HIV molecular immunology database
Found 23 matching records:
Download this epitope record as JSON.
HXB2 Location | Gag(24-32) p17(24-32) DNA(859..885) |
Gag Epitope Map |
---|---|---|
Author Location | p17(24-32) | |
Epitope |
GGKKKYKLK
|
Epitope Alignment
|
Epitope Name | GGK | |
Species (MHC/HLA) | human(B8) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, supervised treatment interruptions (STI), immunodominance, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Gag(71-79) p17(71-79) DNA(1000..1026) |
Gag Epitope Map |
---|---|---|
Author Location | p17(71-79 HXB2) | |
Epitope |
GSEELRSLY
|
Epitope Alignment
|
Epitope Name | GSE | |
Subtype | B | |
Species (MHC/HLA) | human(A1) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, supervised treatment interruptions (STI), immunodominance, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Gag(147-155) p24(15-23) DNA(1228..1254) |
Gag Epitope Map |
---|---|---|
Author Location | p24(147-155) | |
Epitope |
ISPRTLNAW
|
Epitope Alignment
|
Epitope Name | ISP | |
Species (MHC/HLA) | human(B57) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Gag(162-172) p24(30-40) DNA(1273..1305) |
Gag Epitope Map |
---|---|---|
Author Location | p24(162-172) | |
Epitope |
KAFSPEVIPMF
|
Epitope Alignment
|
Epitope Name | KAF | |
Species (MHC/HLA) | human(B57) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Gag(240-249) p24(108-117) DNA(1507..1536) |
Gag Epitope Map |
---|---|---|
Author Location | p24(108-117) | |
Epitope |
TSTLQEQIGW
|
Epitope Alignment
|
Epitope Name | TST | |
Species (MHC/HLA) | human(B57) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Gag(254-262) p24(122-130) DNA(1549..1575) |
Gag Epitope Map |
---|---|---|
Author Location | p24(260-268) | |
Epitope |
PPIPVGDIY
|
Epitope Alignment
|
Epitope Name | PPI | |
Species (MHC/HLA) | human(B35) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Gag(259-267) p24(127-135) DNA(1564..1590) |
Gag Epitope Map |
---|---|---|
Author Location | p24(259-267) | |
Epitope |
GEIYKRWII
|
Epitope Alignment
|
Epitope Name | GEI | |
Species (MHC/HLA) | human(B8) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, supervised treatment interruptions (STI), immunodominance, escape, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Gag(325-333) p24(193-201) DNA(1762..1788) |
Gag Epitope Map |
---|---|---|
Author Location | p24(323-333) | |
Epitope |
NANPDCKTI
|
Epitope Alignment
|
Epitope Name | NAN | |
Species (MHC/HLA) | human(B51) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Gag(329-337) p24(197-205) DNA(1774..1800) |
Gag Epitope Map |
---|---|---|
Author Location | p24(329-337) | |
Epitope |
DCKTILKAL
|
Epitope Alignment
|
Epitope Name | DCK | |
Species (MHC/HLA) | human(B8) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, supervised treatment interruptions (STI), immunodominance, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Gag(349-359) p24(217-227) DNA(1834..1866) |
Gag Epitope Map |
---|---|---|
Author Location | p24(349-359) | |
Epitope |
ACQGVGGPGHK
|
Epitope Alignment
|
Epitope Name | ACQ | |
Species (MHC/HLA) | human(A11) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | SC19: A*11, A*29, B*08, B*44, C*06, C*07:01, DQ2, DQ8, DR3, DR52, DR53, DR7; SC18: A*02, A*11, B*50, B*58, Bw4, Bw6, C*04:01, Cw10, DQ2, DQ8, DR3, DR4, DR52, DR53 | |
Experimental methods | ||
Keywords | HAART, ART, supervised treatment interruptions (STI), immunodominance, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Pol(173-181) RT(18-26) DNA(2601..2627) |
Pol Epitope Map |
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Author Location | RT(185-193) | |
Epitope |
GPKVKQWPL
|
Epitope Alignment
|
Epitope Name | GPK | |
Species (MHC/HLA) | human(B8) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, supervised treatment interruptions (STI), immunodominance, escape, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Pol(283-290) RT(128-135) DNA(2931..2954) |
Pol Epitope Map |
---|---|---|
Author Location | RT(295-302) | |
Epitope |
TAFTIPSI
|
Epitope Alignment
|
Epitope Name | TAF | |
Species (MHC/HLA) | human(B51) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Pol(398-407) RT(243-252) DNA(3276..3305) |
Pol Epitope Map |
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Author Location | RT(410-419) | |
Epitope |
PIVLPEKDSW
|
Epitope Alignment
|
Epitope Name | PIV | |
Species (MHC/HLA) | human(B57) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Pol(464-472) RT(309-317) DNA(3474..3500) |
Pol Epitope Map |
---|---|---|
Author Location | RT(476-484) | |
Epitope |
ILKEPVHGV
|
Epitope Alignment
|
Epitope Name | ILK | |
Species (MHC/HLA) | human(A2) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, supervised treatment interruptions (STI), immunodominance, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | gp160(376-384) gp120(376-384) DNA(7350..7376) |
gp160 Epitope Map |
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Author Location | gp120(376-384) | |
Epitope |
FNCGGEFFY
|
Epitope Alignment
|
Epitope Name | FNC | |
Species (MHC/HLA) | human(B8) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, supervised treatment interruptions (STI), immunodominance, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | gp160(557-565) gp41(46-54) DNA(7893..7919) |
gp160 Epitope Map |
---|---|---|
Author Location | gp41(557-565) | |
Epitope |
RAIEAQQWQ
|
Epitope Alignment
|
Epitope Name | RAI | |
Species (MHC/HLA) | human(B51) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Nef(73-82) DNA(9013..9042) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(73-82) | |
Epitope |
QVPLRPMTYK
|
Epitope Alignment
|
Epitope Name | QVP | |
Species (MHC/HLA) | human(A11) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, supervised treatment interruptions (STI), immunodominance, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Nef(74-81) DNA(9016..9039) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(74-81) | |
Epitope |
VPLRPMTY
|
Epitope Alignment
|
Epitope Name | VPL | |
Species (MHC/HLA) | human(B35) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Nef(84-92) DNA(9046..9072) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(84-92) | |
Epitope |
AVDLSHFLK
|
Epitope Alignment
|
Epitope Name | AVD | |
Species (MHC/HLA) | human(A11) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, supervised treatment interruptions (STI), immunodominance, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Nef(90-97) DNA(9064..9087) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(92-99) | |
Epitope |
FLKEKGGL
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | FLK | |
Species (MHC/HLA) | human(B8) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, supervised treatment interruptions (STI), immunodominance, escape, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Nef(103-127) DNA(9103..9177) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(103-127) | |
Epitope |
SQRRQDILDLWIYHTQGYFPDWQNY
|
Epitope Alignment |
Epitope Name | SQR | |
Species (MHC/HLA) | human(B13) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Nef(116-125) DNA(9142..9171) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(116-125) | |
Epitope |
HTQGYFPDWQ
|
Epitope Alignment
|
Epitope Name | HTQ | |
Species (MHC/HLA) | human(B57) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.
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HXB2 Location | Nef(134-144) DNA(9196..9228) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(134-144) | |
Epitope |
RYPLTFGWCYK
|
Epitope Alignment
|
Epitope Name | RYP | |
Species (MHC/HLA) | human(B18) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | HAART, ART, acute/early infection |
Oxenius2000b A. Oxenius, D. A. Price, P. J. Easterbrook, C. A. O'Callaghan, A. D. Kelleher, J. A. Whelan, G. Sontag, A. K. Sewell, and R. E. Phillips. Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc. Natl. Acad. Sci. U.S.A., 97(7):3382-7, 28 Mar 2000. URL: http://www.pnas.org/cgi/content/full/97/7/3382. PubMed ID: 10737796. Show all entries for this paper.