoyu Wang, Monica Casali, Hendrik Streeck, Allyson K. Bloom, Tim Dudek, Damien Tully, Ruchi Newman, Karen L. Axten, Adrianne D. Gladden, Laura Battis, Michael Kemper, Qiandong Zeng, Terrance P. Shea, Sharvari Gujja, Carmen Zedlack, Olivier Gasser, Christian Brander, Christoph Hess, Huldrych F. Günthard, Zabrina L. Brumme, Chanson J. Brumme, Suzane Bazner, Jenna Rychert, Jake P. Tinsley, Ken H. Mayer, Eric Rosenberg, Florencia Pereyra, Joshua Z. Levin, Sarah K. Young, Heiko Jessen, Marcus Altfeld, Bruce W. Birren, Bruce D. Walker, and Todd M. Allen. Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection. PLoS Pathog., 8(3):e1002529, 2012. PubMed ID: 22412369. Show all entries for this paper.

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