HIV molecular immunology database
Found 1 matching record:
| HXB2 Location | Gag(20-29) | Gag Epitope Map
View variants at this location |
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| Epitope |
RLRPGGKKHY
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Epitope Alignment | |||||||||||||
| Variants |
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| Species (MHC/HLA) | human(B*42:01) | ||||||||||||||
Showing all: 4 variant(s).
| Variant ID. | 2944 |
|---|---|
| Epitope Seq. | RLRPGGKKHY |
| Variant Seq. | kLRPGGKKHY |
| Mutations | R/K |
| Epitope Location | R1K |
| HXB2 Location | R20K |
| Mutation Type | IE: inferred escape |
| Epitope Subtype | C |
| Variant Subtype | C |
| Method | Sequence |
| Note | Subject CAP 274 carried this escape in 9/9 sequences 2.4 months post-infection (Mo.PI) and in 7/7 sequences 5.1 Mo.PI. |
| Variant ID. | 2945 |
|---|---|
| Epitope Seq. | RLRPGGKKHY |
| Variant Seq. | kLRPGGKKrY |
| Mutations | R/K H/R |
| Epitope Location | R1K H9R |
| HXB2 Location | R20K H28R |
| Mutation Type | IE: inferred escape |
| Epitope Subtype | C |
| Variant Subtype | C |
| Method | Sequence |
| Note | Subject CAP 274 carried this escape in 19/19 sequences 13.9 months post-infection. |
| Variant ID. | 2946 |
|---|---|
| Epitope Seq. | RLRPGGKKHY |
| Variant Seq. | RLRPGGKKrY |
| Mutations | H/R |
| Epitope Location | H9R |
| HXB2 Location | H28R |
| Mutation Type | IE: inferred escape |
| Epitope Subtype | C |
| Variant Subtype | C |
| Method | Sequence |
| Note | Subject CAP 239 carried this escape in 4/9 sequences 18.2 months post-infection. |
| Variant ID. | 2947 |
|---|---|
| Epitope Seq. | RLRPGGKKHY |
| Variant Seq. | RLRPGGKKqY |
| Mutations | H/Q |
| Epitope Location | H9Q |
| HXB2 Location | H28Q |
| Mutation Type | IE: inferred escape |
| Epitope Subtype | C |
| Variant Subtype | C |
| Method | Sequence |
| Note | Subject CAP 239 carried this escape in 5/9 sequences 18.2 months post-infection. |
Chopera2011 D. R. Chopera, M. Mlotshwa, Z. Woodman, K. Mlisana, D. de Assis Rosa, D. P. Martin, S. Abdool Karim, C. M. Gray, C. Williamson, and CAPRISA 002 Study Team. Virological and Immunological Factors Associated with HIV-1 Differential Disease Progression in HLA-B*58:01-Positive Individuals. J. Virol., 85(14):7070-7080, Jul 2011. PubMed ID: 21613398. Show all entries for this paper.