HIV molecular immunology database
Found 16 matching records:
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HXB2 Location | Gag(77-85) p17(77-85) DNA(1018..1044) |
Gag Epitope Map |
---|---|---|
Author Location | Gag(77-85) | |
Epitope |
SLYNTVVTL
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | SL9 | |
Subtype | B | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | escape, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(77-85) p17(77-85) DNA(1018..1044) |
Gag Epitope Map |
---|---|---|
Author Location | Gag(77-85) | |
Epitope |
SLYNTVATL
|
Epitope Alignment
|
Subtype | B | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | escape, optimal epitope, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
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HXB2 Location | Gag(355-363) p24(223-231) DNA(1852..1878) |
Gag Epitope Map |
---|---|---|
Author Location | Gag(355-363) | |
Epitope |
GPGHKARVL
|
Epitope Alignment
|
Subtype | B | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Flow cytometric T-cell cytokine assay | |
Keywords | escape, optimal epitope, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Gag(355-363) p24(223-231) DNA(1852..1878) |
Gag Epitope Map |
---|---|---|
Author Location | Gag(355-363) | |
Epitope |
GPSHKARVL
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | GL9 | |
Subtype | B | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Flow cytometric T-cell cytokine assay | |
Keywords | escape, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
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HXB2 Location | Pol(724-734) Integrase(9-19) DNA(4254..4286) |
Pol Epitope Map |
---|---|---|
Author Location | Pol(724-734) | |
Epitope |
QEEHERYHSNW
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | QW11 | |
Subtype | B | |
Species (MHC/HLA) | human(B*44:02) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | escape, optimal epitope, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Pol(724-734) Integrase(9-19) DNA(4254..4286) |
Pol Epitope Map |
---|---|---|
Author Location | Pol(724-734) | |
Epitope |
QEEHEKYHSNW
|
Epitope Alignment
|
Subtype | B | |
Species (MHC/HLA) | human(B*44:02) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | escape, optimal epitope, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
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HXB2 Location | Pol(838-847) Integrase(123-132) DNA(4596..4625) |
Pol Epitope Map |
---|---|---|
Author Location | Integrase(128-132) | |
Epitope |
STTVKAACWW
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | SW10 | |
Subtype | B | |
Species (MHC/HLA) | human(B*57:01) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | escape, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Vpr(59-67) DNA(5733..5759) |
Vpr Epitope Map |
---|---|---|
Author Location | Vpr(59-67) | |
Epitope |
ALIRILQQL
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | AL9 | |
Subtype | B | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | escape, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Vpr(59-67) DNA(5733..5759) |
Vpr Epitope Map |
---|---|---|
Author Location | Vpr(59-67) | |
Epitope |
AIIRILQQL
|
Epitope Alignment
|
Subtype | B | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | escape, optimal epitope, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Nef(90-97) DNA(9064..9087) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(90-97) | |
Epitope |
FLKEKGGL
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | FL8 | |
Subtype | A, B | |
Species (MHC/HLA) | human(B*08:01) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | escape, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Nef(105-115) DNA(9109..9141) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(105-115) | |
Epitope |
KRQEILDWVY
|
Epitope Alignment
|
Subtype | B | |
Species (MHC/HLA) | human(C*07:02) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Chromium-release assay, Flow cytometric T-cell cytokine assay | |
Keywords | escape, optimal epitope, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Nef(105-115) DNA(9109..9141) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(105-115) | |
Epitope |
KRQDILDWVY
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | KY11 | |
Subtype | B | |
Species (MHC/HLA) | human(C*07:02) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Chromium-release assay, Flow cytometric T-cell cytokine assay | |
Keywords | escape, optimal epitope, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Nef(128-137) DNA(9178..9207) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(128-137) | |
Epitope |
TPGPGIRYPL
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | TL10 | |
Subtype | B | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Flow cytometric T-cell cytokine assay | |
Keywords | escape, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Nef(128-137) DNA(9178..9207) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(128-137) | |
Epitope |
TPGPGVRYPL
|
Epitope Alignment
|
Epitope Name | TL10 | |
Subtype | B | |
Species (MHC/HLA) | human(B*07:02) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Flow cytometric T-cell cytokine assay | |
Keywords | escape, optimal epitope, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Nef(183-191) DNA(9343..9369) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(183-191) | |
Epitope |
WRFDSRLAF
|
Epitope Alignment
|
Subtype | A, B | |
Species (MHC/HLA) | human(B*15:03) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | escape, optimal epitope, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Nef(183-191) DNA(9343..9369) |
Nef Epitope Map |
---|---|---|
Author Location | Nef(183-191) | |
Epitope |
WKFDSRLAF
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | WF9 | |
Subtype | A, B | |
Species (MHC/HLA) | human(B*15:03) | |
Immunogen | HIV-1 infection | |
Country | Australia | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | escape, HLA associated polymorphism |
Keane2012 Niamh M. Keane, Steven G. Roberts, Coral-Ann M. Almeida, Tanya Krishnan, Abha Chopra, Emma Demaine, Rebecca Laird, Monika Tschochner, Jonathan M. Carlson, Simon Mallal, David Heckerman, Ian James, and Mina John. High-Avidity, High-IFN-gamma-Producing CD8 T-Cell Responses following Immune Selection during HIV-1 Infection. Immunol. Cell Biol., 90(2):224-234, Feb 2012. PubMed ID: 21577229. Show all entries for this paper.