HIV molecular immunology database
Found 14 matching records:
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
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Author Location | Gag(433-) | |
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Epitope Name | Gag433 | |
Subtype | A | |
Species (MHC/HLA) | human(A*02) | |
Immunogen | HIV-1 infection, vaccine | |
Patient MHC/HLA | P17: A*02:01, A*68:01, B*50:01, B*58:01 | |
Country | Guinea-Bissau | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | vaccine-induced immune responses, vaccine antigen design, therapeutic vaccine, chronic infection |
Vaccine type | peptide |
---|---|
Vaccine strain | A clade |
Adjuvant | CAF01 |
Roman2013 Victor Raúl Gómez Román, Kristoffer Jarlov Jensen, Sanne Skov Jensen, Christian Leo-Hansen, Sanne Jespersen, David da Silva Té, Candida Medina Rodrigues, Christoph Mikkel Janitzek, Lasse Vinner, Terese Lea Katzenstein, Peter Andersen, Ingrid Kromann, Lars Vibe Andreasen, Ingrid Karlsson, and Anders Fomsgaard. Therapeutic Vaccination Using Cationic Liposome-Adjuvanted HIV Type 1 Peptides Representing HLA-Supertype-Restricted Subdominant T Cell Epitopes: Safety, Immunogenicity, and Feasibility in Guinea-Bissau. AIDS Res Hum Retroviruses, 29(11):1504-1512, Nov 2013. PubMed ID: 23634822. Show all entries for this paper.
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HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
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Author Location | p2p7p1p6(70-77) | |
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Subtype | B | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | 63794: A*02:01:01G, B*07:02:01G, B*44:02:01G, C*07:04:01G; 98621: A*02:01:01G, B*40:01:01G, B*44:02:01G, C*03:04:01G, C*05:01 | |
Country | United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | acute/early infection |
Kunwar2013 Pratima Kunwar, Natalie Hawkins, Warren L. Dinges, Yi Liu, Erin E. Gabriel, David A. Swan, Claire E. Stevens, Janine Maenza, Ann C. Collier, James I. Mullins, Tomer Hertz, Xuesong Yu, and Helen Horton. Superior Control of HIV-1 Replication by CD8+ T Cells Targeting Conserved Epitopes: Implications for HIV Vaccine Design. PLoS One, 8(5):e64405, 2013. PubMed ID: 23741326. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | Gag | |
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Epitope Name | Gag433 | |
Species (MHC/HLA) | transgenic mouse(A*02:01) | |
Immunogen | vaccine | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Chromium-release assay, Flow cytometric T-cell cytokine assay | |
Keywords | immunodominance, dendritic cells |
Vaccine type | polyepitope |
---|---|
Vaccine strain | multiple epitope immunogen |
Vaccine component | Env, Gag, Pol, Vif, Vpu |
Kloverpris2009 Henrik N. Kloverpris, Ingrid Karlsson, Mette Thorn, Søren Buus, and Anders Fomsgaard. Immune Hierarchy among HIV-1 CD8+ T Cell Epitopes Delivered by Dendritic Cells Depends on MHC-I Binding Irrespective of Mode of Loading and Immunization in HLA-A*0201 Mice. APMIS, 117(11):849-585, Nov 2009. PubMed ID: 19845536. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | Gag(433-440) | |
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Epitope Name | FS8 | |
Subtype | A1, D | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Country | Uganda | |
Experimental methods | HLA binding, Relative replication capacity assay | |
Keywords | subtype comparisons, escape, HLA associated polymorphism |
Kinloch2019 Natalie N. Kinloch, Guinevere Q. Lee, Jonathan M. Carlson, Steven W. Jin, Chanson J. Brumme, Helen Byakwaga, Conrad Muzoora, Mwebesa B. Bwana, Kyle D. Cobarrubias, Peter W. Hunt, Jeff N. Martin, Mary Carrington, David R. Bangsberg, P. Richard Harrigan, Mark A. Brockman, and Zabrina L. Brumme. Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity. J. Virol., 93(1), 1 Jan 2019. PubMed ID: 30305354. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | Gag(433-439) | |
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | peptide-HLA interaction | |
Experimental methods | Intracellular cytokine staining, Other | |
Keywords | assay or method development, NK cells |
Partridge2018 Thomas Partridge, Annalisa Nicastri, Anna E. Kliszczak, Louis-Marie Yindom, Benedikt M. Kessler, Nicola Ternette, and Persephone Borrow. Discrimination Between Human Leukocyte Antigen Class I-Bound and Co-Purified HIV-Derived Peptides in Immunopeptidomics Workflows. Front. Immunol., 9:912, 2018. PubMed ID: 29780384. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | Gag | |
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Epitope Name | Gag433 | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection, vaccine | |
Country | Denmark | |
Experimental methods | Intracellular cytokine staining, Pentamer labeling | |
Keywords | vaccine-induced immune responses, therapeutic vaccine |
Vaccine type | peptide |
---|---|
Vaccine strain | multiple epitope immunogen |
Vaccine component | HIV-1, other |
Kloverpris2009a Henrik Kloverpris, Ingrid Karlsson, Jesper Bonde, Mette Thorn, Lasse Vinner, Anders E. Pedersen, Julie L. Hentze, Betina S. Andresen, Inge M. Svane, Jan Gerstoft, Gitte Kronborg, and Anders Fomsgaard. Induction of Novel CD8+ T-Cell Responses during Chronic Untreated HIV-1 Infection by Immunization with Subdominant Cytotoxic T-Lymphocyte Epitopes. AIDS, 23(11):1329-1340, 17 Jul 2009. PubMed ID: 19528789. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | ||
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Epitope Name | FS8 | |
Subtype | B | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection, vaccine | |
Country | Japan | |
Experimental methods | CD8 T-cell Elispot - IFNγ, CTL suppression of replication, Intracellular cytokine staining | |
Keywords | vaccine-induced immune responses, variant cross-reactivity |
Murakoshi2018 Hayato Murakoshi, Chengcheng Zou, Nozomi Kuse, Tomohiro Akahoshi, Takayuki Chikata, Hiroyuki Gatanaga, Shinichi Oka, Tomáš Hanke, and Masafumi Takiguchi. CD8+ T Cells Specific for Conserved, Cross-Reactive Gag Epitopes with Strong Ability to Suppress HIV-1 Replication. Retrovirology, 15(1):46, 3 Jul 2018. PubMed ID: 29970102. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | Gag | |
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Epitope Name | Gag433 | |
Subtype | B, CRF02_AG | |
Species (MHC/HLA) | human(A2) | |
Immunogen | HIV-1 infection | |
Country | Cote D'Ivoire, Denmark, Ghana, Guinea-Bissau, Mali, Senegal | |
Experimental methods | Intracellular cytokine staining, Pentamer labeling | |
Keywords | vaccine antigen design |
Corbet2003 Sylvie Corbet, Henrik Vedel Nielsen, Lasse Vinner, Sanne Lauemoller, Dominic Therrien, Sheila Tang, Gitte Kronborg, Lars Mathiesen, Paul Chaplin, Søren Brunak, Søren Buus, and Anders Fomsgaard. Optimization and Immune Recognition of Multiple Novel Conserved HLA-A2, Human Immunodeficiency Virus Type 1-Specific CTL Epitopes. J. Gen. Virol., 84(Pt 9):2409-2421, Sep 2003. PubMed ID: 12917462. Show all entries for this paper.
Kloverpris2009 Henrik N. Kloverpris, Ingrid Karlsson, Mette Thorn, Søren Buus, and Anders Fomsgaard. Immune Hierarchy among HIV-1 CD8+ T Cell Epitopes Delivered by Dendritic Cells Depends on MHC-I Binding Irrespective of Mode of Loading and Immunization in HLA-A*0201 Mice. APMIS, 117(11):849-585, Nov 2009. PubMed ID: 19845536. Show all entries for this paper.
Perez2008 Carina L. Pérez, Mette V. Larsen, Rasmus Gustafsson, Melissa M. Norström, Ann Atlas, Douglas F. Nixon, Morten Nielsen, Ole Lund, and Annika C. Karlsson. Broadly Immunogenic HLA Class I Supertype-Restricted Elite CTL Epitopes Recognized in a Diverse Population Infected with Different HIV-1 Subtypes. J. Immunol., 180(7):5092-5100, 1 Apr 2008. PubMed ID: 18354235. Show all entries for this paper.
Thorn2007 Mette Thorn, Sheila Tang, Dominic Therrien, Henrik Kløverpris, Lasse Vinner, Gitte Kronborg, Jan Gerstoft, Sylvie Corbet, and Anders Fomsgaard. Sequence Conservation of Subdominant HLA-A2-Binding CTL Epitopes in HIV-1 Clinical Isolates and CD8+ T-Lymphocyte Cross-Recognition May Explain the Immune Reaction in Infected Individuals. APMIS, 115(6):757-768, Jun 2007. PubMed ID: 17550385. Show all entries for this paper.
Vinner2011 Lasse Vinner, Birgitta Holmgren, Kristoffer J. Jensen, Joakim Esbjornsson, Marie Borggren, Julie L. Hentze, Ingrid Karlsson, Betina S. Andresen, Gregers J. Gram, Henrik Kloverpris, Peter Aaby, Zacarias José Da Silva, Eva-Maria Fenyö, and Anders Fomsgaard. Sequence Analysis of HIV-1 Isolates from Guinea-Bissau: Selection of Vaccine Epitopes Relevant in Both West African and European Countries. APMIS, 119(8):487-497, Aug 2011. PubMed ID: 21749448. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | p15(70-77) | |
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Subtype | B | |
Species (MHC/HLA) | human(A2) | |
Immunogen | HIV-1 infection | |
Country | United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | binding affinity, subtype comparisons, acute/early infection |
Malhotra2007 Uma Malhotra, Jessica Nolin, James I. Mullins, and M. Juliana McElrath. Comprehensive Epitope Analysis of Cross-Clade Gag-Specific T-Cell Responses in Individuals with Early HIV-1 Infection in the US Epidemic. Vaccine, 25(2):381-390, 4 Jan 2007. PubMed ID: 17112643. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | ||
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | Gag 433 | |
Species (MHC/HLA) | human(A2) | |
Immunogen | HIV-1 infection | |
Country | Denmark | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Chromium-release assay, Flow cytometric T-cell cytokine assay, Intracellular cytokine staining | |
Keywords | variant cross-reactivity |
Thorn2007 Mette Thorn, Sheila Tang, Dominic Therrien, Henrik Kløverpris, Lasse Vinner, Gitte Kronborg, Jan Gerstoft, Sylvie Corbet, and Anders Fomsgaard. Sequence Conservation of Subdominant HLA-A2-Binding CTL Epitopes in HIV-1 Clinical Isolates and CD8+ T-Lymphocyte Cross-Recognition May Explain the Immune Reaction in Infected Individuals. APMIS, 115(6):757-768, Jun 2007. PubMed ID: 17550385. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | Gag(433-) | |
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Epitope Name | Gag433 | |
Species (MHC/HLA) | human(A2) | |
Immunogen | HIV-1 infection | |
Country | Denmark | |
Experimental methods | Flow cytometric T-cell cytokine assay | |
Keywords | rate of progression, acute/early infection |
Fomsgaard2008 Anders Fomsgaard, Lasse Vinner, Dominic Therrien, Louise B. Jørgensen, Claus Nielsen, Lars Mathiesen, Court Pedersen, and Sylvie Corbet. Full-Length Characterization of A1/D Intersubtype Recombinant Genomes from a Therapy-Induced HIV Type 1 Controller during Acute Infection and His Noncontrolling Partner. AIDS Res. Hum. Retroviruses, 24(3):463-472, Mar 2008. PubMed ID: 18373434. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | ||
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Epitope Name | Gag433 | |
Species (MHC/HLA) | transgenic mouse(A2) | |
Immunogen | vaccine | |
Experimental methods | T-cell Elispot | |
Keywords | vaccine-induced immune responses, adjuvant comparison, vaccine antigen design |
Vaccine type | polyepitope |
---|---|
Vaccine component | Env, Gag, Nef, Pol, Vif, Vpu |
Adjuvant | CAF01 |
Fomsgaard2011 Anders Fomsgaard, Ingrid Karlsson, Gregers Gram, Christian Schou, Sheila Tang, Peter Bang, Ingrid Kromann, Peter Andersen, and Lars Vibe Andreasen. Development and Preclinical Safety Evaluation of a New Therapeutic HIV-1 Vaccine Based on 18 T-Cell Minimal Epitope Peptides Applying a Novel Cationic Adjuvant CAF01. Vaccine, 29(40):7067-7074, Sep 16 2011. PubMed ID: 21767590. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | Gag(433-) | |
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Epitope Name | Gag433 | |
Species (MHC/HLA) | human, transgenic mouse(A2) | |
Immunogen | HIV-1 infection, vaccine | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Chromium-release assay, Flow cytometric T-cell cytokine assay | |
Keywords | binding affinity, subtype comparisons, computational epitope prediction |
Vaccine type | peptide |
---|---|
Vaccine component | Gag |
Adjuvant | Incomplete Freund's Adjuvant (IFA) |
Corbet2003 Sylvie Corbet, Henrik Vedel Nielsen, Lasse Vinner, Sanne Lauemoller, Dominic Therrien, Sheila Tang, Gitte Kronborg, Lars Mathiesen, Paul Chaplin, Søren Brunak, Søren Buus, and Anders Fomsgaard. Optimization and Immune Recognition of Multiple Novel Conserved HLA-A2, Human Immunodeficiency Virus Type 1-Specific CTL Epitopes. J. Gen. Virol., 84(Pt 9):2409-2421, Sep 2003. PubMed ID: 12917462. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(433-440) p2p7p1p6(70-77) DNA(2086..2109) |
Gag Epitope Map |
---|---|---|
Author Location | Gag(433-) | |
Epitope |
FLGKIWPS
|
Epitope Alignment
|
Epitope Name | FS8 | |
Subtype | A3, B, C, CRF02_AG | |
Species (MHC/HLA) | human | |
Immunogen | HIV-1 infection | |
Country | Denmark, Guinea-Bissau | |
Experimental methods | HLA binding, Intracellular cytokine staining, Tetramer binding | |
Keywords | binding affinity, vaccine antigen design, non-susceptible form |
Karlsson2012 Ingrid Karlsson, Henrik Kløverpris, Kristoffer Jarlov Jensen, Anette Stryhn, Søren Buus, Annika Karlsson, Lasse Vinner, Philip Goulder, and Anders Fomsgaard. Identification of Conserved Subdominant HIV Type 1 CD8+ T Cell Epitopes Restricted within Common HLA Supertypes for Therapeutic HIV Type 1 Vaccines. AIDS Res. Hum. Retroviruses, 28(11):1434-1443, Nov 2012. PubMed ID: 22747336. Show all entries for this paper.