Search T Helper/CD4+ T-Cell Epitope Database

Found 3 matching records:

Displaying record number 201010

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HXB2 Location	Gag(42-58) p17(42-58) DNA(913..963)	Gag Epitope Map
Author Location	p17(42-58 B consensus)
Epitope	ERFAVNPGLLETSEGCR	Epitope Alignment
Subtype	B
Species (MHC/HLA)	human(DRB1*01:01, DRB1*04:05, DRB1*11:01, DRB1*13:02)
Immunogen	HIV-1 infection
Country	United States
Experimental methods	CD4 T-cell Elispot - IFNγ
Keywords	supervised treatment interruptions (STI), immunodominance

Notes

• CD4 T-cell responses in 36 HIV-1 positive individuals in different disease stages were mapped by IFN-γ EliSpot using a panel of 410 B-consensus peptides spanning all HIV proteins. Virus specific CD4+ T-cell responses (median=7, range of magnitude=990) were detected in 30/36 patients.
• This peptide was recognized by 28% of the study group.
• Gag and Nef responses dominated the CD4+ T-cell EliSpot responses in the study. No correlation between plasma viremia and the frequency or magnitude of HIV-1-specific responses was observed.
• The peptides that were recognized by the most people were able to bind broadly to multiple HLA-DR molecules. This peptide showed high cross-reactive binding capacity and bound to 4/8 tested HLA-DR molecules.
• The most HIV-1 specific CD4+ T-cell responses were observed in acutely infected patients with treatment of primary infection who stopped after 1-3 treatments (acute STI), compared to patients continuing therapy. People with therapy during chronic infection had low responses; higher numbers of responses were seen among untreated people. 2/9 LTNPs responded to many peptides, comparable to acute STI.

References

Kaufmann2004 Daniel E. Kaufmann, Paul M. Bailey, John Sidney, Bradford Wagner, Philip J. Norris, Mary N. Johnston, Lisa A. Cosimi, Marylyn M. Addo, Mathias Lichterfeld, Marcus Altfeld, Nicole Frahm, Christian Brander, Alessandro Sette, Bruce D. Walker, and Eric S. Rosenberg. Comprehensive Analysis of Human Immunodeficiency Virus Type 1-Specific CD4 Responses Reveals Marked Immunodominance of gag and nef and the Presence of Broadly Recognized Peptides. J. Virol., 78(9):4463-4477, May 2004. PubMed ID: 15078927. Show all entries for this paper.

Displaying record number 201745

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HXB2 Location	Gag(42-58) p17(42-58) DNA(913..963)	Gag Epitope Map
Author Location	Gag
Epitope	ERFAVNPGLLETSEGCR	Epitope Alignment
Epitope Name	OLP-7
Species (MHC/HLA)	human(DRB1*13:02, DRB1*13:03, DRB1*15:01, DRB3*03:01)
Immunogen	HIV-1 infection
Country	United States
Experimental methods	CD4 T-cell Elispot - IFNγ, HLA binding
Keywords	binding affinity, immunodominance, HLA cross-presentation

Notes

• 67 Gag and Nef peptides restricted by HLA-DRB1 were characterized immunologically in 17 controllers and 9 progressors. HLA allele DRB1*15:02 was associated with low HIV-1 viremia and could promiscuously present peptides with lower avidity. HLA DRB1*03:01, however, was associated with high viremia and specific presentation of peptides. Moreover, Nef peptides were exclusively restricted by HLA-DRB1 variants linked with low viremia. Individuals with low viremia-linked HLA-DRB1 alleles also had greater breadth of HIV-specific CD4+ T cell responses. DRB1 allelic expression can impact HIV replication.
• Overlapping peptide-7 (OLP-7), ERFAVNPGLLETSEGCR, was promiscuous as it was restricted by 4 different HLA-DR across the HIV proteome as determined by IFN-γ EliSpot.

References

Ranasinghe2013 Srinika Ranasinghe, Sam Cutler, Isaiah Davis, Richard Lu, Damien Z. Soghoian, Ying Qi, John Sidney, Gregory Kranias, Michael D. Flanders, Madelene Lindqvist, Bjorn Kuhl, Galit Alter, Steven G. Deeks, Bruce D. Walker, Xiaojiang Gao, Alessandro Sette, Mary Carrington, and Hendrik Streeck. Association of HLA-DRB1-Restricted CD4+ T Cell Responses with HIV Immune Control. Nat. Med., 19(7):930-933, Jul 2013. PubMed ID: 23793098. Show all entries for this paper.

Displaying record number 201649

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HXB2 Location	Gag(42-58) p17(42-58) DNA(913..963)	Gag Epitope Map
Author Location	p17(9-26)
Epitope	ERFAVNPGLLETSEGCR	Epitope Alignment
Epitope Name	OLP 7
Subtype	B
Species (MHC/HLA)	human
Immunogen	HIV-1 infection
Country	United States
Experimental methods	CD4 T-cell Elispot - IFNγ
Keywords	immunodominance, novel epitope

Notes

• 93 treatment-naive subjects in various stages of HIV-1 infection were analyzed for CD4 T-cell responses to the HIV B clade proteome using 410 overlapping peptides (OLPs). HTL responses were detected in 92% patients and breadth of these Gag responses were inversely correlated to viral load (VL). Targeting of 3 immunodominant Gag peptides was found to be linked to control of HIV infection.
• Gag/Env mean response ratios were associated with effective immunity, and a robust marker of viral control, the lowest ratios being found in elite controllers and the highest in high-VL progressors.
• 10% of subjects responded to this immunodominant Gag-p17 peptide ERFAVNPGLLETSEGCR.

References

Ranasinghe2012 Srinika Ranasinghe, Michael Flanders, Sam Cutler, Damien Z. Soghoian, Musie Ghebremichael, Isaiah Davis, Madelene Lindqvist, Florencia Pereyra, Bruce D. Walker, David Heckerman, and Hendrik Streeck. HIV-Specific CD4 T Cell Responses to Different Viral Proteins Have Discordant Associations with Viral Load and Clinical Outcome. J. Virol., 86(1):277-283, Jan 2012. PubMed ID: 22031937. Show all entries for this paper.