HIV molecular immunology database

 

Search CTL/CD8+ T-Cell Epitope Database

Found 24 matching records:

Displaying record number 62098

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HXB2 Location Gag(20-29)
p17(20-29)
DNA(847..876)
Gag Epitope Map
Author Location p17(20-29 NL4-3)
Epitope RLFPGGKKKY Epitope Alignment
RLFPGGKKKY epitope logo
Epitope Name RY10
Species (MHC/HLA) human(A*03)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62099

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HXB2 Location Gag(28-36)
p17(28-36)
DNA(871..897)
Gag Epitope Map
Author Location p17(28-36 NL4-3)
Epitope KYRLKHIVW Epitope Alignment
KYRLKHIVW epitope logo
Show epitope variants
Epitope Name KW9
Species (MHC/HLA) human(A*24)
Immunogen computer prediction
Patient MHC/HLA 9213: A*01, A*24, B*38, B*44, C*04
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62102

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HXB2 Location Gag(78-85)
p17(78-85)
DNA(1021..1044)
Gag Epitope Map
Author Location p17(78-85 NL4-3)
Epitope LYNTVAVL Epitope Alignment
LYNTVAVL epitope logo
Epitope Name LL8
Species (MHC/HLA) human(C*14)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62101

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HXB2 Location Gag(78-86)
p17(78-86)
DNA(1021..1047)
Gag Epitope Map
Author Location p17(78-86 NL4-3)
Epitope LYNTVAVLY Epitope Alignment
LYNTVAVLY epitope logo
Show epitope variants
Epitope Name LY9
Species (MHC/HLA) human(A*29)
Immunogen computer prediction
Patient MHC/HLA 9213: A*01, A*24, B*38, B*44, C*04
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62100

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HXB2 Location Gag(83-93)
p17(83-93)
DNA(1036..1068)
Gag Epitope Map
Author Location p17(84-91 NL4-3)
Epitope {A}TLYCVHQK{IE} Epitope Alignment
{A}TLYCVHQK{IE} epitope logo
Epitope Name TK8
Species (MHC/HLA) human(A*11)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62104

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HXB2 Location Gag(92-101)
p17(92-101)
DNA(1063..1092)
Gag Epitope Map
Author Location p17(92-101 NL4-3)
Epitope {K}IEIKDTKEAL Epitope Alignment
{K}IEIKDTKEAL epitope logo
Epitope Name IL10
Species (MHC/HLA) human(B*40)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62106

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HXB2 Location Gag(135-147)
p24(3-15)
DNA(1192..1230)
Gag Epitope Map
Author Location p24(135-143 NL4-3)
Epitope VQNLQGQMV{HQAI} Epitope Alignment
VQNLQGQMV{HQAI} epitope logo
Species (MHC/HLA) human(B*13)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62107

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HXB2 Location Gag(144-152)
p24(12-20)
DNA(1219..1245)
Gag Epitope Map
Author Location p24(144-152 NL4-3)
Epitope HQAISPRTL Epitope Alignment
HQAISPRTL epitope logo
Species (MHC/HLA) human(B*15)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62108

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HXB2 Location Gag(145-155)
p24(13-23)
DNA(1222..1254)
Gag Epitope Map
Author Location p24(145-155 NL4-3)
Epitope QAISPRTLNAW Epitope Alignment
QAISPRTLNAW epitope logo
Epitope Name QW11
Species (MHC/HLA) human(A*25)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62105

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HXB2 Location Gag(146-155)
p24(14-23)
DNA(1225..1254)
Gag Epitope Map
Author Location p24(146-155 NL4-3)
Epitope {A}ISPRTLNAW Epitope Alignment
{A}ISPRTLNAW epitope logo
Epitope Name ISW9
Species (MHC/HLA) human(B*57)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62109

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HXB2 Location Gag(162-172)
p24(30-40)
DNA(1273..1305)
Gag Epitope Map
Author Location p24(162-172 NL4-3)
Epitope KAFSPEVIPMF Epitope Alignment
KAFSPEVIPMF epitope logo
Epitope Name KF11
Species (MHC/HLA) human(B*57)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62110

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HXB2 Location Gag(180-188)
p24(48-56)
DNA(1327..1353)
Gag Epitope Map
Author Location p24(180-188 NL4-3)
Epitope TPQDLNTML Epitope Alignment
TPQDLNTML epitope logo
Epitope Name TL9
Species (MHC/HLA) human(B*42)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62111

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HXB2 Location Gag(180-188)
p24(48-56)
DNA(1327..1353)
Gag Epitope Map
Author Location p24(180-188 NL4-3)
Epitope TPQDLNTML Epitope Alignment
TPQDLNTML epitope logo
Epitope Name TL9
Species (MHC/HLA) human(B*81)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62112

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HXB2 Location Gag(180-188)
p24(48-56)
DNA(1327..1353)
Gag Epitope Map
Author Location p24(180-188 NL4-3)
Epitope TPQDLNTML Epitope Alignment
TPQDLNTML epitope logo
Epitope Name TL9
Species (MHC/HLA) human(C*08)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62898

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HXB2 Location Gag(203-212)
p24(71-80)
DNA(1327..1353)
Gag Epitope Map
Author Location Gag(203-212 NL4-3)
Epitope ETINEEAAEW Epitope Alignment
ETINEEAAEW epitope logo
Epitope Name EW10
Species (MHC/HLA) human(A*25)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62113

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HXB2 Location Gag(240-249)
p24(108-117)
DNA(1507..1536)
Gag Epitope Map
Author Location p24(240-249 NL4-3)
Epitope TSTLQEQIGW Epitope Alignment
TSTLQEQIGW epitope logo
Epitope Name TW10
Species (MHC/HLA) human(B*58)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62114

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HXB2 Location Gag(260-268)
p24(128-136)
DNA(1567..1593)
Gag Epitope Map
Author Location p24(260-268 NL4-3)
Epitope EIYKRWIIL Epitope Alignment
EIYKRWIIL epitope logo
Species (MHC/HLA) human(B*08)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62115

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HXB2 Location Gag(263-272)
p24(131-140)
DNA(1576..1605)
Gag Epitope Map
Author Location p24(263-272 NL4-3)
Epitope KRWIILGLNK Epitope Alignment
KRWIILGLNK epitope logo
Epitope Name KK10
Species (MHC/HLA) human(B*08)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62116

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HXB2 Location Gag(275-286)
p24(143-154)
DNA(1612..1635)
Gag Epitope Map
Author Location p24(275-286 NL4-3)
Epitope RMYSPTSI{LDIR} Epitope Alignment
RMYSPTSI{LDIR} epitope logo
Epitope Name RI8
Species (MHC/HLA) human(B*52)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62117

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HXB2 Location Gag(298-306)
p24(166-174)
DNA(1681..1707)
Gag Epitope Map
Author Location p24(298-306 NL4-3)
Epitope DRFYKTLRA Epitope Alignment
DRFYKTLRA epitope logo
Epitope Name DA9
Species (MHC/HLA) human(B*14)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62118

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HXB2 Location Gag(306-316)
p24(174-184)
DNA(1705..1737)
Gag Epitope Map
Author Location p24(306-316 NL4-3)
Epitope AEQASQDVKNW Epitope Alignment
AEQASQDVKNW epitope logo
Species (MHC/HLA) human(B*44)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62119

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HXB2 Location Gag(329-337)
p24(197-205)
DNA(1774..1800)
Gag Epitope Map
Author Location p24(329-337 NL4-3)
Epitope DCKTILKAL Epitope Alignment
DCKTILKAL epitope logo
Species (MHC/HLA) human(B*08)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62120

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HXB2 Location Gag(349-359)
p24(217-227)
DNA(1834..1866)
Gag Epitope Map
Author Location p24(349-359 NL4-3)
Epitope ACQGVGGPGHK Epitope Alignment
ACQGVGGPGHK epitope logo
Species (MHC/HLA) human(A*11)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


Displaying record number 62121

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HXB2 Location Gag(355-363)
p24(223-231)
DNA(1852..1878)
Gag Epitope Map
Author Location p24(355-363 NL4-3)
Epitope GPGHKARVL Epitope Alignment
GPGHKARVL epitope logo
Species (MHC/HLA) human(B*07)
Immunogen computer prediction
Experimental methods Other, Relative replication capacity assay
Keywords vaccine antigen design, viral fitness and reversion

Notes

References

Ferguson2013a Andrew L. Ferguson, Jaclyn K. Mann, Saleha Omarjee, Thumbi Ndung'u, Bruce D Walker, and Arup K. Chakraborty. Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity, 38(3):606-617, 21 Mar 2013. PubMed ID: 23521886. Show all entries for this paper.


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