HIV molecular immunology database
Found 16 matching records:
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HXB2 Location | Gag(22-30) p17(22-30) DNA(853..879) |
Gag Epitope Map |
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Author Location | Gag(22-30) | |
Epitope |
RPGGKKHYM
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | RM9-p17 | |
Subtype | C | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | R045: B*07:02; H034: A*29:02, A*68:02, B*07:02, B*44:03, C*04:01, C*07:02 | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons, optimal epitope, novel epitope |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Gag(148-156) p24(16-24) DNA(1231..1257) |
Gag Epitope Map |
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Author Location | p24 | |
Epitope |
SPRTLNAWV
|
Epitope Alignment
|
Epitope Name | SV9-p24 | |
Subtype | B, C | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Gag(180-188) p24(48-56) DNA(1327..1353) |
Gag Epitope Map |
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Author Location | p24 | |
Epitope |
TPQDLNTML
|
Epitope Alignment
|
Epitope Name | TL9-p24 | |
Subtype | B, C | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Gag(216-224) p24(84-92) DNA(1435..1461) |
Gag Epitope Map |
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Author Location | p24 | |
Epitope |
HPVHAGPIA
|
Epitope Alignment
|
Epitope Name | HA9-p24 | |
Subtype | B, C | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Gag(355-363) p24(223-231) DNA(1852..1878) |
Gag Epitope Map |
---|---|---|
Author Location | p24(355-363) | |
Epitope |
GPSHKARVL
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | GL9-p24 | |
Subtype | C | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Pol(311-319) RT(156-164) DNA(3015..3041) |
Pol Epitope Map |
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Author Location | RT | |
Epitope |
SPAIFQSSM
|
Epitope Alignment
|
Epitope Name | SM9-RT | |
Subtype | B, C | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Pol(743-751) Integrase(28-36) DNA(4311..4337) |
Pol Epitope Map |
---|---|---|
Author Location | Integrase | |
Epitope |
LPPVVAKEI
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | LI9-Int | |
Subtype | B | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Vif(48-57) DNA(5182..5211) |
Vif Epitope Map |
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Author Location | Vif | |
Epitope |
HPRISSEVHI
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | HI10-Vif | |
Subtype | B | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Vpr(34-42) DNA(5658..5684) |
Vpr Epitope Map |
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Author Location | Vpr | |
Epitope |
FPRIWLHSL
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | FL9-Vpr | |
Subtype | B | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Rev(66-75) DNA(8498..8527) |
Rev Epitope Map |
---|---|---|
Author Location | Rev | |
Epitope |
RPAEPVPLQL
|
Epitope Alignment
|
Epitope Name | RL10-Rev | |
Subtype | B, C | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | gp160(298-307) gp120(298-307) DNA(7116..7145) |
gp160 Epitope Map |
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Author Location | Env | |
Epitope |
RPNNNTRKSI
|
Epitope Alignment
|
Epitope Name | RI10-Env | |
Subtype | B, C | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | gp160(843-851) gp41(332-340) DNA(8751..8777) |
gp160 Epitope Map |
---|---|---|
Author Location | Env | |
Epitope |
IPRRIRQGL
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | IL9-Env | |
Subtype | B | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Nef(68-76) DNA(8998..9024) |
Nef Epitope Map |
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Author Location | Nef | |
Epitope |
FPVRPQVPL
|
Epitope Alignment
|
Epitope Name | FL9-Nef | |
Subtype | B, C | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Nef(71-79) DNA(9007..9033) |
Nef Epitope Map |
---|---|---|
Author Location | Nef | |
Epitope |
RPQVPLRPM
|
Epitope Alignment
|
Epitope Name | RM9-Nef | |
Subtype | B, C | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Nef(77-85) DNA(9025..9051) |
Nef Epitope Map |
---|---|---|
Author Location | Nef | |
Epitope |
RPMTYKAAV
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | RV9-Nef | |
Subtype | B | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.
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HXB2 Location | Nef(128-137) DNA(9178..9207) |
Nef Epitope Map |
---|---|---|
Author Location | Nef | |
Epitope |
TPGPGIRYPL
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | TL10-Nef | |
Subtype | B | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Japan, South Africa, United Kingdom, United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | binding affinity, subtype comparisons |
Kloverpris2014 Henrik N. Kløverpris, Emily Adland, Madoka Koyanagi, Anette Stryhn, Mikkel Harndahl, Philippa C. Matthews, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Christian Brander, Masafumi Takiguchi, Søren Buus, and Philip Goulder. HIV Subtype Influences HLA-B*07:02-Associated HIV Disease Outcome. AIDS Res. Hum. Retroviruses, 30(5):468-475, May 2014. PubMed ID: 24010680. Show all entries for this paper.