HIV molecular immunology database

 

Search CTL/CD8+ T-Cell Epitope Database

Found 113 matching records:

Displaying record number 62351

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HXB2 Location Gag(17-34)
p17(17-34)
DNA(838..891)
Gag Epitope Map
Author Location Gag(17-34)
Epitope EKIRLRPGGKKKYKLKHI Epitope Alignment
EKIRLRPGGKKKYKLKHI epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00546: A*02:01, A*32:01, B*15:01, B*40:01, C*02:02, C*03:04; 00728: A*02:01, A*03:01, B*07:02, B*40:02, C*02:02, C*07:02; 00879: A*03:01, A*33:01, B*14:02, B*58:02, C*06:02, C*08:02; 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01; 01086: A*02:05, A*03:01, B*07:06, B*53:01, C*04:01, C*07:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62336

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HXB2 Location Gag(33-50)
p17(33-50)
DNA(886..939)
Gag Epitope Map
Author Location Gag(33-50)
Epitope HIVWASRELERFAVNPGL Epitope Alignment
HIVWASRELERFAVNPGL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62344

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HXB2 Location Gag(41-58)
p17(41-58)
DNA(910..963)
Gag Epitope Map
Author Location Gag(41-58)
Epitope LERFAVNPGLLETSEGCR Epitope Alignment
LERFAVNPGLLETSEGCR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00250: A*01:01, A*31:01, B*27:03, B*44:02, C*02:02, C*06:02; 00879: A*03:01, A*33:01, B*14:02, B*58:02, C*06:02, C*08:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62390

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HXB2 Location Gag(73-90)
p17(73-90)
DNA(1006..1059)
Gag Epitope Map
Author Location Gag(73-90)
Epitope EELRSLYNTVATLYCVHQ Epitope Alignment
EELRSLYNTVATLYCVHQ epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00773: A*02:01, A*11:01, B*18:01, B*51:01, C*01:02, C*02:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62337

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HXB2 Location Gag(164-181)
p24(32-49)
DNA(1279..1332)
Gag Epitope Map
Author Location Gag(164-181)
Epitope FSPEVIPMFSALSEGATP Epitope Alignment
FSPEVIPMFSALSEGATP epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01; 00833: A*02:02, A*74:01, B*15:16, B*82:01, C*03:02, C*14:02; 20296: A*29:02, A*31:01, B*08:01, B*44:03, C*07:01, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62362

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HXB2 Location Gag(180-197)
p24(48-65)
DNA(1327..1380)
Gag Epitope Map
Author Location Gag(180-197)
Epitope TPQDLNTMLNTVGGHQAA Epitope Alignment
TPQDLNTMLNTVGGHQAA epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00674: A*02:01, A*03:01, B*07, B*40:01, C*03:04, C*07:02; 00926: A*02:02, A*02:05, B*39:10, B*45:01, C*12:03, C*16:01; 00929: A*01:01, A*74, B*15, B*81, C*02:10, C*18:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62377

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HXB2 Location Gag(204-221)
p24(72-89)
DNA(1399..1452)
Gag Epitope Map
Author Location Gag(204-221)
Epitope TINEEAAEWDRLHPVHAG Epitope Alignment
TINEEAAEWDRLHPVHAG epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00728: A*02:01, A*03:01, B*07:02, B*40:02, C*02:02, C*07:02; 20296: A*29:02, A*31:01, B*08:01, B*44:03, C*07:01, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62339

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HXB2 Location Gag(212-229)
p24(80-97)
DNA(1423..1476)
Gag Epitope Map
Author Location Gag(212-229)
Epitope WDRLHPVHAGPIAPGQMR Epitope Alignment
WDRLHPVHAGPIAPGQMR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01; 00879: A*03:01, A*33:01, B*14:02, B*58:02, C*06:02, C*08:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62347

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HXB2 Location Gag(228-245)
p24(96-113)
DNA(1471..1524)
Gag Epitope Map
Author Location Gag(228-245)
Epitope MREPRGSDIAGTTSTLQE Epitope Alignment
MREPRGSDIAGTTSTLQE epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00250: A*01:01, A*31:01, B*27:03, B*44:02, C*02:02, C*06:02; 01086: A*02:05, A*03:01, B*07:06, B*53:01, C*04:01, C*07:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62395

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HXB2 Location Gag(236-253)
p24(104-121)
DNA(1495..1548)
Gag Epitope Map
Author Location Gag(236-253)
Epitope IAGTTSTLQEQIGWMTNN Epitope Alignment
IAGTTSTLQEQIGWMTNN epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00834: A*02:05, A*30:02, B*51:01, B*58:01, C*04:01, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62404

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HXB2 Location Gag(244-261)
p24(112-129)
DNA(1519..1572)
Gag Epitope Map
Author Location Gag(244-261)
Epitope QEQIGWMTNNPPIPVGEI Epitope Alignment
QEQIGWMTNNPPIPVGEI epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00926: A*02:02, A*02:05, B*39:10, B*45:01, C*12:03, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62411

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HXB2 Location Gag(252-269)
p24(120-137)
DNA(1543..1596)
Gag Epitope Map
Author Location Gag(252-269)
Epitope NNPPIPVGEIYKRWIILG Epitope Alignment
NNPPIPVGEIYKRWIILG epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62341

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HXB2 Location Gag(260-277)
p24(128-145)
DNA(1567..1620)
Gag Epitope Map
Author Location Gag(260-277)
Epitope EIYKRWIILGLNKIVRMY Epitope Alignment
EIYKRWIILGLNKIVRMY epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00250: A*01:01, A*31:01, B*27:03, B*44:02, C*02:02, C*06:02; 00546: A*02:01, A*32:01, B*15:01, B*40:01, C*02:02, C*03:04; 01086: A*02:05, A*03:01, B*07:06, B*53:01, C*04:01, C*07:02; 00941:
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62332

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HXB2 Location Gag(268-285)
p24(136-153)
DNA(1591..1644)
Gag Epitope Map
Author Location Gag(268-285)
Epitope LGLNKIVRMYSPTSILDI Epitope Alignment
LGLNKIVRMYSPTSILDI epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01; 00926: A*02:02, A*02:05, B*39:10, B*45:01, C*12:03, C*16:01; 20296: A*29:02, A*31:01, B*08:01, B*44:03, C*07:01, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62333

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HXB2 Location Gag(292-309)
p24(160-177)
DNA(1663..1716)
Gag Epitope Map
Author Location Gag(292-309)
Epitope PFRDYVDRFYKTLRAEQA Epitope Alignment
PFRDYVDRFYKTLRAEQA epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01; 00879: A*03:01, A*33:01, B*14:02, B*58:02, C*06:02, C*08:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62345

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HXB2 Location Gag(300-317)
p24(168-185)
DNA(1687..1740)
Gag Epitope Map
Author Location Gag(300-317)
Epitope FYKTLRAEQASQEVKNWM Epitope Alignment
FYKTLRAEQASQEVKNWM epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00250: A*01:01, A*31:01, B*27:03, B*44:02, C*02:02, C*06:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62417

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HXB2 Location Gag(308-325)
p24(176-193)
DNA(1711..1764)
Gag Epitope Map
Author Location Gag(308-325)
Epitope QASQEVKNWMTETLLVQN Epitope Alignment
QASQEVKNWMTETLLVQN epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62391

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HXB2 Location Gag(316-333)
p24(184-201)
DNA(1735..1788)
Gag Epitope Map
Author Location Gag(316-333)
Epitope WMTETLLVQNANPDCKTI Epitope Alignment
WMTETLLVQNANPDCKTI epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00833: A*02:02, A*74:01, B*15:16, B*82:01, C*03:02, C*14:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62435

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HXB2 Location Gag(356-373)
p24(224)-p2p7p1p6(10)
DNA(1855..1908)
Gag Epitope Map
Author Location Gag(356-373)
Epitope PGHKARVLAEAMSQVTNS Epitope Alignment
PGHKARVLAEAMSQVTNS epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 01014: A*23:01, A*74:01, B*07:02, B*41:02, C*15:05, C*17:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62350

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HXB2 Location Gag(357-374)
p24(225)-p2p7p1p6(11)
DNA(1858..1911)
Gag Epitope Map
Author Location Gag(357-374)
Epitope GHKARVLAEAMSQVTNSA Epitope Alignment
GHKARVLAEAMSQVTNSA epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00531: A*02:01, B*07:02, B*44:02, C*03:04, C*07:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62420

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HXB2 Location Gag(364-381)
p2p7p1p6(1-18)
DNA(1879..1932)
Gag Epitope Map
Author Location Gag(364-381)
Epitope AEAMSQVTNSATIMMQRG Epitope Alignment
AEAMSQVTNSATIMMQRG epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62342

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HXB2 Location Gag(389-406)
p2p7p1p6(26-43)
DNA(1954..2007)
Gag Epitope Map
Author Location Gag(389-406)
Epitope TVKCFNCGKEGHIAKNCR Epitope Alignment
TVKCFNCGKEGHIAKNCR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00250: A*01:01, A*31:01, B*27:03, B*44:02, C*02:02, C*06:02; 00941:
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62356

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HXB2 Location Gag(397-414)
p2p7p1p6(34-51)
DNA(1978..2031)
Gag Epitope Map
Author Location Gag(997-414)
Epitope KEGHIAKNCRAPRKKGCW Epitope Alignment
KEGHIAKNCRAPRKKGCW epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00673: A*24:02, A*30:02, B*15:17, B*18:01, C*05:01, C*07:01; 01095: A*03:01, A*31:01, B*40:01, B*44:02, C*03:04, C*05:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62405

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HXB2 Location Gag(455-472)
p2p7p1p6(92-109)
DNA(2152..2205)
Gag Epitope Map
Author Location Gag(455-472)
Epitope PTAPPEESFRFGEETTTP Epitope Alignment
PTAPPEESFRFGEETTTP epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00926: A*02:02, A*02:05, B*39:10, B*45:01, C*12:03, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62393

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HXB2 Location Gag(481-498)
p2p7p1p6(118-135)
DNA(2230..2283)
Gag Epitope Map
Author Location Gag(481-498)
Epitope KELYPLASLRSLFGNDPS Epitope Alignment
KELYPLASLRSLFGNDPS epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00833: A*02:02, A*74:01, B*15:16, B*82:01, C*03:02, C*14:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62329

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HXB2 Location Pol(1-18)
Gag/Pol-TF(1-18)
DNA(2085..2138)
Pol Epitope Map
Author Location Pol(1-18)
Epitope FFREDLAFPQGKAREFSS Epitope Alignment
FFREDLAFPQGKAREFSS epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62373

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HXB2 Location Pol(49-66)
Gag/Pol-TF(49)-Protease(10)
DNA(2229..2282)
Pol Epitope Map
Author Location Pol(49-66)
Epitope QGTVSFSFPQITLWQRPL Epitope Alignment
QGTVSFSFPQITLWQRPL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62349

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HXB2 Location Pol(87-104)
Protease(31-48)
DNA(2343..2396)
Pol Epitope Map
Author Location Pol(87-104)
Epitope TVLEDINLPGRWKPKMIG Epitope Alignment
TVLEDINLPGRWKPKMIG epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00250: A*01:01, A*31:01, B*27:03, B*44:02, C*02:02, C*06:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62422

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HXB2 Location Pol(153-170)
Protease(97)-RT(15)
DNA(2541..2594)
Pol Epitope Map
Author Location Pol(153-170)
Epitope LNFPISPIETVPVKLKPG Epitope Alignment
LNFPISPIETVPVKLKPG epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62401

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HXB2 Location Pol(257-274)
RT(102-119)
DNA(2853..2906)
Pol Epitope Map
Author Location Pol(257-274)
Epitope KKKSVTVLDVGDAYFSVP Epitope Alignment
KKKSVTVLDVGDAYFSVP epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00870: A*11:01, A*24:02, B*35:01, B*55:01, C*03:03, C*04:01; 00937: A*03:01, A*30:01, B*35:01, B*52:01, C*04:01, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62388

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HXB2 Location Pol(273-290)
RT(118-135)
DNA(2901..2954)
Pol Epitope Map
Author Location Pol(273-290)
Epitope VPLDKDFRKYTAFTIPSI Epitope Alignment
VPLDKDFRKYTAFTIPSI epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00773: A*02:01, A*11:01, B*18:01, B*51:01, C*01:02, C*02:02; 00834: A*02:05, A*30:02, B*51:01, B*58:01, C*04:01, C*16:01; 01095: A*03:01, A*31:01, B*40:01, B*44:02, C*03:04, C*05:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62380

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HXB2 Location Pol(281-298)
RT(126-143)
DNA(2925..2978)
Pol Epitope Map
Author Location Pol(281-298)
Epitope KYTAFTIPSINNETPGIR Epitope Alignment
KYTAFTIPSINNETPGIR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00728: A*02:01, A*03:01, B*07:02, B*40:02, C*02:02, C*07:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62372

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HXB2 Location Pol(289-306)
RT(134-151)
DNA(2949..3002)
Pol Epitope Map
Author Location Pol(289-306)
Epitope SINNETPGIRYQYNVLPQ Epitope Alignment
SINNETPGIRYQYNVLPQ epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62397

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HXB2 Location Pol(297-314)
RT(142-159)
DNA(2973..3026)
Pol Epitope Map
Author Location Pol(297-314)
Epitope IRYQYNVLPQGWKGSPAI Epitope Alignment
IRYQYNVLPQGWKGSPAI epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00870: A*11:01, A*24:02, B*35:01, B*55:01, C*03:03, C*04:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62360

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HXB2 Location Pol(313-330)
RT(158-175)
DNA(3021..3074)
Pol Epitope Map
Author Location Pol(313-330)
Epitope AIFQSSMTKILEPFRKQN Epitope Alignment
AIFQSSMTKILEPFRKQN epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00674: A*02:01, A*03:01, B*07, B*40:01, C*03:04, C*07:02; 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01; 01095: A*03:01, A*31:01, B*40:01, B*44:02, C*03:04, C*05:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62399

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HXB2 Location Pol(321-338)
RT(166-183)
DNA(3045..3098)
Pol Epitope Map
Author Location Pol(321-338)
Epitope KILEPFRKQNPDIVIYQY Epitope Alignment
KILEPFRKQNPDIVIYQY epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00870: A*11:01, A*24:02, B*35:01, B*55:01, C*03:03, C*04:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62335

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HXB2 Location Pol(329-346)
RT(174-191)
DNA(3069..3122)
Pol Epitope Map
Author Location Pol(329-346)
Epitope QNPDIVIYQYMDDLYVGS Epitope Alignment
QNPDIVIYQYMDDLYVGS epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01; 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62415

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HXB2 Location Pol(353-370)
RT(198-215)
DNA(3141..3194)
Pol Epitope Map
Author Location Pol(353-370)
Epitope HRTKIEELRQHLLRWGFT Epitope Alignment
HRTKIEELRQHLLRWGFT epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01; 01095: A*03:01, A*31:01, B*40:01, B*44:02, C*03:04, C*05:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62418

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HXB2 Location Pol(441-458)
RT(286-303)
DNA(3405..3458)
Pol Epitope Map
Author Location Pol(441-458)
Epitope TKALTEVIPLTEEAELEL Epitope Alignment
TKALTEVIPLTEEAELEL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62382

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HXB2 Location Pol(481-498)
RT(326-343)
DNA(3525..3578)
Pol Epitope Map
Author Location Pol(481-498)
Epitope IAEIQKQGQGQWTYQIYQ Epitope Alignment
IAEIQKQGQGQWTYQIYQ epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00749: A*03:01, A*30:02, B*15:03, B*40:01, C*02:10, C*03:04
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62361

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HXB2 Location Pol(489-506)
RT(334-351)
DNA(3549..3602)
Pol Epitope Map
Author Location Pol(489-506)
Epitope QGQWTYQIYQEPFKNLKT Epitope Alignment
QGQWTYQIYQEPFKNLKT epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00674: A*02:01, A*03:01, B*07, B*40:01, C*03:04, C*07:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62338

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HXB2 Location Pol(505-522)
RT(350-367)
DNA(3597..3650)
Pol Epitope Map
Author Location Pol(505-522)
Epitope KTGKYARMRGAHTNDVKQ Epitope Alignment
KTGKYARMRGAHTNDVKQ epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62363

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HXB2 Location Pol(521-538)
RT(366-383)
DNA(3645..3698)
Pol Epitope Map
Author Location Pol(521-538)
Epitope KQLTEAVQKIATESIVIW Epitope Alignment
KQLTEAVQKIATESIVIW epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03; 00926: A*02:02, A*02:05, B*39:10, B*45:01, C*12:03, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62419

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HXB2 Location Pol(609-626)
RT(454-471)
DNA(3909..3962)
Pol Epitope Map
Author Location Pol(609-626)
Epitope KAGYVTDRGRQKVVSLTD Epitope Alignment
KAGYVTDRGRQKVVSLTD epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62425

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HXB2 Location Pol(681-698)
RT(526-543)
DNA(4125..4178)
Pol Epitope Map
Author Location Pol(681-698)
Epitope IKKEKVYLAWVPAHKGIG Epitope Alignment
IKKEKVYLAWVPAHKGIG epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00937: A*03:01, A*30:01, B*35:01, B*52:01, C*04:01, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62414

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HXB2 Location Pol(705-722)
RT(550)-Integrase(7)
DNA(4197..4250)
Pol Epitope Map
Author Location Pol(705-722)
Epitope KLVSAGIRKVLFLDGIDK Epitope Alignment
KLVSAGIRKVLFLDGIDK epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62437

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HXB2 Location Pol(802-818)
Integrase(87-103)
DNA(4488..4538)
Pol Epitope Map
Author Location Pol(802-818)
Epitope EVIPAETGQETAYFILK Epitope Alignment
EVIPAETGQETAYFILK epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 01014: A*23:01, A*74:01, B*07:02, B*41:02, C*15:05, C*17:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62438

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HXB2 Location Pol(822-838)
Integrase(107-123)
DNA(4548..4598)
Pol Epitope Map
Author Location Pol(822-838)
Epitope RWPVTTVHTDNGSNFTS Epitope Alignment
RWPVTTVHTDNGSNFTS epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 01014: A*23:01, A*74:01, B*07:02, B*41:02, C*15:05, C*17:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62355

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HXB2 Location Pol(825-842)
Integrase(110-127)
DNA(4557..4610)
Pol Epitope Map
Author Location Pol(825-842)
Epitope VKTIHTDNGSNFTSTTVK Epitope Alignment
VKTIHTDNGSNFTSTTVK epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00673: A*24:02, A*30:02, B*15:17, B*18:01, C*05:01, C*07:01; 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62434

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HXB2 Location Pol(889-906)
Integrase(174-191)
DNA(4749..4802)
Pol Epitope Map
Author Location Pol(889-906)
Epitope TAVQMAVFIHNFKRKGGI Epitope Alignment
TAVQMAVFIHNFKRKGGI epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 01014: A*23:01, A*74:01, B*07:02, B*41:02, C*15:05, C*17:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62385

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HXB2 Location Pol(897-914)
Integrase(182-199)
DNA(4773..4826)
Pol Epitope Map
Author Location Pol(897-914)
Epitope IHNFKRKGGIGGYSAGER Epitope Alignment
IHNFKRKGGIGGYSAGER epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00749: A*03:01, A*30:02, B*15:03, B*40:01, C*02:10, C*03:04
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62378

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HXB2 Location Pol(905-922)
Integrase(190-207)
DNA(4797..4850)
Pol Epitope Map
Author Location Pol(905-922)
Epitope GIGGYSAGERIVDIIATD Epitope Alignment
GIGGYSAGERIVDIIATD epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00728: A*02:01, A*03:01, B*07:02, B*40:02, C*02:02, C*07:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62346

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HXB2 Location Pol(921-938)
Integrase(206-223)
DNA(4845..4898)
Pol Epitope Map
Author Location Pol(921-938)
Epitope TDIQTKELQKQITKIQNF Epitope Alignment
TDIQTKELQKQITKIQNF epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00250: A*01:01, A*31:01, B*27:03, B*44:02, C*02:02, C*06:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62384

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HXB2 Location Pol(929-946)
Integrase(214-231)
DNA(4869..4922)
Pol Epitope Map
Author Location Vif(929-946)
Epitope QKQITKIQNFRVYYRDSR Epitope Alignment
QKQITKIQNFRVYYRDSR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00749: A*03:01, A*30:02, B*15:03, B*40:01, C*02:10, C*03:04; 00834: A*02:05, A*30:02, B*51:01, B*58:01, C*04:01, C*16:01; 00848: A*01:01, A*30:02, B*08:01, B*18:01, C*05:01, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62353

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HXB2 Location Pol(953-970)
Integrase(238-255)
DNA(4941..4994)
Pol Epitope Map
Author Location Pol(953-970)
Epitope PAKLLWKGEGAVVIQDNS Epitope Alignment
PAKLLWKGEGAVVIQDNS epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00546: A*02:01, A*32:01, B*15:01, B*40:01, C*02:02, C*03:04
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62383

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HXB2 Location Pol(969-986)
Integrase(254-271)
DNA(4989..5042)
Pol Epitope Map
Author Location Pol(969-986)
Epitope NSDIKVVPRRKAKIIRDY Epitope Alignment
NSDIKVVPRRKAKIIRDY epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00749: A*03:01, A*30:02, B*15:03, B*40:01, C*02:10, C*03:04; 00929: A*01:01, A*74, B*15, B*81, C*02:10, C*18:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62403

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HXB2 Location Vif(25-42)
DNA(5113..5166)
Vif Epitope Map
Author Location Vif(25-42)
Epitope VKHHMYISRKAKGWFYRH Epitope Alignment
VKHHMYISRKAKGWFYRH epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00926: A*02:02, A*02:05, B*39:10, B*45:01, C*12:03, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62387

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HXB2 Location Vif(33-50)
DNA(5137..5190)
Vif Epitope Map
Author Location Vif(33-50)
Epitope RKAKGWFYRHHYESTHPR Epitope Alignment
RKAKGWFYRHHYESTHPR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00749: A*03:01, A*30:02, B*15:03, B*40:01, C*02:10, C*03:04
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62326

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HXB2 Location Vif(73-90)
DNA(5257..5310)
Vif Epitope Map
Author Location Vif(73-90)
Epitope HTGERDWHLGQGVSIEWR Epitope Alignment
HTGERDWHLGQGVSIEWR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62402

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HXB2 Location Vif(89-106)
DNA(5305..5358)
Vif Epitope Map
Author Location Vif(89-106)
Epitope WRKKRYSTQVDPDLADQL Epitope Alignment
WRKKRYSTQVDPDLADQL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00926: A*02:02, A*02:05, B*39:10, B*45:01, C*12:03, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62323

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HXB2 Location Vif(153-170)
DNA(5497..5550)
Vif Epitope Map
Author Location Vif(153-170)
Epitope LITPKKIKPPLPSVTKLT Epitope Alignment
LITPKKIKPPLPSVTKLT epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62331

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HXB2 Location Vpr(9-26)
DNA(5583..5636)
Vpr Epitope Map
Author Location Vpr(9-26)
Epitope GPQREPYNEWTLELLEEL Epitope Alignment
GPQREPYNEWTLELLEEL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01; 00674: A*02:01, A*03:01, B*07, B*40:01, C*03:04, C*07:02; 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03; 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62440

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HXB2 Location Vpr(17-34)
DNA(5607..5660)
Vpr Epitope Map
Author Location Vpr(17-34)
Epitope EWTLELLEELKNEAVRHF Epitope Alignment
EWTLELLEELKNEAVRHF epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 20296: A*29:02, A*31:01, B*08:01, B*44:03, C*07:01, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62389

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HXB2 Location Vpr(25-42)
DNA(5631..5684)
Vpr Epitope Map
Author Location Vpr(25-42)
Epitope ELKNEAVRHFPRIWLHGL Epitope Alignment
ELKNEAVRHFPRIWLHGL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03; 00773: A*02:01, A*11:01, B*18:01, B*51:01, C*01:02, C*02:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62410

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HXB2 Location Vpr(31-50)
DNA(5649..5708)
Vpr Epitope Map
Author Location Vpr(31-50)
Epitope VRHFPRPWLHGLGQYIYETY Epitope Alignment
VRHFPRPWLHGLGQYIYETY epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62394

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HXB2 Location Vpr(57-74)
DNA(5727..5780)
Vpr Epitope Map
Author Location Vpr(57-74)
Epitope VEAIIRILQQLLFIHFRI Epitope Alignment
VEAIIRILQQLLFIHFRI epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00834: A*02:05, A*30:02, B*51:01, B*58:01, C*04:01, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62343

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HXB2 Location Tat(33-50)
DNA(5927..5980)
Tat Epitope Map
Author Location Tat(33-50)
Epitope HCQVCFITKGLGISYGRK Epitope Alignment
HCQVCFITKGLGISYGRK epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00250: A*01:01, A*31:01, B*27:03, B*44:02, C*02:02, C*06:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62426

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HXB2 Location Tat(41-58)
DNA(5951..6004)
Tat Epitope Map
Author Location Tat(41-58)
Epitope KGLGISYGRKKRRQRRRA Epitope Alignment
KGLGISYGRKKRRQRRRA epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00937: A*03:01, A*30:01, B*35:01, B*52:01, C*04:01, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62400

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HXB2 Location Tat(49-66)
DNA(5975..6028)
Tat Epitope Map
Author Location Tat(49-66)
Epitope RKKRRQRRRAPQDSQTHQ Epitope Alignment
RKKRRQRRRAPQDSQTHQ epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00870: A*11:01, A*24:02, B*35:01, B*55:01, C*03:03, C*04:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62430

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HXB2 Location Tat(65-82)
DNA(6023..6045,8379..8409)
Tat Epitope Map
Author Location Tat(65-82)
Epitope HQVSLSKQPASQPRGDPT Epitope Alignment
HQVSLSKQPASQPRGDPT epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00941:
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62428

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HXB2 Location Tat(89-101)
DNA(8428..8466)
Tat Epitope Map
Author Location Tat(89-101)
Epitope KKVERETETDPVD Epitope Alignment
KKVERETETDPVD epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00941:
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62409

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HXB2 Location Rev(61-80)
DNA(8483..8542)
Rev Epitope Map
Author Location Rev(61-80)
Epitope HIYLGRSAEPVPLHLPPLER Epitope Alignment
HIYLGRSAEPVPLHLPPLER epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00929: A*01:01, A*74, B*15, B*81, C*02:10, C*18:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62406

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HXB2 Location Rev(65-82)
DNA(8495..8548)
Rev Epitope Map
Author Location Rev(65-82)
Epitope GRPAEPVPLQLPPLERLT Epitope Alignment
GRPAEPVPLQLPPLERLT epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62371

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HXB2 Location Rev(105-116)
DNA(8615..8650)
Rev Epitope Map
Author Location Rev(105-116)
Epitope ESPAVLESGTKE Epitope Alignment
ESPAVLESGTKE epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62370

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HXB2 Location Vpu(25-42)
DNA(6134..6187)
Vpu Epitope Map
Author Location Vpu(25-42)
Epitope IVFIEYRKILRQRKIDRL Epitope Alignment
IVFIEYRKILRQRKIDRL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62368

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HXB2 Location gp160(26-43)
gp120(26-43)
DNA(6300..6353)
gp160 Epitope Map
Author Location Env(26-43)
Epitope MICSAAEKLWVTVYYGVP Epitope Alignment
MICSAAEKLWVTVYYGVP epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62369

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HXB2 Location gp160(42-59)
gp120(42-59)
DNA(6348..6401)
gp160 Epitope Map
Author Location Env(42-59)
Epitope VPVWKEATTTLFCASDAK Epitope Alignment
VPVWKEATTTLFCASDAK epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62348

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HXB2 Location gp160(55-72)
gp120(55-72)
DNA(6387..6440)
gp160 Epitope Map
Author Location Env(55-72)
Epitope ASDAKAYETEVHNVWATH Epitope Alignment
ASDAKAYETEVHNVWATH epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00250: A*01:01, A*31:01, B*27:03, B*44:02, C*02:02, C*06:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62330

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HXB2 Location gp160(74-91)
gp120(74-91)
DNA(6444..6497)
gp160 Epitope Map
Author Location Env(74-91)
Epitope CVPTDPNPQEVVLENVTE Epitope Alignment
CVPTDPNPQEVVLENVTE epitope logo
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01
Experimental methods  
Keywords optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62366

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HXB2 Location gp160(90-107)
gp120(90-107)
DNA(6492..6545)
gp160 Epitope Map
Author Location Env(90-107)
Epitope TENFNMWKNNMVEQMHED Epitope Alignment
TENFNMWKNNMVEQMHED epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62365

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HXB2 Location gp160(197-214)
gp120(197-214)
DNA(6813..6866)
gp160 Epitope Map
Author Location Env(197-214)
Epitope NTSVITQACPKVSFEPIP Epitope Alignment
NTSVITQACPKVSFEPIP epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62386

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HXB2 Location gp160(285-302)
gp120(285-302)
DNA(7077..7130)
gp160 Epitope Map
Author Location Env(285-302)
Epitope IVQLNESVEINCTRPNNN Epitope Alignment
IVQLNESVEINCTRPNNN epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00749: A*03:01, A*30:02, B*15:03, B*40:01, C*02:10, C*03:04
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62374

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HXB2 Location gp160(339-355)
gp120(339-355)
DNA(7239..7289)
gp160 Epitope Map
Author Location Env(339-355)
Epitope NNTLKHIVEKLRKQYGS Epitope Alignment
NNTLKHIVEKLRKQYGS epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62367

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HXB2 Location gp160(359-376)
gp120(359-376)
DNA(7299..7352)
gp160 Epitope Map
Author Location Env(359-376)
Epitope IVFNQSSGGDPEIVMHSF Epitope Alignment
IVFNQSSGGDPEIVMHSF epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62376

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HXB2 Location gp160(423-439)
gp120(423-439)
DNA(7491..7541)
gp160 Epitope Map
Author Location Env(423-439)
Epitope IINRWQEVGKAMYAPPI Epitope Alignment
IINRWQEVGKAMYAPPI epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62436

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HXB2 Location gp160(501-518)
gp120(501)-gp41(7)
DNA(7725..7778)
gp160 Epitope Map
Author Location Env(501-518)
Epitope AKRRVVQREKRAVGIGAM Epitope Alignment
AKRRVVQREKRAVGIGAM epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 01014: A*23:01, A*74:01, B*07:02, B*41:02, C*15:05, C*17:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62431

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HXB2 Location gp160(725-742)
gp41(214-231)
DNA(8397..8450)
gp160 Epitope Map
Author Location Env(725-742)
Epitope RGPDRPEGIEEEGGERDR Epitope Alignment
RGPDRPEGIEEEGGERDR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00941:
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62407

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HXB2 Location gp160(759-775)
gp41(248-264)
DNA(8499..8549)
gp160 Epitope Map
Author Location Env(759-775)
Epitope DLRNLCLFSYHRLRDLL Epitope Alignment
DLRNLCLFSYHRLRDLL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00929: A*01:01, A*74, B*15, B*81, C*02:10, C*18:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62340

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HXB2 Location gp160(765-782)
gp41(254-271)
DNA(8517..8570)
gp160 Epitope Map
Author Location Env(765-782)
Epitope LFSYHRLRDLLLIVTRIV Epitope Alignment
LFSYHRLRDLLLIVTRIV epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00250: A*01:01, A*31:01, B*27:03, B*44:02, C*02:02, C*06:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62396

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HXB2 Location gp160(790-807)
gp41(279-296)
DNA(8592..8645)
gp160 Epitope Map
Author Location Env(790-807)
Epitope WEVLKYWWNLLQYWSQEL Epitope Alignment
WEVLKYWWNLLQYWSQEL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00848: A*01:01, A*30:02, B*08:01, B*18:01, C*05:01, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62357

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HXB2 Location gp160(798-815)
gp41(287-304)
DNA(8616..8669)
gp160 Epitope Map
Author Location Env(798-815)
Epitope NLLQYWSQELKNSAVSLL Epitope Alignment
NLLQYWSQELKNSAVSLL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00673: A*24:02, A*30:02, B*15:17, B*18:01, C*05:01, C*07:01; 00879: A*03:01, A*33:01, B*14:02, B*58:02, C*06:02, C*08:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62432

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HXB2 Location gp160(814-831)
gp41(303-320)
DNA(8664..8717)
gp160 Epitope Map
Author Location Env(814-831)
Epitope LLNATAIAVAEGTDRVIE Epitope Alignment
LLNATAIAVAEGTDRVIE epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00941:
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62358

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HXB2 Location gp160(838-855)
gp41(327-344)
DNA(8736..8789)
gp160 Epitope Map
Author Location Env(838-855)
Epitope RAILHIPRRIRQGLERAL Epitope Alignment
RAILHIPRRIRQGLERAL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00674: A*02:01, A*03:01, B*07, B*40:01, C*03:04, C*07:02; 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03; 01014: A*23:01, A*74:01, B*07:02, B*41:02, C*15:05, C*17:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62421

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HXB2 Location gp160(846-856)
gp41(335-345)
DNA(8760..8792)
gp160 Epitope Map
Author Location Env(846-856)
Epitope RIRQGLERALL Epitope Alignment
RIRQGLERALL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62433

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HXB2 Location Nef(9-26)
DNA(8821..8874)
Nef Epitope Map
Author Location Nef(9-26)
Epitope SVVGWPTVRERMRRAEPA Epitope Alignment
SVVGWPTVRERMRRAEPA epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00941:
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62381

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HXB2 Location Nef(17-34)
DNA(8845..8898)
Nef Epitope Map
Author Location Nef(17-34)
Epitope RERMRRAEPAADGVGAVS Epitope Alignment
RERMRRAEPAADGVGAVS epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00728: A*02:01, A*03:01, B*07:02, B*40:02, C*02:02, C*07:02; 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62375

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HXB2 Location Nef(37-53)
DNA(8905..8955)
Nef Epitope Map
Author Location Nef(37-53)
Epitope LERHGAVTSSNTAANNA Epitope Alignment
LERHGAVTSSNTAANNA epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62392

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HXB2 Location Nef(57-74)
DNA(8965..9018)
Nef Epitope Map
Author Location Nef(57-74)
Epitope WLEAQEEEEVGFPVRPQV Epitope Alignment
WLEAQEEEEVGFPVRPQV epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00833: A*02:02, A*74:01, B*15:16, B*82:01, C*03:02, C*14:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62334

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HXB2 Location Nef(65-82)
DNA(8989..9042)
Nef Epitope Map
Author Location Nef(65-82)
Epitope EVGFPVRPQVPLRPMTYK Epitope Alignment
EVGFPVRPQVPLRPMTYK epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00231: A*11:01, A*24:02, B*35, B*35:02, C*04:01; 00674: A*02:01, A*03:01, B*07, B*40:01, C*03:04, C*07:02; 00870: A*11:01, A*24:02, B*35:01, B*55:01, C*03:03, C*04:01; 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01; 01014: A*23:01, A*74:01, B*07:02, B*41:02, C*15:05, C*17:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62354

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HXB2 Location Nef(73-90)
DNA(9013..9066)
Nef Epitope Map
Author Location Nef(73-90)
Epitope QVPLRPMTYKGALDLSHF Epitope Alignment
QVPLRPMTYKGALDLSHF epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00673: A*24:02, A*30:02, B*15:17, B*18:01, C*05:01, C*07:01; 00720: A*01:01, A*02:01, B*07:02, B*18:01, C*07:02, C*12:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62398

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HXB2 Location Nef(81-98)
DNA(9037..9090)
Nef Epitope Map
Author Location Nef(81-98)
Epitope YKGALDLSHFLKEKGGLE Epitope Alignment
YKGALDLSHFLKEKGGLE epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00870: A*11:01, A*24:02, B*35:01, B*55:01, C*03:03, C*04:01; 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01; 00941:
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62359

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HXB2 Location Nef(89-106)
DNA(9061..9114)
Nef Epitope Map
Author Location Nef(89-106)
Epitope HFLKEKGGLEGLIYSQKR Epitope Alignment
HFLKEKGGLEGLIYSQKR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00674: A*02:01, A*03:01, B*07, B*40:01, C*03:04, C*07:02; 00728: A*02:01, A*03:01, B*07:02, B*40:02, C*02:02, C*07:02; 00848: A*01:01, A*30:02, B*08:01, B*18:01, C*05:01, C*07:01; 01014: A*23:01, A*74:01, B*07:02, B*41:02, C*15:05, C*17:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62439

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HXB2 Location Nef(97-114)
DNA(9085..9138)
Nef Epitope Map
Author Location Nef(97-114)
Epitope LEGLIYSQKRQDILDLWV Epitope Alignment
LEGLIYSQKRQDILDLWV epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 10430: A*02:01, A*30:01, B*13:02, B*51:01, C*06:02, C*14:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62416

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HXB2 Location Nef(105-122)
DNA(9109..9162)
Nef Epitope Map
Author Location Nef(105-122)
Epitope KRQDILDLWVYHTQGYFP Epitope Alignment
KRQDILDLWVYHTQGYFP epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01; 00941:
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62429

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HXB2 Location Nef(121-138)
DNA(9157..9210)
Nef Epitope Map
Author Location Nef(121-138)
Epitope FPDWQNYTPGPGIRYPLT Epitope Alignment
FPDWQNYTPGPGIRYPLT epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00941:
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62423

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HXB2 Location Nef(129-146)
DNA(9181..9234)
Nef Epitope Map
Author Location Nef(129-146)
Epitope PGPGIRYPLTFGWCFKLV Epitope Alignment
PGPGIRYPLTFGWCFKLV epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00937: A*03:01, A*30:01, B*35:01, B*52:01, C*04:01, C*16:01; 01014: A*23:01, A*74:01, B*07:02, B*41:02, C*15:05, C*17:03
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62408

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HXB2 Location Nef(130-146)
DNA(9184..9234)
Nef Epitope Map
Author Location Nef(130-146)
Epitope GPGTRFPLTFGWCFKLV Epitope Alignment
GPGTRFPLTFGWCFKLV epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62352

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HXB2 Location Nef(137-154)
DNA(9205..9258)
Nef Epitope Map
Author Location Nef(137-154)
Epitope LTFGWCFKLVPVEPEKVE Epitope Alignment
LTFGWCFKLVPVEPEKVE epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00546: A*02:01, A*32:01, B*15:01, B*40:01, C*02:02, C*03:04; 00673: A*24:02, A*30:02, B*15:17, B*18:01, C*05:01, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords optimal epitope, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62412

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HXB2 Location Nef(145-162)
DNA(9229..9282)
Nef Epitope Map
Author Location Nef(145-162)
Epitope LVPVEPEKVEEANEGENN Epitope Alignment
LVPVEPEKVEEANEGENN epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62427

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HXB2 Location Nef(153-170)
DNA(9253..9306)
Nef Epitope Map
Author Location Nef(153-170)
Epitope VEEANEGENNSLLHPMSL Epitope Alignment
VEEANEGENNSLLHPMSL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00941:
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62379

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HXB2 Location Nef(177-194)
DNA(9325..9378)
Nef Epitope Map
Author Location Nef(177-194)
Epitope EREVLVWKFDSRLAFHHM Epitope Alignment
EREVLVWKFDSRLAFHHM epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00728: A*02:01, A*03:01, B*07:02, B*40:02, C*02:02, C*07:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62413

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HXB2 Location Nef(185-202)
DNA(9349..9402)
Nef Epitope Map
Author Location Nef(185-202)
Epitope FDSRLAFHHMARELHPEY Epitope Alignment
FDSRLAFHHMARELHPEY epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00930: A*01:01, A*11:01, B*08:01, B*40:01, C*03:04, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


Displaying record number 62424

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HXB2 Location Nef(193-206)
DNA(9373..9414)
Nef Epitope Map
Author Location Nef(193-206)
Epitope HMARELHPEYYKDC Epitope Alignment
HMARELHPEYYKDC epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA 00937: A*03:01, A*30:01, B*35:01, B*52:01, C*04:01, C*16:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Growth competition assay, Other
Keywords escape, chronic infection, HIV reservoir/latency/provirus

Notes

References

Warren2020 Joanna A. Warren, Shuntai Zhou, Yinyan Xu, Matthew J. Moeser, Daniel R. MacMillan, Olivia Council, Jennifer Kirchherr, Julia M. Sung, Nadia R. Roan, Adaora A. Adimora, Sarah Joseph, JoAnn D. Kuruc, Cynthia L. Gay, David M. Margolis, Nancie Archin, Zabrina L. Brumme, Ronald Swanstrom, and Nilu Goonetilleke. The HIV-1 Latent Reservoir Is Largely Sensitive to Circulating T Cells. eLife, 9, 6 Oct 2020. PubMed ID: 33021198. Show all entries for this paper.


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