Found 19 matching records:
HXB2 Location | Gag(20-28) | Gag Epitope Map
View variants at this location |
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Epitope |
RLRPGGKKK
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(A*03:01) |
Showing all: 1 variant(s).
Variant ID. | 2835 |
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Epitope Seq. | {KWEKI}RLRPGGKKK |
Variant Seq. | {rWEKI}RLRPGGKKK |
Mutations | K/R |
Epitope Location | K-5R |
HXB2 Location | K15R |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 3/16 and 1/11 sequences of peptide {KWEKI}RLRPGGKKK varied at 639 and 821 DFOSx to {rWEKI}RLRPGGKKK. Position 15 in the peptide is marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Gag(147-155) | Gag Epitope Map
View variants at this location |
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Epitope |
ISPRTLNAW
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human(B*57:01) |
Showing all: 2 variant(s).
Variant ID. | 2799 |
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Epitope Seq. | ISPRTLNAW |
Variant Seq. | lSPRTLNAW |
Mutations | I/L |
Epitope Location | I1L |
HXB2 Location | I147L |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/3 or 2/3 sequences of epitope ISPRTLNAW varied at 350 DFOSx to lSPRTLNAW and xSPRTLNAW, where X = l or s. Position 15 in the epitope is marked as being under selection to vary. |
Variant ID. | 2800 |
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Epitope Seq. | ISPRTLNAW |
Variant Seq. | xSPRTLNAW |
Mutations | I/X |
Epitope Location | I1X |
HXB2 Location | I147X |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/3 or 2/3 sequences of epitope ISPRTLNAW varied at 350 DFOSx to xSPRTLNAW, since x = l or s, and another variant, lSPRTLNAW is found. Position 15 in the epitope is marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Gag(240-249) | Gag Epitope Map
View variants at this location |
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Epitope |
TSTLQEQVGW
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Epitope Alignment | ||||||||||
Variants |
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Species (MHC/HLA) | human(B*57:01) |
Showing all: 3 variant(s).
Variant ID. | 2806 |
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Epitope Seq. | TSTLQEQVGW |
Variant Seq. | TSTLQEQiGW |
Mutations | V/I |
Epitope Location | V8I |
HXB2 Location | V247I |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 8/9 sequences of epitope TSTLQEQVGW varied at 159 DFOSx to ITSTLQEQiGW. Position 115 in the peptide is marked as being under selection to vary. |
Variant ID. | 2808 |
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Epitope Seq. | TSTLQEQVGW |
Variant Seq. | TSTLQEQVeW |
Mutations | G/E |
Epitope Location | G9E |
HXB2 Location | G248E |
Mutation Type | OV: observed variant |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/9 sequences of epitope TSTLQEQVGW varied at 159 DFOSx to TSTLQEQVeW. Position 116 in the peptide is marked as being under selection to vary. |
Variant ID. | 2809 |
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Epitope Seq. | TSTLQEQVGW |
Variant Seq. | TSnLQEQiaW |
Mutations | T/N V/I G/A |
Epitope Location | T3N V8I G9A |
HXB2 Location | T242N V247I G248A |
Mutation Type | OV: observed variant |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 8/8 sequences of epitope TSTLQEQVGW varied at 592 DFOSx to TSnLQEQiaW. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Gag(240-249) | Gag Epitope Map
View variants at this location |
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Epitope |
TSTLQEQIGW
|
Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human(B*57:01) |
Showing all: 2 variant(s).
Variant ID. | 2796 |
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Epitope Seq. | TSTLQEQIGW |
Variant Seq. | TSnLQEQIGW |
Mutations | T/N |
Epitope Location | T3N |
HXB2 Location | T242N |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/9, 2/9, 1/2 and 3/3 sequences of epitope TSTLQEQIGW varied at 45, 85, 154 and 350 DFOSx to TSnLQEQIGW. Position 110 in the epitope is marked as being under selection to vary. |
Variant ID. | 2798 |
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Epitope Seq. | TSTLQEQIGW |
Variant Seq. | TSTLQEQIeW |
Mutations | G/E |
Epitope Location | G9E |
HXB2 Location | G248E |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/2, 6/9 and 1/2 sequences of epitope TSTLQEQIGW varied at 45, 85 and 154 DFOSx to TSTLQEQIeW. Position 116 in the epitope is marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Pol(90-98) | Pol Epitope Map
View variants at this location |
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Epitope |
EEMNLPGRW
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(B*44:02) |
Showing all: 1 variant(s).
Variant ID. | 2828 |
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Epitope Seq. | EEMNLPGRW |
Variant Seq. | EdMNLPGRW |
Mutations | E/D |
Epitope Location | E2D |
HXB2 Location | E91D |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | Epitope EEMNLPGRW varied from 96 DFOSx to EdMNLPGRW. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Pol(640-648) | Pol Epitope Map
View variants at this location |
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Epitope |
ALQDSGLEV
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Epitope Alignment | ||||||||||||||||
Variants |
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Species (MHC/HLA) | human(A*02:01) |
Showing all: 5 variant(s).
Variant ID. | 2843 |
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Epitope Seq. | ALQDSGLEV |
Variant Seq. | ALQDSGvEV |
Mutations | L/V |
Epitope Location | L7V |
HXB2 Location | L646V |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/27 sequences of epitope ALQDSGLEV varied at 552 DFOSx to ALQDSGvEV. Position 491 in the epitope is marked as being under selection to vary. |
Variant ID. | 2844 |
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Epitope Seq. | ALQDSGLEV |
Variant Seq. | ALQDSGsEV |
Mutations | L/S |
Epitope Location | L7S |
HXB2 Location | L646S |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 2/27 and 1/15 sequences of epitope ALQDSGLEV varied at 552 and 718 DFOSx to ALQDSGsEV. Position 491 in the epitope is marked as being under selection to vary. |
Variant ID. | 2845 |
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Epitope Seq. | ALQDSGLEV{NV} |
Variant Seq. | ALQDSGLEV{Ni} |
Mutations | V/I |
Epitope Location | V+2I |
HXB2 Location | V650I |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 12/27 and 12/15 sequences of epitope ALQDSGLEV{NV} varied at 552 and 718 DFOSx to ALQDSGLEV{Ni}. Position 495 in the epitope is marked as being under selection to vary. |
Variant ID. | 2846 |
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Epitope Seq. | ALQDSGLEV{NV} |
Variant Seq. | ALQDSGLEV{Nx} |
Mutations | V/I |
Epitope Location | V+2I |
HXB2 Location | V650I |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/27 (or possibly 13/27) sequences of epitope ALQDSGLEV{NV} varied at 552 DFOSx to ALQDSGLEV{Nx} (as well as possibly 1/15 at 718 DFOSx). Position 495 in the epitope is marked as being under selection to vary. |
Variant ID. | 2847 |
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Epitope Seq. | ALQDSGLEV{NV} |
Variant Seq. | ALQDSGxEV{Nx} |
Mutations | V/X L/X |
Epitope Location | V+2X L7X |
HXB2 Location | V650X L646X |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 2/15 sequences of epitope ALQDSGLEV{NV} varied at 718 DFOSx to ALQDSGxEV{Nx}. Positions 491 and 495 in the epitope are marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Vif(113-130) | Vif Epitope Map
View variants at this location |
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Epitope |
DCFSESAIRGAILGHIVS
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human |
Showing all: 2 variant(s).
Variant ID. | 2852 |
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Epitope Seq. | DCFSESAIRGAILGHIVS |
Variant Seq. | DCFSESAIRrAILGHIVS |
Mutations | G/R |
Epitope Location | G10R |
HXB2 Location | G122R |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | Peptide DCFSESAIRGAILGHIVS varied at 101 DFOSx to DCFSESAIRrAILGHIVS. Position 122 in the peptide is marked as being under selection to vary. |
Variant ID. | 2853 |
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Epitope Seq. | DCFSESAIRGAILGHIVS |
Variant Seq. | DCFSdSAIRrAILGHIVS |
Mutations | G/R E/D |
Epitope Location | G10R E5D |
HXB2 Location | G122R E117D |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | Peptide DCFSESAIRGAILGHIVS varied from 101 DFOSx onwards to DCFSdSAIRrAILGHIVS. Positions 117 and 122 in the peptide are marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Vif(119-127) | Vif Epitope Map
View variants at this location |
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Epitope |
AIRKAILGR
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human(A*31:01) |
Showing all: 2 variant(s).
Variant ID. | 2790 |
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Epitope Seq. | AIRKAILGR |
Variant Seq. | AIRtAILGR |
Mutations | K/T |
Epitope Location | K4T |
HXB2 Location | K122T |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 4/7 sequences of epitope AIRKAlLGR varied at 181 DFOSx to AIRtAlLGR. Position 122 is marked as being selected to vary. |
Variant ID. | 2791 |
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Epitope Seq. | AIRKAILGR |
Variant Seq. | AIReAILGR |
Mutations | K/E |
Epitope Location | K4E |
HXB2 Location | K122E |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 9/12 sequences of epitope AIRKAlLGR varied at 412 DFOSx to AIReAlLGR. Position 122 is marked as being selected to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Rev(51-60) | Rev Epitope Map
View variants at this location |
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Epitope |
QIRSISERIL
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(A*31:01) |
Showing all: 1 variant(s).
Variant ID. | 2793 |
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Epitope Seq. | QIRSISERIL |
Variant Seq. | QIRSISERIf |
Mutations | L/F |
Epitope Location | L10F |
HXB2 Location | L60F |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/9, 1/7 and 1/12 sequences of epitope QIRSISERIL varied at 111, 181 and 412 DFOSx to QIRSISERIf. Position 60 is marked as being selected to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Env(6-20) | Env Epitope Map
View variants at this location |
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Epitope |
NYQHLWRGGIMLLWRGIM
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human |
Showing all: 2 variant(s).
Variant ID. | 2855 |
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Epitope Seq. | NYQHLWRGGIMLLWRGIM |
Variant Seq. | NYQHLWRGGIsLLWRGIM |
Mutations | M/S |
Epitope Location | M11S |
HXB2 Location | M16S |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | Peptide NYQHLWRGGIMLLWRGIM varied at 228 DFOSx to NYQHLWRGGIsLLWRGIM. Position 16 in the peptide is marked as being under selection to vary. |
Variant ID. | 2856 |
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Epitope Seq. | NYQHLWRGGIMLLWRGIM |
Variant Seq. | NYQHwWRGGIMLLWRGIM |
Mutations | L/W |
Epitope Location | L5W |
HXB2 Location | L10W |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | Peptide NYQHLWRGGIMLLWRGIM varied at 368 DFOSx to NYQHwWRGGIMLLWRGIM. Position 10 in the peptide is marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Env(334-351) | Env Epitope Map
View variants at this location |
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Epitope |
SGEDWNKTLSHVVDKLRE
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Epitope Alignment | |||||||
Variants |
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Species (MHC/HLA) | human |
Showing all: 2 variant(s).
Variant ID. | 2820 |
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Epitope Seq. | SGEDWNKTLSHVVDKLRE |
Variant Seq. | SGEDWNKTLSyVVDKLRE |
Mutations | H/Y |
Epitope Location | H11Y |
HXB2 Location | H344Y |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/5 and 4/5 sequences of peptide SGEDWNKTLSHVVDKLRE varied at 102 and 592 DFOSx to SGEDWNKTLSyVVDKLRE. Position 344 in the peptide is marked as being under selection to vary. |
Variant ID. | 2821 |
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Epitope Seq. | SGEDWNKTLSHVVDKLRE |
Variant Seq. | SGEDWNKTLSHVVnKLRE |
Mutations | D/N |
Epitope Location | D14N |
HXB2 Location | D347N |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 6/12 sequences of peptide SGEDWNKTLSHVVDKLRE varied at 159 DFOSx to SGEDWNKTLSHVVnKLRE. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Env(352-361) | Env Epitope Map
View variants at this location |
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Epitope |
QFRNKTIVF
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Epitope Alignment | ||||||||||
Variants |
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Species (MHC/HLA) | human(C*04:01) |
Showing all: 3 variant(s).
Variant ID. | 2813 |
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Epitope Seq. | QFRNKTIVF |
Variant Seq. | QFkNKTIVF |
Mutations | R/K |
Epitope Location | R3K |
HXB2 Location | R354K |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 11/15, 12/12, 4/5, 10/12 and 3/5 sequences of epitope QFRNKTIVF varied at 14, 32, 102, 159 and 592 DFOSx to QFkNKTIVF. Position 354 in the epitope is marked as being under selection to vary. |
Variant ID. | 2815 |
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Epitope Seq. | QFRNKTIVF |
Variant Seq. | QFRNKaIVF |
Mutations | T/A |
Epitope Location | T6A |
HXB2 Location | T357A |
Mutation Type | OV: observed variant |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/15 sequences of epitope QFRNKTIVF varied at 14 DFOSx to QFRNKaIVF. |
Variant ID. | 2817 |
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Epitope Seq. | QFRNKTIVF |
Variant Seq. | QFnNKTIVF |
Mutations | R/N |
Epitope Location | R3N |
HXB2 Location | R354N |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/5 and 2/12 sequences of epitope QFRNKTIVF varied at 102 and 159 DFOSx to QFnNKTIVF. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Env(584-592) | Env Epitope Map
View variants at this location |
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Epitope |
ERYLRDQQL
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Epitope Alignment | |||||||||||||
Variants |
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Species (MHC/HLA) | human(B*14:02) |
Showing all: 4 variant(s).
Variant ID. | 2801 |
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Epitope Seq. | ERYLRDQQL |
Variant Seq. | ERYLgDQQL |
Mutations | R/G |
Epitope Location | R5G |
HXB2 Location | R588G |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/7, 2/9 and 1/9 sequences of epitope ERYLRDQQL varied at 9, 45 and 85 DFOSx to ERYLgDQQL. Position 588 in the epitope is marked as being under selection to vary. |
Variant ID. | 2802 |
---|---|
Epitope Seq. | ERYLRDQQL |
Variant Seq. | ERYLkDQQL |
Mutations | R/K |
Epitope Location | R5K |
HXB2 Location | R588K |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/9 and 3/9 sequences of epitope ERYLRDQQL varied at 45 and 85 DFOSx to ERYLkDQQL. |
Variant ID. | 2803 |
---|---|
Epitope Seq. | ERYLRDQQL |
Variant Seq. | ERYLsDQQL |
Mutations | R/S |
Epitope Location | R5S |
HXB2 Location | R588S |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 2/9, 1/9 and 2/2 sequences of epitope ERYLRDQQL varied at 45, 85 and 350 DFOSx to ERYLsDQQL. |
Variant ID. | 2805 |
---|---|
Epitope Seq. | ERYLRDQQL |
Variant Seq. | ERhLRDQQL |
Mutations | Y/H |
Epitope Location | Y3H |
HXB2 Location | Y586H |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/7, 3/9 and 3/9 sequences of epitope ERYLRDQQL varied at 9, 45 and 85 DFOSx to ERhLRDQQL. Position 586 in the epitope is marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Env(605-614) | Env Epitope Map
View variants at this location |
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Epitope |
TTTVPWNVSW
|
Epitope Alignment | |||||||
Variants |
|
||||||||
Species (MHC/HLA) | human(B*57:01) |
Showing all: 2 variant(s).
Variant ID. | 2810 |
---|---|
Epitope Seq. | TTTVPWNVSW |
Variant Seq. | TTTVPWNtSW |
Mutations | V/T |
Epitope Location | V8T |
HXB2 Location | V612T |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 3/5 sequences of epitope TTTVPWNVSW varied at 592 DFOSx to TTTVPWNtSW. Position 612 in the epitope is marked as being under selection to vary. |
Variant ID. | 2812 |
---|---|
Epitope Seq. | TTTVPWNVSW |
Variant Seq. | TTTVPWNsSW |
Mutations | V/S |
Epitope Location | V8S |
HXB2 Location | V612S |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 3/5 sequences of epitope TTTVPWNVSW varied at 592 DFOSx to TTTVPWNsSW. Position 612 in the epitope is marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Env(830-847) | Env Epitope Map
View variants at this location |
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Epitope |
IEVVQRACRAILHIPRRI
|
Epitope Alignment | ||||||||||||||||
Variants |
|
|||||||||||||||||
Species (MHC/HLA) | human |
Showing all: 5 variant(s).
Variant ID. | 2784 |
---|---|
Epitope Seq. | IEVVQRACRAILHIPRRI |
Variant Seq. | IEVVQRACRAIfHIPRRI |
Mutations | L/F |
Epitope Location | L12F |
HXB2 Location | L841F |
Mutation Type | OV: observed variant |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/9 sequences of peptide IEVVQRACRAILHIPRRI varied at 111 DFOSx to IEVVQRACRAIfHIPRRI. |
Variant ID. | 2785 |
---|---|
Epitope Seq. | IEVVQRACRAILHIPRRI |
Variant Seq. | IEiVQRACRAILHIPRRI |
Mutations | V/I |
Epitope Location | V3I |
HXB2 Location | V832I |
Mutation Type | OV: observed variant |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/9 sequences of peptide IEVVQRACRAILHIPRRI varied at 111 DFOSx to IEiVQRACRAILHIPRRI. |
Variant ID. | 2786 |
---|---|
Epitope Seq. | IEVVQRACRAILHIPRRI |
Variant Seq. | IEVVQRACRAILHIPRkI |
Mutations | R/K |
Epitope Location | R17K |
HXB2 Location | R846K |
Mutation Type | OV: observed variant |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/7 sequences of peptide IEVVQRACRAILHIPRRI varied at 181 DFOSx to IEVVQRACRAILHIPRkI. |
Variant ID. | 2787 |
---|---|
Epitope Seq. | IEVVQRACRAILHIPRRI |
Variant Seq. | IEVVQRACRAIcHIPRRI |
Mutations | L/C |
Epitope Location | L12C |
HXB2 Location | L841C |
Mutation Type | OV: observed variant |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/12 sequences of peptide IEVVQRACRAILHIPRRI varied at 412 DFOSx to IEVVQRACRAIcHIPRRI. Position 841 in the peptide is marked as being under selection to vary. |
Variant ID. | 2788 |
---|---|
Epitope Seq. | IEVVQRACRAILHIPRRI |
Variant Seq. | IEVVQRACRAIrHIPRRI |
Mutations | L/R |
Epitope Location | L12R |
HXB2 Location | L841R |
Mutation Type | OV: observed variant |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 1/12 sequences of peptide IEVVQRACRAILHIPRRI varied at 412 DFOSx to IEVVQRACRAIrHIPRRI. Position 841 in the peptide is marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Nef(73-82) | Nef Epitope Map
View variants at this location |
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Epitope |
QVPLRPMTYK
|
Epitope Alignment | |||||||
Variants |
|
||||||||
Species (MHC/HLA) | human(A*03:01) |
Showing all: 2 variant(s).
Variant ID. | 2837 |
---|---|
Epitope Seq. | QVPLRPMTYK{AA} |
Variant Seq. | QVPLRPMTYK{gA} |
Mutations | A/G |
Epitope Location | A+1G |
HXB2 Location | A83G |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 8/14 sequences of peptide QVPLRPMTYK{AA} varied at 639 DFOSx to QVPLRPMTYK{gA}. Position 83 in the peptide is marked as being under selection to vary. |
Variant ID. | 2839 |
---|---|
Epitope Seq. | QVPLRPMTYK{AA} |
Variant Seq. | QVPLRPMTfK{gA} |
Mutations | A/G Y/F |
Epitope Location | A+1G Y9F |
HXB2 Location | A83G Y81F |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 5/14 and 12/13 sequences of peptide QVPLRPMTYK{AA} varied at 639 and 821 DFOSx to QVPLRPMTfK{gA}. Positions 81 and 83 in the peptide are marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Nef(92-100) | Nef Epitope Map
View variants at this location |
||||
---|---|---|---|---|---|---|
Epitope |
KEKGGLEGL
|
Epitope Alignment | ||||
Variants |
|
|||||
Species (MHC/HLA) | human(B*40:01) |
Showing all: 1 variant(s).
Variant ID. | 2842 |
---|---|
Epitope Seq. | KEKGGLEGL |
Variant Seq. | KEKGGLEGm |
Mutations | L/M |
Epitope Location | L9M |
HXB2 Location | L100M |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | 16/21 and 8/10 sequences of epitope KEKGGLEGL varied at 552 and 718 DFOSx to KEKGGLEGm. Position 100 in the epitope is marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Nef(181-189) | Nef Epitope Map
View variants at this location |
|||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Epitope |
LEWRFDITL
|
Epitope Alignment | |||||||||||||
Variants |
|
||||||||||||||
Species (MHC/HLA) | human(A*02:01) |
Showing all: 4 variant(s).
Variant ID. | 2848 |
---|---|
Epitope Seq. | LEWRFDITL |
Variant Seq. | LaWRFDITL |
Mutations | E/A |
Epitope Location | E2A |
HXB2 Location | E182A |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | Epitope LEWRFDITL varied at 228 and 368 DFOSx to LaWRFDITL. Position 182 in the epitope is marked as being under selection to vary. |
Variant ID. | 2849 |
---|---|
Epitope Seq. | LEWRFDITL |
Variant Seq. | LqWRFDITL |
Mutations | E/Q |
Epitope Location | E2Q |
HXB2 Location | E182Q |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | Epitope LEWRFDITL varied at 228, 552 and 718 DFOSx to LqWRFDITL. Position 182 in the epitope is marked as being under selection to vary. |
Variant ID. | 2850 |
---|---|
Epitope Seq. | LEWRFDITL |
Variant Seq. | LpWRFDITL |
Mutations | E/P |
Epitope Location | E2P |
HXB2 Location | E182P |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | Epitope LEWRFDITL varied at 228 DFOSx to LpWRFDITL. Position 182 in the epitope is marked as being under selection to vary. |
Variant ID. | 2851 |
---|---|
Epitope Seq. | LEWRFDITL |
Variant Seq. | LvWRFDITL |
Mutations | E/P |
Epitope Location | E2P |
HXB2 Location | E182P |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | Epitope LEWRFDITL varied at 552 and 718 DFOSx to LvWRFDITL. Position 182 in the epitope is marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
HXB2 Location | Nef(185-202) | Nef Epitope Map
View variants at this location |
||||
---|---|---|---|---|---|---|
Epitope |
FDSRLAFHHIARELHPEY
|
Epitope Alignment | ||||
Variants |
|
|||||
Species (MHC/HLA) | human(A*02:01) |
Showing all: 1 variant(s).
Variant ID. | 2840 |
---|---|
Epitope Seq. | FDSRLAFHHIARELHPEY |
Variant Seq. | FDSlLAFHHIARELHPEY |
Mutations | R/L |
Epitope Location | R4L |
HXB2 Location | R188L |
Mutation Type | IE: inferred escape |
Epitope Subtype | B |
Variant Subtype | B |
Method | Sequence |
Note | Peptide FDSRLAFHHIARELHPEY varied from 183 DFOSx onwards to FDSlLAFHHIARELHPEY. Position 188 in the peptide is marked as being under selection to vary. |
Ferrari2011 Guido Ferrari, Bette Korber, Nilu Goonetilleke, Michael K. P. Liu, Emma L. Turnbull, Jesus F. Salazar-Gonzalez, Natalie Hawkins, Steve Self, Sydeaka Watson, Michael R. Betts, Cynthia Gay, Kara McGhee, Pierre Pellegrino, Ian Williams, Georgia D. Tomaras, Barton F. Haynes, Clive M. Gray, Persephone Borrow, Mario Roederer, Andrew J. McMichael, and Kent J. Weinhold. Relationship between Functional Profile of HIV-1 Specific CD8 T Cells and Epitope Variability with the Selection of Escape Mutants in Acute HIV-1 Infection. PLoS Pathog., 7(2):e1001273, 2011. PubMed ID: 21347345. Show all entries for this paper.
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