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Found 24 matching records:

Displaying record number 54629

HXB2 Location Gag(17-34) Gag Epitope Map
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Epitope

EKIRLRPGGKKKYRLKHL

Epitope Alignment

Variants

EKIRLRPGGKKhYmLKHL subtype-specific susceptible form

Epitope Name GAG-03

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1957`
Epitope Seq.	`EKIRLRPGGKKKYRLKHL`
Variant Seq.	`EKIRLRPGGKKhYmLKHL`
Mutations	K/H R/M
Epitope Location	K12H R14M
HXB2 Location	K28H R30M
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 2 amino acids (11.1%) and both were recognized by subtype-B-infected subjects.

References

Zhao2007 Shuguang Zhao, Song Zhai, Yan Zhuang, Shaoyang Wang, Dedong Huang, Whenzhen Kang, Xinhong Li, Xu G. Yu, Bruce D. Walker, Marcus A. Altfeld, and Yongtao Sun. Inter-Clade Cross-Reactivity of HIV-1-Specific T Cell Responses in Human Immunodeficiency Virus Type 1 Infection in China. Curr. HIV Res., 5(2):251-259, Mar 2007. PubMed ID: 17346138. Show all entries for this paper.

Displaying record number 54628

HXB2 Location Gag(126-143) Gag Epitope Map
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Epitope

SQVSQNYPIVQNLQGQMV

Epitope Alignment

Variants

-kVSQNYPIVQNLQGQMV subtype-specific susceptible form

Epitope Name GAG-18

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`2269`
Epitope Seq.	`SQVSQNYPIVQNLQGQMV`
Variant Seq.	`-kVSQNYPIVQNLQGQMV`
Mutations	S/- Q/K
Epitope Location	S1- Q2K
HXB2 Location	S126- Q127K
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 2 amino acids (11.1%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54631

HXB2 Location Gag(163-179) Gag Epitope Map
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Epitope

AFSPEVIPMFSALSEGA

Epitope Alignment

Variants

AFSPEVIPMFtALSEGA subtype-specific susceptible form

Epitope Name GAG-23

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1956`
Epitope Seq.	`AFSPEVIPMFSALSEGA`
Variant Seq.	`AFSPEVIPMFtALSEGA`
Mutations	S/T
Epitope Location	S11T
HXB2 Location	S173T
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 1 amino acid (5.9%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54630

HXB2 Location Gag(170-187) Gag Epitope Map
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Epitope

PMFSALSEGATPQDLNTM

Epitope Alignment

Variants

PMFtALSEGATPQDLNTM subtype-specific susceptible form

Epitope Name GAG-24

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1958`
Epitope Seq.	`PMFSALSEGATPQDLNTM`
Variant Seq.	`PMFtALSEGATPQDLNTM`
Mutations	S/T
Epitope Location	S4T
HXB2 Location	S173T
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 1 amino acid (5.6%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54632

HXB2 Location Gag(193-210) Gag Epitope Map
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Epitope

GHQAAMQMLKETINEEAA

Epitope Alignment

Variants

GHQAAMQMLKdTINEEAA subtype-specific susceptible form

Epitope Name GAG-27

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1959`
Epitope Seq.	`GHQAAMQMLKETINEEAA`
Variant Seq.	`GHQAAMQMLKdTINEEAA`
Mutations	E/D
Epitope Location	E11D
HXB2 Location	E203D
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 1 amino acid (5.6%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54633

HXB2 Location Gag(201-218) Gag Epitope Map
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Epitope

LKETINEEAAEWDRLHPV

Epitope Alignment

Variants

LKdTINEEAAEWDRLHPV subtype-specific susceptible form

Epitope Name GAG-28

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1960`
Epitope Seq.	`LKETINEEAAEWDRLHPV`
Variant Seq.	`LKdTINEEAAEWDRLHPV`
Mutations	E/D
Epitope Location	E3D
HXB2 Location	E203D
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 1 amino acid (5.6%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54634

HXB2 Location Gag(288-305) Gag Epitope Map
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Epitope

GPKEPFRDYVDRFYKTLR

Epitope Alignment

Variants

GPKEPFRDYVDRFfKTLR subtype-specific susceptible form

Epitope Name GAG-40

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1961`
Epitope Seq.	`GPKEPFRDYVDRFYKTLR`
Variant Seq.	`GPKEPFRDYVDRFfKTLR`
Mutations	Y/F
Epitope Location	Y14F
HXB2 Location	Y301F
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 1 amino acid (5.6%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54635

HXB2 Location Gag(296-313) Gag Epitope Map
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Epitope

YVDRFYKTLRAEQASQEV

Epitope Alignment

Variants

YVDRFfKTLRAEQAtQdV subtype-specific susceptible form

Epitope Name GAG-41

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1962`
Epitope Seq.	`YVDRFYKTLRAEQASQEV`
Variant Seq.	`YVDRFfKTLRAEQAtQdV`
Mutations	S/T E/D Y/F
Epitope Location	S15T E17D Y6F
HXB2 Location	S310T E312D Y301F
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 3 amino acids (16.7%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54636

HXB2 Location Gag(304-321) Gag Epitope Map
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Epitope

LRAEQASQEVKNWMTETL

Epitope Alignment

Variants

LRAEQAtQdVKNWMTdTL subtype-specific susceptible form

Epitope Name GAG-42

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1963`
Epitope Seq.	`LRAEQASQEVKNWMTETL`
Variant Seq.	`LRAEQAtQdVKNWMTdTL`
Mutations	E/D S/T E/D
Epitope Location	E16D S7T E9D
HXB2 Location	E319D S310T E312D
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 3 amino acids (16.7%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54637

HXB2 Location Gag(340-358) Gag Epitope Map
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Epitope

AATLEEMMTACQGVGGPSH

Epitope Alignment

Variants

gAsLEEMMTACQGVGGPSH subtype-specific susceptible form

Epitope Name GAG-47

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1964`
Epitope Seq.	`AATLEEMMTACQGVGGPSH`
Variant Seq.	`gAsLEEMMTACQGVGGPSH`
Mutations	A/G T/S
Epitope Location	A1G T3S
HXB2 Location	A340G T342S
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 2 amino acids (10.5%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54639

HXB2 Location Gag(474-490) Gag Epitope Map
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Epitope

QKQEPIDKELYPLASLK

Epitope Alignment

Variants

pKQEPkDrE--PLtSLK subtype-specific susceptible form

Epitope Name GAG-65

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1965`
Epitope Seq.	`QKQEPIDKELYPLASLK`
Variant Seq.	`pKQEPkDrE--PLtSLK`
Mutations	Q/P L/- Y/- A/T I/K K/R
Epitope Location	Q1P L10- Y11- A14T I6K K8R
HXB2 Location	Q474P L483- Y484- A487T I479K K481R
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 6 amino acids (35.3%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54641

HXB2 Location Gag(481-498) Gag Epitope Map
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Epitope

KELYPLASLKSLFGNDPS

Epitope Alignment

Variants

rE--PL-SLKSLFGsDPl subtype-specific susceptible form

Epitope Name GAG-66

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1966`
Epitope Seq.	`KELYPLASLKSLFGNDPS`
Variant Seq.	`rE--PL-SLKSLFGsDPl`
Mutations	K/R N/S S/L L/- Y/- A/-
Epitope Location	K1R N15S S18L L3- Y4- A7-
HXB2 Location	K481R N495S S498L L483- Y484- A487-
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 5 amino acids (33.3%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54648

HXB2 Location Pol(528-545) Pol Epitope Map
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Epitope

QKIATESIVIWGKTPKFK

Epitope Alignment

Variants

QKIAmESIVIWGKTPKFr subtype-specific susceptible form

Epitope Name POL-72

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1967`
Epitope Seq.	`QKIATESIVIWGKTPKFK`
Variant Seq.	`QKIAmESIVIWGKTPKFr`
Mutations	K/R T/M
Epitope Location	K18R T5M
HXB2 Location	K545R T532M
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 2 amino acids (11.1%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54653

HXB2 Location Vif(64-81) Vif Epitope Map
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Epitope

LVITTYWGLHTGERDWHL

Epitope Alignment

Variants

LVIkTYWGLqTGERDWHL subtype-specific susceptible form

Epitope Name VIF-09

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`2270`
Epitope Seq.	`LVITTYWGLHTGERDWHL`
Variant Seq.	`LVIkTYWGLqTGERDWHL`
Mutations	H/Q T/K
Epitope Location	H10Q T4K
HXB2 Location	H73Q T67K
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 3 amino acids (16.7%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54654

HXB2 Location Vif(93-110) Vif Epitope Map
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Epitope

RYSTQVDPGLADQLIHLY

Epitope Alignment

Variants

RYSTQVePGLADQLIHmh subtype-specific susceptible form

Epitope Name VIF-13

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1969`
Epitope Seq.	`RYSTQVDPGLADQLIHLY`
Variant Seq.	`RYSTQVePGLADQLIHmh`
Mutations	L/M Y/H D/E
Epitope Location	L17M Y18H D7E
HXB2 Location	L109M Y110H D99E
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 3 amino acids (16.7%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54650

HXB2 Location gp160(30-46) gp160 Epitope Map
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Epitope

AAENLWVTVYYGVPVWK

Epitope Alignment

Variants

vggNLWVTVYYGVPVWK subtype-specific susceptible form

Epitope Name ENV-05

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1970`
Epitope Seq.	`AAENLWVTVYYGVPVWK`
Variant Seq.	`vggNLWVTVYYGVPVWK`
Mutations	A/V A/G E/G
Epitope Location	A1V A2G E3G
HXB2 Location	A30V A31G E32G
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 3 amino acids (17.6%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54651

HXB2 Location gp160(37-53) gp160 Epitope Map
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Epitope

TVYYGVPVWKEATTTLF

Epitope Alignment

Variants

TVYYGVPVWKEAkTTLF subtype-specific susceptible form

Epitope Name ENV-06

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1971`
Epitope Seq.	`TVYYGVPVWKEATTTLF`
Variant Seq.	`TVYYGVPVWKEAkTTLF`
Mutations	T/K
Epitope Location	T13K
HXB2 Location	T49K
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 1 amino acid (5.9%) and was recognized.

References

Displaying record number 54640

HXB2 Location Nef(65-82) Nef Epitope Map
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Epitope

EVGFPVRPQVPLRPMTYK

Epitope Alignment

Variants

EVGFPVRPQVPLRPMTfK subtype-specific susceptible form

Epitope Name NEF-10

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1972`
Epitope Seq.	`EVGFPVRPQVPLRPMTYK`
Variant Seq.	`EVGFPVRPQVPLRPMTfK`
Mutations	Y/F
Epitope Location	Y17F
HXB2 Location	Y81F
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 1 amino acid (5.6%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54642

HXB2 Location Nef(81-97) Nef Epitope Map
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Epitope

YKGALDLSHFLKEKGGL

Epitope Alignment

Variants

fKGAfDLSfFLKEKGGL subtype-specific susceptible form

Epitope Name NEF-12

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1973`
Epitope Seq.	`YKGALDLSHFLKEKGGL`
Variant Seq.	`fKGAfDLSfFLKEKGGL`
Mutations	Y/F L/F H/F
Epitope Location	Y1F L5F H9F
HXB2 Location	Y81F L85F H89F
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 3 amino acids (17.6%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54643

HXB2 Location Nef(88-105) Nef Epitope Map
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Epitope

SHFLKEKGGLEGLIYSQK

Epitope Alignment

Variants

SfFLKEKGGLEGLIYSkK subtype-specific susceptible form

Epitope Name NEF-13

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1974`
Epitope Seq.	`SHFLKEKGGLEGLIYSQK`
Variant Seq.	`SfFLKEKGGLEGLIYSkK`
Mutations	Q/K H/F
Epitope Location	Q17K H2F
HXB2 Location	Q104K H89F
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 2 amino acids (11.1%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54644

HXB2 Location Nef(96-113) Nef Epitope Map
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Epitope

GLEGLIYSQKRQDILDLW

Epitope Alignment

Variants

GLEGLIYSkKRQeILDLW subtype-specific susceptible form

Epitope Name NEF-14

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1975`
Epitope Seq.	`GLEGLIYSQKRQDILDLW`
Variant Seq.	`GLEGLIYSkKRQeILDLW`
Mutations	D/E Q/K
Epitope Location	D13E Q9K
HXB2 Location	D108E Q104K
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 2 amino acids (11.1%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54645

HXB2 Location Nef(104-121) Nef Epitope Map
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Epitope

QKRQDILDLWVYHTQGYF

Epitope Alignment

Variants

kKRQeILDLWVYHTQGYF subtype-specific susceptible form

Epitope Name NEF-15

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1976`
Epitope Seq.	`QKRQDILDLWVYHTQGYF`
Variant Seq.	`kKRQeILDLWVYHTQGYF`
Mutations	Q/K D/E
Epitope Location	Q1K D5E
HXB2 Location	Q104K D108E
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 2 amino acids (11.1%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54646

HXB2 Location Nef(118-135) Nef Epitope Map
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Epitope

QGYFPDWQNYTPGPGRF

Epitope Alignment

Variants

QGYFPDWQNYTPGPvRy subtype-specific susceptible form

Epitope Name NEF-17

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1977`
Epitope Seq.	`QGYFPDWQNYTPGPGRF`
Variant Seq.	`QGYFPDWQNYTPGPvRy`
Mutations	G/V F/Y
Epitope Location	G15V F17Y
HXB2 Location	G132V F134Y
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 2 amino acids (11.1%) and both were recognized by subtype-B-infected subjects.

References

Displaying record number 54647

HXB2 Location Nef(125-143) Nef Epitope Map
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Epitope

QNYTPGPGRFPLTFGWCF

Epitope Alignment

Variants

QNYTPGPGvRyPLTFGWCF subtype-specific susceptible form

Epitope Name NEF-18

Species (MHC/HLA) human

Variant Details

Showing all: 1 variant(s).

Variant ID.	`1978`
Epitope Seq.	`QNYTPGPGRFPLTFGWCF`
Variant Seq.	`QNYTPGPGvRyPLTFGWCF`
Mutations	F/R P/Y L/P T/L F/T G/F W/G C/W F/C R/V
Epitope Location	F10R P11Y L12P T13L F14T G15F W16G C17W F18C R9V
HXB2 Location	F134R P135Y L136P T137L F138T G139F W140G C141W F142C R133V
Mutation Type	SSF: subtype-specific susceptible form
Epitope Subtype	B
Variant Subtype	C
Method	CD8 T-cell Elispot - IFNy, Sequence
Note	This Clade C consensus synthetic peptide variant from an immunodominant region, differs from the immunodominant Clade B consensus at 2 amino acids (10.5%) and both were recognized by subtype-B-infected subjects.