HIV molecular immunology database

 

Search CTL/CD8+ T-Cell Epitope Database

Found 9 matching records:

Displaying record number 62151

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HXB2 Location Gag(20-29)
p17(20-29)
DNA(847..876)
Gag Epitope Map
Author Location Gag(20-29)
Epitope RLRPGGKKKY Epitope Alignment
RLRPGGKKKY epitope logo
Show epitope variants
Epitope Name RY10
Subtype A1, B, C, D
Species (MHC/HLA) human(A*03:01)
Immunogen HIV-1 infection
Country Uganda
Experimental methods HLA binding, Relative replication capacity assay
Keywords subtype comparisons, escape, HLA associated polymorphism

Notes

References

Kinloch2019 Natalie N. Kinloch, Guinevere Q. Lee, Jonathan M. Carlson, Steven W. Jin, Chanson J. Brumme, Helen Byakwaga, Conrad Muzoora, Mwebesa B. Bwana, Kyle D. Cobarrubias, Peter W. Hunt, Jeff N. Martin, Mary Carrington, David R. Bangsberg, P. Richard Harrigan, Mark A. Brockman, and Zabrina L. Brumme. Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity. J. Virol., 93(1), 1 Jan 2019. PubMed ID: 30305354. Show all entries for this paper.


Displaying record number 62152

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HXB2 Location Gag(20-29)
p17(20-29)
DNA(847..876)
Gag Epitope Map
Author Location Gag(20-29)
Epitope RLRPGGKKKY Epitope Alignment
RLRPGGKKKY epitope logo
Show epitope variants
Epitope Name RY10
Subtype A1, B, C, D
Species (MHC/HLA) human(A*30:01)
Immunogen HIV-1 infection
Country Uganda
Experimental methods HLA binding, Relative replication capacity assay
Keywords subtype comparisons, escape, HLA associated polymorphism

Notes

References

Kinloch2019 Natalie N. Kinloch, Guinevere Q. Lee, Jonathan M. Carlson, Steven W. Jin, Chanson J. Brumme, Helen Byakwaga, Conrad Muzoora, Mwebesa B. Bwana, Kyle D. Cobarrubias, Peter W. Hunt, Jeff N. Martin, Mary Carrington, David R. Bangsberg, P. Richard Harrigan, Mark A. Brockman, and Zabrina L. Brumme. Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity. J. Virol., 93(1), 1 Jan 2019. PubMed ID: 30305354. Show all entries for this paper.


Displaying record number 62153

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HXB2 Location Gag(161-172)
p24(29-40)
DNA(1270..1305)
Gag Epitope Map
Author Location Gag(162-172)
Epitope {D}KAFSPEVIPMF Epitope Alignment
{D}KAFSPEVIPMF epitope logo
Show epitope variants
Epitope Name KF11
Subtype A1, D
Species (MHC/HLA) human(B*57:03)
Immunogen HIV-1 infection
Country Uganda
Experimental methods HLA binding, Relative replication capacity assay
Keywords subtype comparisons, escape, HLA associated polymorphism, chronic infection

Notes

References

Kinloch2019 Natalie N. Kinloch, Guinevere Q. Lee, Jonathan M. Carlson, Steven W. Jin, Chanson J. Brumme, Helen Byakwaga, Conrad Muzoora, Mwebesa B. Bwana, Kyle D. Cobarrubias, Peter W. Hunt, Jeff N. Martin, Mary Carrington, David R. Bangsberg, P. Richard Harrigan, Mark A. Brockman, and Zabrina L. Brumme. Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity. J. Virol., 93(1), 1 Jan 2019. PubMed ID: 30305354. Show all entries for this paper.


Displaying record number 62159

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HXB2 Location Gag(240-249)
p24(108-117)
DNA(1507..1536)
Gag Epitope Map
Author Location Gag(240-249)
Epitope TSTPQEQIGW Epitope Alignment
TSTPQEQIGW epitope logo
Epitope Name TW10
Subtype A1
Species (MHC/HLA) human(B*57:02)
Immunogen HIV-1 infection
Country Uganda
Experimental methods HLA binding, Relative replication capacity assay
Keywords subtype comparisons, escape, HLA associated polymorphism

Notes

References

Kinloch2019 Natalie N. Kinloch, Guinevere Q. Lee, Jonathan M. Carlson, Steven W. Jin, Chanson J. Brumme, Helen Byakwaga, Conrad Muzoora, Mwebesa B. Bwana, Kyle D. Cobarrubias, Peter W. Hunt, Jeff N. Martin, Mary Carrington, David R. Bangsberg, P. Richard Harrigan, Mark A. Brockman, and Zabrina L. Brumme. Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity. J. Virol., 93(1), 1 Jan 2019. PubMed ID: 30305354. Show all entries for this paper.


Displaying record number 62154

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HXB2 Location Gag(240-249)
p24(108-117)
DNA(1507..1536)
Gag Epitope Map
Author Location Gag(240-249)
Epitope TSTLQEQIGW Epitope Alignment
TSTLQEQIGW epitope logo
Show epitope variants
Epitope Name TW10
Subtype D
Species (MHC/HLA) human(B*57:03)
Immunogen HIV-1 infection
Country Uganda
Experimental methods HLA binding, Relative replication capacity assay
Keywords subtype comparisons, escape, HLA associated polymorphism

Notes

References

Kinloch2019 Natalie N. Kinloch, Guinevere Q. Lee, Jonathan M. Carlson, Steven W. Jin, Chanson J. Brumme, Helen Byakwaga, Conrad Muzoora, Mwebesa B. Bwana, Kyle D. Cobarrubias, Peter W. Hunt, Jeff N. Martin, Mary Carrington, David R. Bangsberg, P. Richard Harrigan, Mark A. Brockman, and Zabrina L. Brumme. Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity. J. Virol., 93(1), 1 Jan 2019. PubMed ID: 30305354. Show all entries for this paper.


Displaying record number 62157

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HXB2 Location Gag(433-440)
p2p7p1p6(70-77)
DNA(2086..2109)
Gag Epitope Map
Author Location Gag(433-440)
Epitope FLGKIWPS Epitope Alignment
FLGKIWPS epitope logo
Epitope Name FS8
Subtype A1, D
Species (MHC/HLA) human(A*02:01)
Immunogen HIV-1 infection
Country Uganda
Experimental methods HLA binding, Relative replication capacity assay
Keywords subtype comparisons, escape, HLA associated polymorphism

Notes

References

Kinloch2019 Natalie N. Kinloch, Guinevere Q. Lee, Jonathan M. Carlson, Steven W. Jin, Chanson J. Brumme, Helen Byakwaga, Conrad Muzoora, Mwebesa B. Bwana, Kyle D. Cobarrubias, Peter W. Hunt, Jeff N. Martin, Mary Carrington, David R. Bangsberg, P. Richard Harrigan, Mark A. Brockman, and Zabrina L. Brumme. Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity. J. Virol., 93(1), 1 Jan 2019. PubMed ID: 30305354. Show all entries for this paper.


Displaying record number 62156

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HXB2 Location Pol(850-858)
Integrase(135-143)
DNA(4632..4658)
Pol Epitope Map
Author Location Integrase(135-143)
Epitope IQQEFGIPY Epitope Alignment
IQQEFGIPY epitope logo
Epitope Name IY9
Subtype A1, D
Species (MHC/HLA) human(B*15:03)
Immunogen HIV-1 infection
Country Uganda
Experimental methods HLA binding, Relative replication capacity assay
Keywords subtype comparisons, escape, HLA associated polymorphism

Notes

References

Kinloch2019 Natalie N. Kinloch, Guinevere Q. Lee, Jonathan M. Carlson, Steven W. Jin, Chanson J. Brumme, Helen Byakwaga, Conrad Muzoora, Mwebesa B. Bwana, Kyle D. Cobarrubias, Peter W. Hunt, Jeff N. Martin, Mary Carrington, David R. Bangsberg, P. Richard Harrigan, Mark A. Brockman, and Zabrina L. Brumme. Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity. J. Virol., 93(1), 1 Jan 2019. PubMed ID: 30305354. Show all entries for this paper.


Displaying record number 62155

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HXB2 Location Nef(104-112)
DNA(9106..9132)
Nef Epitope Map
Author Location Nef(104-112)
Epitope RKRQEILDL Epitope Alignment
RKRQEILDL epitope logo
Show epitope variants
Epitope Name RL9
Subtype A1
Species (MHC/HLA) human(B*15:03)
Immunogen HIV-1 infection
Country Uganda
Experimental methods HLA binding, Relative replication capacity assay
Keywords subtype comparisons, escape, HLA associated polymorphism, novel epitope

Notes

References

Kinloch2019 Natalie N. Kinloch, Guinevere Q. Lee, Jonathan M. Carlson, Steven W. Jin, Chanson J. Brumme, Helen Byakwaga, Conrad Muzoora, Mwebesa B. Bwana, Kyle D. Cobarrubias, Peter W. Hunt, Jeff N. Martin, Mary Carrington, David R. Bangsberg, P. Richard Harrigan, Mark A. Brockman, and Zabrina L. Brumme. Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity. J. Virol., 93(1), 1 Jan 2019. PubMed ID: 30305354. Show all entries for this paper.


Displaying record number 62158

Download this epitope record as JSON.

HXB2 Location Nef(104-112)
DNA(9106..9132)
Nef Epitope Map
Author Location Nef(104-112)
Epitope QKRQEILDL Epitope Alignment
QKRQEILDL epitope logo
Epitope Name QL9
Subtype D
Species (MHC/HLA) human(B*15:03)
Immunogen HIV-1 infection
Country Uganda
Experimental methods HLA binding, Relative replication capacity assay
Keywords subtype comparisons, escape, HLA associated polymorphism

Notes

References

Kinloch2019 Natalie N. Kinloch, Guinevere Q. Lee, Jonathan M. Carlson, Steven W. Jin, Chanson J. Brumme, Helen Byakwaga, Conrad Muzoora, Mwebesa B. Bwana, Kyle D. Cobarrubias, Peter W. Hunt, Jeff N. Martin, Mary Carrington, David R. Bangsberg, P. Richard Harrigan, Mark A. Brockman, and Zabrina L. Brumme. Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity. J. Virol., 93(1), 1 Jan 2019. PubMed ID: 30305354. Show all entries for this paper.


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