HIV molecular immunology database

 

Search T Helper/CD4+ T-Cell Epitope Database

Found 47 matching records:

Displaying record number 201700

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HXB2 Location Gag(29-43)
p17(29-43)
DNA(874..918)
Gag Epitope Map
Author Location Gag
Epitope YMIKHIVWASRELER Epitope Alignment
YMIKHIVWASRELER epitope logo
Epitope Name Gag-YA15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201696

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HXB2 Location Gag(164-178)
p24(32-46)
DNA(1279..1323)
Gag Epitope Map
Author Location Gag
Epitope FSPEVIPMFSALSEG Epitope Alignment
FSPEVIPMFSALSEG epitope logo
Epitope Name Gag-FG15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201698

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HXB2 Location Gag(260-274)
p24(128-142)
DNA(1567..1611)
Gag Epitope Map
Author Location Gag
Epitope DVYKRWIILGLNKIV Epitope Alignment
DVYKRWIILGLNKIV epitope logo
Epitope Name Gag-DV15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201701

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HXB2 Location Gag(261-275)
p24(129-143)
DNA(1570..1614)
Gag Epitope Map
Author Location Gag
Epitope IYKRWIILGLNKIVR Epitope Alignment
IYKRWIILGLNKIVR epitope logo
Epitope Name Gag-IR15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201689

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HXB2 Location Gag(264-278)
p24(132-146)
DNA(1579..1623)
Gag Epitope Map
Author Location Gag
Epitope RWIILGLNKIVRMYS Epitope Alignment
RWIILGLNKIVRMYS epitope logo
Epitope Name Gag-RS15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201697

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HXB2 Location Gag(265-279)
p24(133-147)
DNA(1582..1626)
Gag Epitope Map
Author Location Gag
Epitope WIILGLNKIVRMYSP Epitope Alignment
WIILGLNKIVRMYSP epitope logo
Epitope Name Gag-WP15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201692

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HXB2 Location Gag(267-281)
p24(135-149)
DNA(1588..1632)
Gag Epitope Map
Author Location Gag
Epitope ILGLNKIVRMYSPVS Epitope Alignment
ILGLNKIVRMYSPVS epitope logo
Epitope Name Gag-IS15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201660

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HXB2 Location Gag(269-283)
p24(137-151)
DNA(1594..1638)
Gag Epitope Map
Author Location Gag
Epitope GLNKIVRMYSPTSIL Epitope Alignment
GLNKIVRMYSPTSIL epitope logo
Epitope Name Gag-GL15_T12
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201653

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HXB2 Location Gag(269-283)
p24(137-151)
DNA(1594..1638)
Gag Epitope Map
Author Location Gag
Epitope GLNKIVRMYSPVSIL Epitope Alignment
GLNKIVRMYSPVSIL epitope logo
Epitope Name Gag-GL15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201694

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HXB2 Location Gag(273-287)
p24(141-155)
DNA(1606..1650)
Gag Epitope Map
Author Location Gag
Epitope IVRMYSPVSILDIKQ Epitope Alignment
IVRMYSPVSILDIKQ epitope logo
Epitope Name Gag-IQ15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201702

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HXB2 Location Gag(291-305)
p24(159-173)
DNA(1660..1704)
Gag Epitope Map
Author Location Gag
Epitope ESFRDYVDRFYKTLR Epitope Alignment
ESFRDYVDRFYKTLR epitope logo
Epitope Name Gag-ER15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201626

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HXB2 Location Gag(297-311)
p24(165-179)
DNA(1678..1722)
Gag Epitope Map
Author Location p24
Epitope VDRFYKTLRAEQASQ Epitope Alignment
VDRFYKTLRAEQASQ epitope logo
Epitope Name Gag-VQ15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201699

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HXB2 Location Gag(312-326)
p24(180-194)
DNA(1723..1767)
Gag Epitope Map
Author Location Gag
Epitope EVKNWMTDTLLVQNA Epitope Alignment
EVKNWMTDTLLVQNA epitope logo
Epitope Name Gag-EA15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201695

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HXB2 Location Gag(315-329)
p24(183-197)
DNA(1732..1776)
Gag Epitope Map
Author Location Gag
Epitope NWMTDILLVQNANPD Epitope Alignment
NWMTDILLVQNANPD epitope logo
Epitope Name Gag-ND15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201693

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HXB2 Location Gag(356-370)
p24(224)-p2p7p1p6(7)
DNA(1855..1899)
Gag Epitope Map
Author Location Gag
Epitope PSHKARVLAEAMSQA Epitope Alignment
PSHKARVLAEAMSQA epitope logo
Epitope Name Gag-PA15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201686

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HXB2 Location Pol(154-168)
Protease(98)-RT(13)
DNA(2544..2588)
Pol Epitope Map
Author Location Pol
Epitope NFPISPIETVPVKLR Epitope Alignment
NFPISPIETVPVKLR epitope logo
Epitope Name Pol-NR15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201687

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HXB2 Location Pol(252-266)
RT(97-111)
DNA(2838..2882)
Pol Epitope Map
Author Location Pol
Epitope PSGLKKKKSVTVLDM Epitope Alignment
PSGLKKKKSVTVLDM epitope logo
Epitope Name Pol-PM15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201682

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HXB2 Location Pol(406-420)
RT(251-265)
DNA(3300..3344)
Pol Epitope Map
Author Location Pol
Epitope SWTVNDIQKLVGKLV Epitope Alignment
SWTVNDIQKLVGKLV epitope logo
Epitope Name Pol-SV15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201691

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HXB2 Location Pol(409-423)
RT(254-268)
DNA(3309..3353)
Pol Epitope Map
Author Location Pol
Epitope VHDIQKLVGKLNWAS Epitope Alignment
VHDIQKLVGKLNWAS epitope logo
Epitope Name Pol-VS15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201681

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HXB2 Location Pol(566-580)
RT(411-425)
DNA(3780..3824)
Pol Epitope Map
Author Location Pol
Epitope IPEWEFVNTPPLVKL Epitope Alignment
IPEWEFVNTPPLVKL epitope logo
Epitope Name Pol-IL15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201684

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HXB2 Location Pol(568-582)
RT(413-427)
DNA(3786..3830)
Pol Epitope Map
Author Location Pol
Epitope KWEFVNTPPLVKLWY Epitope Alignment
KWEFVNTPPLVKLWY epitope logo
Epitope Name Pol-KY15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201690

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HXB2 Location Pol(568-582)
RT(413-427)
DNA(3786..3830)
Pol Epitope Map
Author Location Pol
Epitope EWEFVNTPPLVKLWY Epitope Alignment
EWEFVNTPPLVKLWY epitope logo
Epitope Name Pol-EY15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201688

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HXB2 Location Pol(794-808)
Integrase(79-93)
DNA(4464..4508)
Pol Epitope Map
Author Location Pol
Epitope VTSGYIEAEVIPAET Epitope Alignment
VTSGYIEAEVIPAET epitope logo
Epitope Name Pol-PM15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201683

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HXB2 Location Pol(886-900)
Integrase(171-185)
DNA(4740..4784)
Pol Epitope Map
Author Location Pol
Epitope HLKTAVQMAVYIHNF Epitope Alignment
HLKTAVQMAVYIHNF epitope logo
Epitope Name Pol-HF15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201685

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HXB2 Location Pol(935-949)
Integrase(220-234)
DNA(4887..4931)
Pol Epitope Map
Author Location Pol
Epitope ISKFRVYYRDSRDPI Epitope Alignment
ISKFRVYYRDSRDPI epitope logo
Epitope Name Pol-II15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201662

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HXB2 Location Tat(31-45)
DNA(5921..5965)
Tat Epitope Map
Author Location Tat
Epitope SYHCLVCFQTKGLGI Epitope Alignment
SYHCLVCFQTKGLGI epitope logo
Epitope Name Tat-SI15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201661

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HXB2 Location Tat(39-53)
DNA(5945..5989)
Tat Epitope Map
Author Location Tat
Epitope ITKALGISYGRKKRR Epitope Alignment
ITKALGISYGRKKRR epitope logo
Epitope Name Tat-IR15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201663

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HXB2 Location Tat(64-80)
DNA(6020..6045,8379..8403)
Tat Epitope Map
Author Location Tat
Epitope DHQNLISKQPLPRTQ Epitope Alignment
DHQNLISKQPLPRTQ epitope logo
Epitope Name Tat-DQ15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201677

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HXB2 Location gp160(35-49)
gp120(35-49)
DNA(6327..6371)
gp160 Epitope Map
Author Location Env
Epitope WVTVYYGVPVWKDAE Epitope Alignment
WVTVYYGVPVWKDAE epitope logo
Epitope Name Env-WE15_D13
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201680

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HXB2 Location gp160(253-267)
gp120(253-267)
DNA(6981..7025)
gp160 Epitope Map
Author Location Env
Epitope PVVSTQLLLNGSLAE Epitope Alignment
PVVSTQLLLNGSLAE epitope logo
Epitope Name Env-PE15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201676

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HXB2 Location gp160(572-586)
gp41(61-75)
DNA(7938..7982)
gp160 Epitope Map
Author Location Env
Epitope GIKQLQARVLAVERY Epitope Alignment
GIKQLQARVLAVERY epitope logo
Epitope Name Env-GY15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201678

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HXB2 Location gp160(683-697)
gp41(172-186)
DNA(8271..8315)
gp160 Epitope Map
Author Location Env
Epitope RTFIMIVGGLIGLRI Epitope Alignment
RTFIMIVGGLIGLRI epitope logo
Epitope Name Env-RI15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201679

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HXB2 Location gp160(699-713)
gp41(188-202)
DNA(8319..8363)
gp160 Epitope Map
Author Location Env
Epitope FVVLSIVNRVRQGYS Epitope Alignment
FVVLSIVNRVRQGYS epitope logo
Epitope Name Env-FS15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201671

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HXB2 Location Nef(3-17)
DNA(8803..8847)
Nef Epitope Map
Author Location Nef
Epitope GKWSKSSIVGWSAVR Epitope Alignment
GKWSKSSIVGWSAVR epitope logo
Epitope Name Nef-GR15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201669

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HXB2 Location Nef(4-18)
DNA(8806..8850)
Nef Epitope Map
Author Location Nef
Epitope KWSKNRIVGWPAVRE Epitope Alignment
KWSKNRIVGWPAVRE epitope logo
Epitope Name Nef-KE15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201652

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HXB2 Location Nef(68-82)
DNA(8998..9042)
Nef Epitope Map
Author Location Nef
Epitope FPVRPQVPLRPMTYR Epitope Alignment
FPVRPQVPLRPMTYR epitope logo
Epitope Name Nef-FR15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201670

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HXB2 Location Nef(73-87)
DNA(9013..9057)
Nef Epitope Map
Author Location Nef
Epitope QVPLRPMTYKGALDL Epitope Alignment
QVPLRPMTYKGALDL epitope logo
Epitope Name Nef-QL15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201664

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HXB2 Location Nef(84-98)
DNA(9046..9090)
Nef Epitope Map
Author Location Nef
Epitope AVDLSHFLKEKGGLM Epitope Alignment
AVDLSHFLKEKGGLM epitope logo
Epitope Name Nef-AM15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201667

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HXB2 Location Nef(88-102)
DNA(9058..9102)
Nef Epitope Map
Author Location Nef
Epitope SWFLKEKGGLEGLIY Epitope Alignment
SWFLKEKGGLEGLIY epitope logo
Epitope Name Nef-SY15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201666

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HXB2 Location Nef(88-102)
DNA(9058..9102)
Nef Epitope Map
Author Location Nef
Epitope GWFLKEKGGLDGLIY Epitope Alignment
GWFLKEKGGLDGLIY epitope logo
Epitope Name Nef-GY15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201675

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HXB2 Location Nef(140-154)
DNA(9214..9258)
Nef Epitope Map
Author Location Nef
Epitope GWCFKLVPVDPDEVE Epitope Alignment
GWCFKLVPVDPDEVE epitope logo
Epitope Name Nef-GE15_D10_D12
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201665

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HXB2 Location Nef(140-154)
DNA(9214..9258)
Nef Epitope Map
Author Location Nef
Epitope GWPFKLVPVDPREVQ Epitope Alignment
GWPFKLVPVDPREVQ epitope logo
Epitope Name Nef-GQ15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201674

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HXB2 Location Nef(140-154)
DNA(9214..9258)
Nef Epitope Map
Author Location Nef
Epitope GWCFKLVPVEPEEVE Epitope Alignment
GWCFKLVPVEPEEVE epitope logo
Epitope Name Nef-GE15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201673

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HXB2 Location Nef(179-193)
DNA(9331..9375)
Nef Epitope Map
Author Location Nef
Epitope EVLVWRFDSRLAFHH Epitope Alignment
EVLVWRFDSRLAFHH epitope logo
Epitope Name Nef-EH15_V4_R6
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201668

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HXB2 Location Nef(179-193)
DNA(9331..9375)
Nef Epitope Map
Author Location Nef
Epitope EVLMWKFDSRLALTH Epitope Alignment
EVLMWKFDSRLALTH epitope logo
Epitope Name Nef-EH15_L12_T13
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201651

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HXB2 Location Nef(179-193)
DNA(9331..9375)
Nef Epitope Map
Author Location Nef
Epitope EVLMWKFDSRLAFHH Epitope Alignment
EVLMWKFDSRLAFHH epitope logo
Epitope Name Nef-EH15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


Displaying record number 201672

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HXB2 Location Nef(182-196)
DNA(9340..9384)
Nef Epitope Map
Author Location Nef
Epitope RWEFDSSLARRHLAR Epitope Alignment
RWEFDSSLARRHLAR epitope logo
Epitope Name Nef-RR15
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country Sweden
Experimental methods CD4 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords subtype comparisons, computational epitope prediction

Notes

References

Buggert2012 Marcus Buggert, Melissa M. Norström, Chris Czarnecki, Emmanuel Tupin, Ma Luo, Katarina Gyllensten, Anders Sönnerborg, Claus Lundegaard, Ole Lund, Morten Nielsen, and Annika C. Karlsson. Characterization of HIV-Specific CD4+ T Cell Responses Against Peptides Selected with Broad Population and Pathogen Coverage. PLoS One, 7(7):e39874, 2012. PubMed ID: 22792193. Show all entries for this paper.


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