|
MGARASVLSGG
|
Gag(1-11)
|
human epitope
|
MGARASILRGGKLDK
|
Gag(1-15)
|
human epitope
|
MGARASvLsGGKLDa
|
Gag(1-15)
|
susceptible form
|
MGARASVLSGGKLDA
|
Gag(1-15)
|
human epitope
|
MGARASiLrGGKLDk
|
Gag(1-15)
|
susceptible form
|
MGARASVLSGGELDRWEKIR
|
Gag(1-20)
|
human epitope
|
MGARASVLSGGKLDAWEKIR
|
Gag(1-20)
|
human epitope
|
MGARASVLSGGKLDeWEKIR
|
Gag(1-20)
|
subtype-specific susceptible form
|
MGARASVLSGGKLDAWEsIR
|
Gag(1-20)
|
subtype-specific susceptible form
|
MGARASVLSGGKLDA-----
|
Gag(1-20)
|
non-susceptible form
|
MGARASVLSGGELDRWEKIR
|
Gag(1-20)
|
human epitope
|
ASVLSGGEL
|
Gag(5-13)
|
human epitope
|
ASVLSGGEL
|
Gag(5-13)
|
human epitope
|
ASILRGGKLDK
|
Gag(5-15)
|
human epitope
|
ASVLSGGELDRWEK
|
Gag(5-18)
|
human epitope
|
ASVLSGGELDRWEKI
|
Gag(5-19)
|
human epitope
|
ASVLSGGkLDaWEKI
|
Gag(5-19)
|
subtype-specific non-susceptible form
|
ASiLrGGkLDkWEKI
|
Gag(5-19)
|
subtype-specific non-susceptible form
|
ASVLSGGkLDkWEKI
|
Gag(5-19)
|
subtype-specific non-susceptible form
|
ASVLSGGELDkWEKI
|
Gag(5-19)
|
subtype-specific non-susceptible form
|
ASVLSGGKLDAWEKI
|
Gag(5-19)
|
human epitope
|
SVLSGGQLDR
|
Gag(6-15)
|
A11 human epitope
|
SILRGGKLDK
|
Gag(6-15)
|
A*74:01 human epitope
|
SILRGeKLDK
|
Gag(6-15)
|
observed variant
|
SvLRGGKLDK
|
Gag(6-15)
|
observed variant
|
SILRGGnLDK
|
Gag(6-15)
|
literature escape
|
SVLSGGELDKWEK
|
Gag(6-18)
|
A*11:01 human epitope
|
SVLSGGELDRWEKI
|
Gag(6-19)
|
human epitope
|
LSGGELDRWEK
|
Gag(8-18)
|
macaque epitope
|
LSGGkLDaWEK
|
Gag(8-18)
|
subtype-specific non-susceptible form
|
SGGELDKWEK
|
Gag(9-18)
|
A*11:01 human epitope
|
SGGELDRWEKIRLRP
|
Gag(9-23)
|
B44, B60 human epitope
|
SGGKLDAWEKIRLRP
|
Gag(9-23)
|
human epitope
|
SGGELDRWEKIRLRP
|
Gag(9-23)
|
human epitope
|
SGGKLDAWEKIRLRP
|
Gag(9-23)
|
human epitope
|
SGGKLDAWEKIRLRPGGK
|
Gag(9-26)
|
human epitope
|
GGKLDTWEKIRLRPG
|
Gag(10-24)
|
human epitope
|
GGeLDrWEKIRLRPG
|
Gag(10-24)
|
susceptible form
|
GGKLDkWEKIRLRPG
|
Gag(10-24)
|
susceptible form
|
GGELDRWEKIRLRPG
|
Gag(10-24)
|
human epitope
|
GGkLDtWEKIRLRPG
|
Gag(10-24)
|
susceptible form
|
GGkLDkWEKIRLRPG
|
Gag(10-24)
|
susceptible form
|
GGKLDKWEKIRLRPG
|
Gag(10-24)
|
human epitope
|
GGeLDrWEKIRLRPG
|
Gag(10-24)
|
susceptible form
|
GGKLDtWEKIRLRPG
|
Gag(10-24)
|
susceptible form
|
GELDRWEKI
|
Gag(11-19)
|
B*40 human epitope
|
GELDRWEKI
|
Gag(11-19)
|
B*40 human epitope
|
GELDRWkKI
|
Gag(11-19)
|
diminished response; literature escape
|
GELDRWEKI
|
Gag(11-19)
|
B*40 human epitope
|
GELDRWEKI
|
Gag(11-19)
|
B40 human epitope
|
GELDRWEKI
|
Gag(11-19)
|
B*40:02 human epitope
|
GELDRWEKI
|
Gag(11-19)
|
B*40:02 human epitope
|
GELDRWEKI
|
Gag(11-19)
|
B*49:01 human epitope
|
GELDRWEKI
|
Gag(11-19)
|
human epitope
|
GELDRWEKI
|
Gag(11-19)
|
human epitope
|
GQLDRWEKI
|
Gag(11-19)
|
human epitope
|
GeLDRWEKI
|
Gag(11-19)
|
observed variant
|
GKLDSWEKIRLR
|
Gag(11-22)
|
human epitope
|
GKLDaWEKIRLR
|
Gag(11-22)
|
subtype-specific susceptible form
|
GKLDAWEKIRLR
|
Gag(11-22)
|
human epitope
|
GELDRWEKIRLRPGGKKKYK
|
Gag(11-30)
|
B62 human epitope
|
GQLDRWEKIRLRPGGKKKYR
|
Gag(11-30)
|
human epitope
|
GeLDRWEKIRLRPGGnKrYR
|
Gag(11-30)
|
observed variant
|
GkLDqWEKIRLRPGGnKrYk
|
Gag(11-30)
|
observed variant
|
GQLDRWEKIRLRPGGnKrYR
|
Gag(11-30)
|
non-susceptible form; susceptible form
|
GkLDtWEKIRLRPGGnKrYk
|
Gag(11-30)
|
observed variant
|
eQLDRWErIRLRPGGrKKYR
|
Gag(11-30)
|
observed variant
|
GeLDRWEKIRLRPGGrKKYR
|
Gag(11-30)
|
observed variant
|
eQLDRWErIRLRPGGrrKYR
|
Gag(11-30)
|
observed variant
|
eQLDRWErIRLRPGerKKYR
|
Gag(11-30)
|
observed variant
|
GQLDkWEKIqLRPGGKKrYR
|
Gag(11-30)
|
observed variant
|
GQLDRWEKIqLRPGGKKrYR
|
Gag(11-30)
|
diminished response; non-susceptible form
|
GkLDkWEKIRLRPGGKKrYk
|
Gag(11-30)
|
observed variant
|
GeLDRWEKIRLRPGGKKrYR
|
Gag(11-30)
|
observed variant
|
GQLDRWEKIRLRPGGKKrYR
|
Gag(11-30)
|
diminished response; non-susceptible form
|
GeLDRWEKIRsRPGGnKrYR
|
Gag(11-30)
|
observed variant
|
GeLDRWEKIRLRPmGKKKYR
|
Gag(11-30)
|
observed variant
|
GQLDRWEKIRLRPmGKKKYR
|
Gag(11-30)
|
diminished response; non-susceptible form
|
GeLDRWEKIRLRPGGKKKYR
|
Gag(11-30)
|
observed variant
|
GeLDRWEKIRLRPGGKKqYR
|
Gag(11-30)
|
observed variant
|
GQLDRWEKIRLRPGGKKqYR
|
Gag(11-30)
|
diminished response; non-susceptible form
|
GQLDRWEKIRLRPGGnKKYR
|
Gag(11-30)
|
non-susceptible form
|
GELDRWEKIRLRPGGKKKYK
|
Gag(11-30)
|
human epitope
|
GKLDAWEKIRLRPGGKKKYRL
|
Gag(11-31)
|
human epitope
|
-----WEKIRLRPGG------
|
Gag(11-31)
|
non-susceptible form; susceptible form
|
GKLDAWEKIyLRPGGKKKYRL
|
Gag(11-31)
|
non-susceptible form; susceptible form
|
GKLDkWEKIRLRPGGKKKYRL
|
Gag(11-31)
|
non-susceptible form; susceptible form
|
---DrWEKIRLRPGGKKKYRL
|
Gag(11-31)
|
non-susceptible form; susceptible form
|
GKLDeWEKIRLRPGGKKKYRL
|
Gag(11-31)
|
non-susceptible form; susceptible form; subtype-specific susceptible form
|
GKLDeWEKIRLRPGGKKKYRL
|
Gag(11-31)
|
non-susceptible form; susceptible form; subtype-specific susceptible form
|
KLDKWEKIR
|
Gag(12-20)
|
A*74:01 human epitope
|
ELDRWEKIRL
|
Gag(12-21)
|
B63 human epitope
|
ELDRWEKIRL
|
Gag(12-21)
|
human epitope
|
KLDAWEKIRLR
|
Gag(12-22)
|
human epitope
|
LDRWEKIRLRPGGKK
|
Gag(13-27)
|
A3, B60 human epitope
|
LDRWEKIRLRPGGKK
|
Gag(13-27)
|
human epitope
|
LDAWEKIRLRPGGKK
|
Gag(13-27)
|
human epitope
|
DRWEKIRLRPG
|
Gag(14-24)
|
B*40 human epitope
|
DRWEKIRLRPG
|
Gag(14-24)
|
B*40 human epitope
|
DAWEKIRLRPG
|
Gag(14-24)
|
human epitope
|
RWEKIRLRP
|
Gag(15-23)
|
A*02:05 human epitope
|
WEKIRLRPGGKKKYK
|
Gag(16-30)
|
human epitope
|
WEKIRLRPGGKKKYK
|
Gag(16-30)
|
human epitope
|
EKIRLRPGGKK
|
Gag(17-27)
|
human epitope
|
EKIRLRPGGrK
|
Gag(17-27)
|
observed variant; susceptible form
|
EKIRLReGGrK
|
Gag(17-27)
|
observed variant
|
vKIRLRPGGKK
|
Gag(17-27)
|
observed variant
|
EKIRLRPaGKK
|
Gag(17-27)
|
observed variant
|
EKIRLRPGGsK
|
Gag(17-27)
|
observed variant
|
EKIRLRPGGKr
|
Gag(17-27)
|
observed variant
|
EKIRLRPGGKKKYKL
|
Gag(17-31)
|
B27, B7 human epitope
|
EKIRLRPGGKKKYRL
|
Gag(17-31)
|
human epitope
|
EKIRLRPGGKKKYRL
|
Gag(17-31)
|
human epitope
|
EKIRLRPGGKKKYRL
|
Gag(17-31)
|
human epitope
|
EKIRLRPGGKKKYKL
|
Gag(17-31)
|
human epitope
|
EKIRLRPGGKKKYqL
|
Gag(17-31)
|
non-susceptible form; susceptible form
|
EKIRLRPGGKKHYML
|
Gag(17-31)
|
human epitope
|
EKIRLRPGGKKKYRL
|
Gag(17-31)
|
human epitope
|
EKIRLRPGGKKKYRL
|
Gag(17-31)
|
human epitope
|
EKIRLRPGGKKKYKL
|
Gag(17-31)
|
human epitope
|
EKIRLRPGGKKHYMLKHL
|
Gag(17-34)
|
C*17 human epitope
|
EKIRLRGGKKKYRMKHL
|
Gag(17-34)
|
human epitope
|
EKIRLRPGGKKKYKLKHI
|
Gag(17-34)
|
human epitope
|
EKIRLRPGGKKHYMLKHL
|
Gag(17-34)
|
human epitope
|
EKIRLRPGGKKKYKLKHI
|
Gag(17-34)
|
human epitope
|
EKIRLRPGGKKKYRLKHL
|
Gag(17-34)
|
human epitope
|
EKIRLRPGGKKKYRLKHL
|
Gag(17-34)
|
human epitope
|
EKIRLRPGGKKhYmLKHL
|
Gag(17-34)
|
subtype-specific susceptible form
|
EKIRLRPGGKKKYKLKHI
|
Gag(17-34)
|
human epitope
|
EKIRLRPGGKKKYKLKHI
|
Gag(17-34)
|
human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03 human epitope
|
KIRLRPGGn
|
Gag(18-26)
|
susceptible form
|
KIRLRPeGK
|
Gag(18-26)
|
susceptible form
|
KIkLRPGGK
|
Gag(18-26)
|
susceptible form
|
KIqLRPGGK
|
Gag(18-26)
|
susceptible form
|
KIkLRPGGr
|
Gag(18-26)
|
susceptible form
|
KIRLRPGGK
|
Gag(18-26)
|
A*03 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03 human epitope
|
KIRLRPGGr
|
Gag(18-26)
|
literature escape; observed variant
|
KIRLRPGGK
|
Gag(18-26)
|
A*03 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03:01 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03:01 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03:01 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03:01 human epitope
|
KIRLRPGGr
|
Gag(18-26)
|
diminished HLA binding or increased off-rate
|
KIRLRPGGK
|
Gag(18-26)
|
A*03:01 human epitope
|
rIRLRPGGK
|
Gag(18-26)
|
diminished response; escape documented in this paper; non-susceptible form
|
KIRLRPGGK
|
Gag(18-26)
|
A*03:01 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03:01 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*03:01, A3, B27 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A11 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGr
|
Gag(18-26)
|
inferred escape
|
KIRLRPGGK{Kr}
|
Gag(18-26)
|
observed variant
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGq
|
Gag(18-26)
|
escape documented in this paper; processing
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGr
|
Gag(18-26)
|
escape documented in this paper
|
rIRLRPGGr
|
Gag(18-26)
|
escape documented in this paper
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A3 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*30 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
A*69 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
B*27 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
B7 human epitope
|
KIRLRPGGK{*t}
|
Gag(18-26)
|
escape documented in this paper; processing
|
KIRLRPGGK
|
Gag(18-26)
|
B*82 human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
human epitope
|
KIRLRPGGK
|
Gag(18-26)
|
human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
A*03 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
A*03, A*11, B*07, B*27 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
A*03:01 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
A11 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
A11 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
B*27 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
B*27 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
B27 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
B27 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
B27 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
B27 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
B27, B35 human epitope
|
KIRLRPGGKK
|
Gag(18-27)
|
B*27:05 human epitope
|
KIRLRPGGKKK
|
Gag(18-28)
|
human epitope
|
KIRLRPGGrKr
|
Gag(18-28)
|
observed variant; susceptible form
|
KIRLRPGGKKr
|
Gag(18-28)
|
observed variant; susceptible form
|
KIRLReGGrKK
|
Gag(18-28)
|
observed variant
|
KIRLRPaGKKK
|
Gag(18-28)
|
observed variant
|
KIRLRPGGsKK
|
Gag(18-28)
|
observed variant
|
KIRLRPGGKrK
|
Gag(18-28)
|
observed variant
|
KIRLRPGGKKKYKL
|
Gag(18-31)
|
A3 human epitope
|
KIRLRPGGKKKYKL
|
Gag(18-31)
|
B62 human epitope
|
KIRLRPGGKKKYKLK
|
Gag(18-32)
|
B*57 human epitope
|
KIRLRPGGKKKYKLK
|
Gag(18-32)
|
macaque epitope
|
KIRLRPGGKKKYKLKHIVWASRELE
|
Gag(18-42)
|
A3 human epitope
|
KIRLRPGGKKKYKLKHIVWASRELE
|
Gag(18-42)
|
A3 human epitope
|
KIRLRPGGKKKYKLKHIVWASRELE
|
Gag(18-42)
|
B62 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
A*03 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
A*30 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
A*68:02 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B*27 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B*27 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B*27 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B27 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B27 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B27 human epitope
|
IRLRPGGrK
|
Gag(19-27)
|
susceptible form
|
IRLRPGGKK
|
Gag(19-27)
|
B27 scid-hu mouse epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B27 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B27 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B27 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B27 human epitope
|
IRLRPGrKK
|
Gag(19-27)
|
observed variant
|
IRLRPrrKK
|
Gag(19-27)
|
observed variant
|
IRkRPGGKK
|
Gag(19-27)
|
observed variant
|
IRLgPGGsK
|
Gag(19-27)
|
inferred escape
|
IRLRPGGsK
|
Gag(19-27)
|
inferred escape
|
IRLRPGGKK
|
Gag(19-27)
|
B*27:02 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B*27:05 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B*27:05 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B*27:05 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B*27:05 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B*27:05 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B*27:05 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B*81 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
B*82 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
C*12 human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
human epitope
|
IRLRPGGKK
|
Gag(19-27)
|
human epitope
|
IRLRPGGKKK
|
Gag(19-28)
|
A11, A3, B62 human epitope
|
IRLRPGGKKK
|
Gag(19-28)
|
human epitope
|
IRLRPGGKKK
|
Gag(19-28)
|
human epitope
|
IRLRPGGKKKY
|
Gag(19-29)
|
human epitope
|
IRLRPGGrKrY
|
Gag(19-29)
|
non-susceptible form; observed variant
|
IRLRPGGKKrY
|
Gag(19-29)
|
observed variant; susceptible form
|
IRLReGGrKKY
|
Gag(19-29)
|
observed variant
|
IRLRPGGKKKr
|
Gag(19-29)
|
observed variant
|
IRLRPaGKKKY
|
Gag(19-29)
|
observed variant
|
IRLRPGGsKKY
|
Gag(19-29)
|
observed variant
|
IRLRPGGKrKY
|
Gag(19-29)
|
observed variant
|