HIV molecular immunology database
Found 8 matching records:
Download this epitope record as JSON.
HXB2 Location | Vif(79-87) DNA(5275..5301) |
Vif Epitope Map |
---|---|---|
Author Location | Vif(79-87) | |
Epitope |
WHLGHGVSI
|
Epitope Alignment
|
Species (MHC/HLA) | human(B*15:10) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | optimal epitope, A-list |
Llano2019 Anuska Llano, Samandhy Cedeño, Sandra Silva Arrieta, and Christian Brander. The 2019 Optimal HIV CTL Epitopes Update: Growing Diversity in Epitope Length and HLA restriction. 2019. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Vif(79-87) DNA(5275..5301) |
Vif Epitope Map |
---|---|---|
Author Location | Nef( C consensus) | |
Epitope |
WHLGHGVSI
|
Epitope Alignment
|
Epitope Name | WI9 | |
Subtype | C | |
Species (MHC/HLA) | human(B*15:10) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | A*26:01, A*74:01, B*08:01, B*15:10, C*02:02, C*08:01 | |
Country | South Africa | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | assay or method development, characterizing CD8+ T cells |
Kiepiela2004 Photini Kiepiela, Alasdair J. Leslie, Isobella Honeyborne, Danni Ramduth, Christina Thobakgale, Senica Chetty, Prinisha Rathnavalu, Corey Moore, Katja J. Pfafferott, Louise Hilton, Peter Zimbwa, Sarah Moore, Todd Allen, Christian Brander, Marylyn M. Addo, Marcus Altfeld, Ian James, Simon Mallal, Michael Bunce, Linda D. Barber, James Szinger, Cheryl Day, Paul Klenerman, James Mullins, Bette Korber, Hoosen M. Coovadia, Bruce D. Walker, and Philip J. R. Goulder. Dominant Influence of HLA-B in Mediating the Potential Co-Evolution of HIV and HLA. Nature, 432(7018):769-775, 9 Dec 2004. LA-UR 04-5920. PubMed ID: 15592417. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Vif(79-87) DNA(5275..5301) |
Vif Epitope Map |
---|---|---|
Author Location | ( C consensus) | |
Epitope |
WHLGHGVSI
|
Epitope Alignment
|
Subtype | C | |
Species (MHC/HLA) | human(B*15:10) | |
Immunogen | HIV-1 infection | |
Country | South Africa | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | characterizing CD8+ T cells |
Kiepiela2004 Photini Kiepiela, Alasdair J. Leslie, Isobella Honeyborne, Danni Ramduth, Christina Thobakgale, Senica Chetty, Prinisha Rathnavalu, Corey Moore, Katja J. Pfafferott, Louise Hilton, Peter Zimbwa, Sarah Moore, Todd Allen, Christian Brander, Marylyn M. Addo, Marcus Altfeld, Ian James, Simon Mallal, Michael Bunce, Linda D. Barber, James Szinger, Cheryl Day, Paul Klenerman, James Mullins, Bette Korber, Hoosen M. Coovadia, Bruce D. Walker, and Philip J. R. Goulder. Dominant Influence of HLA-B in Mediating the Potential Co-Evolution of HIV and HLA. Nature, 432(7018):769-775, 9 Dec 2004. LA-UR 04-5920. PubMed ID: 15592417. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Vif(79-87) DNA(5275..5301) |
Vif Epitope Map |
---|---|---|
Author Location | ( C consensus) | |
Epitope |
WHLGHGVSI
|
Epitope Alignment
|
Subtype | C | |
Species (MHC/HLA) | human(B*15:10) | |
Immunogen | HIV-1 infection | |
Country | South Africa | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | epitope processing, rate of progression, optimal epitope |
Kiepiela2007 Photini Kiepiela, Kholiswa Ngumbela, Christina Thobakgale, Dhanwanthie Ramduth, Isobella Honeyborne, Eshia Moodley, Shabashini Reddy, Chantal de Pierres, Zenele Mncube, Nompumelelo Mkhwanazi, Karen Bishop, Mary van der Stok, Kriebashnie Nair, Nasreen Khan, Hayley Crawford, Rebecca Payne, Alasdair Leslie, Julia Prado, Andrew Prendergast, John Frater, Noel McCarthy, Christian Brander, Gerald H. Learn, David Nickle, Christine Rousseau, Hoosen Coovadia, James I. Mullins, David Heckerman, Bruce D. Walker, and Philip Goulder. CD8+ T-Cell Responses to Different HIV Proteins Have Discordant Associations with Viral Load. Nat. Med., 13(1):46-53, Jan 2007. PubMed ID: 17173051. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Vif(79-87) DNA(5275..5301) |
Vif Epitope Map |
---|---|---|
Author Location | Vif(79-87) | |
Epitope |
WHLGHGVSI
|
Epitope Alignment
|
Subtype | C | |
Species (MHC/HLA) | human(B*15:10) | |
Immunogen | HIV-1 infection | |
Experimental methods | Other | |
Keywords | HLA associated polymorphism |
Boutwell2007 Christian L. Boutwell and M. Essex. Identification of HLA Class I-Associated Amino Acid Polymorphisms in the HIV-1C Proteome. AIDS Res. Hum. Retroviruses, 23(1):165-174, Jan 2007. PubMed ID: 17263647. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Vif(79-87) DNA(5275..5301) |
Vif Epitope Map |
---|---|---|
Author Location | ||
Epitope |
WHLGHGVSI
|
Epitope Alignment
|
Subtype | C | |
Species (MHC/HLA) | human(B*15:10) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | A*23:01, A*29:02, B*15:10, B*45:01, C*06:02, C*16:01 | |
Country | South Africa | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Chromium-release assay | |
Keywords | rate of progression, optimal epitope |
Gray2009 Clive M. Gray, Mandla Mlotshwa, Catherine Riou, Tiyani Mathebula, Debra de Assis Rosa, Tumelo Mashishi, Cathal Seoighe, Nobubelo Ngandu, Francois van Loggerenberg, Lynn Morris, Koleka Mlisana, Carolyn Williamson, Salim Abdool Karim, and CAPRISA 002 Acute Infection Study Team. Human Immunodeficiency Virus-Specific gamma Interferon Enzyme-Linked Immunospot Assay Responses Targeting Specific Regions of the Proteome during Primary Subtype C Infection Are Poor Predictors of the Course of Viremia and Set Point. J. Virol., 83(1):470-478, Jan 2009. PubMed ID: 18945774. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Vif(79-87) DNA(5275..5301) |
Vif Epitope Map |
---|---|---|
Author Location | Vif(79-87) | |
Epitope |
WHLGHGVSI
|
Epitope Alignment
|
Subtype | C | |
Species (MHC/HLA) | human(B*15:10) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | CAP045: A*23:01, A*29:02, B*15:10, B*45:01, C*16:01, C*16:02 | |
Country | South Africa | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Other | |
Keywords | computational epitope prediction, escape, acute/early infection, mutation acquisition |
Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Vif(79-87) DNA(5275..5301) |
Vif Epitope Map |
---|---|---|
Author Location | Vif(79-87) | |
Epitope |
WHLGHGVSI
|
Epitope Alignment
|
Subtype | C | |
Species (MHC/HLA) | human(B*15:10) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | CAP210: A*68:02, B*15:10, C*03:04 | |
Country | South Africa | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Other | |
Keywords | computational epitope prediction, escape, acute/early infection, mutation acquisition |
Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.