HIV molecular immunology database

 

Search T Helper/CD4+ T-Cell Epitope Database

Found 18 matching records:

Displaying record number 201132

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HXB2 Location Gag(73-89)
p17(73-89)
DNA(1006..1056)
Gag Epitope Map
Author Location p17(73-89 clade B consensus)
Epitope EELRSLYNTVATLYCVH Epitope Alignment
EELRSLYNTVATLYCVH epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*04:01, DRB1*04:05, DRB1*07:01, DRB1*11:01, DRB1*13:02, DRB1*15:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201133

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HXB2 Location Gag(165-177)
p24(33-45)
DNA(1282..1320)
Gag Epitope Map
Author Location p24(33-45 clade B consensus)
Epitope SPEVIPMFSALSE Epitope Alignment
SPEVIPMFSALSE epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*03:01, DRB1*04:01, DRB1*04:05, DRB1*11:01, DRB1*15:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201134

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HXB2 Location Gag(263-282)
p24(131-150)
DNA(1576..1635)
Gag Epitope Map
Author Location p24(131-150 clade B consensus)
Epitope KRWIILGLNKIVRMYSPTSI Epitope Alignment
KRWIILGLNKIVRMYSPTSI epitope logo
Subtype B
Species (MHC/HLA) human(DRB, DRB1*01:01, DRB1*03:01, DRB1*04:01, DRB1*04:05, DRB1*07:01, DRB1*11:01, DRB1*13:02)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201135

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HXB2 Location Gag(480-494)
p2p7p1p6(117-131)
DNA(2227..2271)
Gag Epitope Map
Author Location p6(32-46 clade B consensus)
Epitope DKELYPLASLRSLFG Epitope Alignment
DKELYPLASLRSLFG epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*04:01, DRB1*04:05, DRB1*07:01, DRB1*11:01, DRB1*15:01, DRB5*01:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201136

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HXB2 Location Pol(63-77)
Protease(7-21)
DNA(2271..2315)
Pol Epitope Map
Author Location Protease(7-21 clade B consensus)
Epitope QRPLVTIKIGGQLKE Epitope Alignment
QRPLVTIKIGGQLKE epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*11:01, DRB1*15:01, DRB5*01:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201137

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HXB2 Location Pol(136-150)
Protease(80-94)
DNA(2490..2534)
Pol Epitope Map
Author Location Protease(80-94 clade B consensus)
Epitope TPVNIIGRNLLTQIG Epitope Alignment
TPVNIIGRNLLTQIG epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*11:01, DRB1*13:02, DRB1*15:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201138

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HXB2 Location Pol(785-799)
Integrase(70-84)
DNA(4437..4481)
Pol Epitope Map
Author Location Integrase(70-84 clade B consensus)
Epitope GKIILVAVHVASGYI Epitope Alignment
GKIILVAVHVASGYI epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*04:01, DRB1*04:05, DRB1*07:01, DRB1*11:01, DRB1*13:02, DRB1*15:01, DRB5*01:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201147

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HXB2 Location Vif(144-158)
DNA(5470..5514)
Vif Epitope Map
Author Location Vif(144-158 clade B consensus)
Epitope SLQYLALVALVAPKK Epitope Alignment
SLQYLALVALVAPKK epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*04:01, DRB1*04:05, DRB1*07:01, DRB1*11:01, DRB1*15:01, DRB5*01:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201145

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HXB2 Location Vpr(58-72)
DNA(5730..5774)
Vpr Epitope Map
Author Location Vpr(58-72 clade B consensus)
Epitope EAIIRILQQLLFIHF Epitope Alignment
EAIIRILQQLLFIHF epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*04:05, DRB1*15:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201146

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HXB2 Location Vpr(65-82)
DNA(5751..5804)
Vpr Epitope Map
Author Location Vpr(65-82 clade B consensus)
Epitope QQLLFIHFRIGCRHSRIG Epitope Alignment
QQLLFIHFRIGCRHSRIG epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*04:05, DRB1*07:01, DRB1*11:01, DRB1*13:02, DRB1*15:01, DRB5*01:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201144

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HXB2 Location Rev(11-27)
DNA(6000..6045,8379..8383)
Rev Epitope Map
Author Location Rev(11-276 clade B consensus)
Epitope ELLKTVRLIKFLYQSNP Epitope Alignment
ELLKTVRLIKFLYQSNP epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*03:01, DRB1*04:01, DRB1*04:05, DRB1*07:01, DRB1*11:01, DRB1*13:02, DRB1*15:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201148

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HXB2 Location Vpu(6-20)
DNA(6077..6121)
Vpu Epitope Map
Author Location Vpu(6-20 clade B consensus)
Epitope VLAIVALVVATIIAI Epitope Alignment
VLAIVALVVATIIAI epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201140

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HXB2 Location gp160(19-31)
gp120(19-31)
DNA(6279..6317)
gp160 Epitope Map
Author Location gp160(19-31 clade B consensus)
Epitope TMLLGMLMICSAA Epitope Alignment
TMLLGMLMICSAA epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*04:05, DRB1*11:01)
Immunogen HIV-1 infection, computer prediction
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201141

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HXB2 Location gp160(174-185)
gp120(174-185)
DNA(6744..6779)
gp160 Epitope Map
Author Location gp160(174-185 clade B consensus)
Epitope ALFYKLDVVPID Epitope Alignment
ALFYKLDVVPID epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*04:01, DRB1*04:05, DRB1*07:01, DRB1*11:01, DRB1*13:02)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201142

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HXB2 Location gp160(188-201)
gp120(188-201)
DNA(6786..6827)
gp160 Epitope Map
Author Location gp160(188-201 clade B consensus)
Epitope NTSYRLISCNTSVI Epitope Alignment
NTSYRLISCNTSVI epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*04:01, DRB1*04:05, DRB1*07:01, DRB1*11:01, DRB1*13:02, DRB1*15:01, DRB5*01:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201143

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HXB2 Location gp160(481-498)
gp120(481-498)
DNA(7665..7718)
gp160 Epitope Map
Author Location gp160(481-498 clade B consensus)
Epitope SELYLYKVVKIEPLGVAP Epitope Alignment
SELYLYKVVKIEPLGVAP epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*04:01, DRB1*04:05, DRB1*07:01, DRB1*11:01, DRB1*13:02, DRB1*15:01, DRB5*01:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201139

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HXB2 Location gp160(772-787)
gp41(261-276)
DNA(8538..8585)
gp160 Epitope Map
Author Location gp41(261-276 clade B consensus)
Epitope RDLLLIVTRIVELLGR Epitope Alignment
RDLLLIVTRIVELLGR epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*07:01, DRB1*11:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


Displaying record number 201149

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HXB2 Location Nef(180-194)
DNA(9334..9378)
Nef Epitope Map
Author Location Nef(180-194 clade B consensus)
Epitope VLEWRFDSRLAFHHV Epitope Alignment
VLEWRFDSRLAFHHV epitope logo
Subtype B
Species (MHC/HLA) human(DRB1*01:01, DRB1*07:01, DRB1*11:01, DRB1*15:01, DRB5*01:01)
Immunogen HIV-1 infection
Country Brazil
Experimental methods CD4 T-cell Elispot - IFNγ, HLA binding
Keywords binding affinity, computational epitope prediction, HLA cross-presentation, chronic infection

Notes

References

Fonseca2006 Simone G Fonseca, Adriana Coutinho-Silva, Luiz Augusto M. Fonseca, Aluisio C. Segurado, Sandra L. Moraes, Hélcio Rodrigues, Juergen Hammer, Esper G. Kallás, John Sidney, Alessandro Sette, Jorge Kalil, and Edecio Cunha-Neto. Identification of Novel Consensus CD4 T-Cell Epitopes from Clade B HIV-1 Whole Genome That Are Frequently Recognized by HIV-1 Infected Patients. AIDS, 20(18):2263-2273, 28 Nov 2006. PubMed ID: 17117012. Show all entries for this paper.


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