HIV molecular immunology database

 

Search CTL/CD8+ T-Cell Epitope Database

Found 47 matching records:

Displaying record number 52872

HXB2 Location Gag(18-27)
p17(18-27)
DNA(841..870)
Gag Epitope Map
Author Location Gag
Epitope KIRLRPGGKK Epitope Alignment
KIRLRPGGKK epitope logo
Epitope Name 1272
Subtype multiple
Species (MHC/HLA) human(A11)
Immunogen HIV-1 infection
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52864

HXB2 Location Gag(19-28)
p17(19-28)
DNA(844..873)
Gag Epitope Map
Author Location Gag
Epitope IRLRPGGKKK Epitope Alignment
IRLRPGGKKK epitope logo
Epitope Name 1271
Subtype multiple
Species (MHC/HLA) human(A11, A3, B62)
Immunogen HIV-1 infection
Patient MHC/HLA A11, A3, B14, B51, Cw13, Cw8
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52892

HXB2 Location Gag(20-28)
p17(20-28)
DNA(847..873)
Gag Epitope Map
Author Location Gag
Epitope RLRPGGKKK Epitope Alignment
RLRPGGKKK epitope logo
Epitope Name 1332
Subtype multiple
Species (MHC/HLA) human(A*0301, A3, B42, B62)
Immunogen HIV-1 infection
Patient MHC/HLA A23, A3, B49, B57; A24, A3, B27, B57, Cw13, Cw18; A26, A3, B52, B8
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, immunodominance, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52873

HXB2 Location Gag(74-83)
p17(74-83)
DNA(1009..1038)
Gag Epitope Map
Author Location Gag
Epitope ELRSLYNTVA Epitope Alignment
ELRSLYNTVA epitope logo
Epitope Name 1241
Subtype multiple
Species (MHC/HLA) human(A2)
Immunogen HIV-1 infection
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52875

HXB2 Location Gag(77-86)
p17(77-86)
DNA(1018..1047)
Gag Epitope Map
Author Location Gag
Epitope SLYNTVATLY Epitope Alignment
SLYNTVATLY epitope logo
Epitope Name 1261
Subtype multiple
Species (MHC/HLA) human(A2)
Immunogen HIV-1 infection
Patient MHC/HLA A1, A2, B8, Cw16; A2, A30, B35, B49, Cw4, Cw7; A2, A3, B58, B7, Cw7; A2, A3, B51, B8, Cw1, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52903

HXB2 Location Gag(180-189)
p24(48-57)
DNA(1327..1356)
Gag Epitope Map
Author Location Gag
Epitope TPQDLNTMLN Epitope Alignment
TPQDLNTMLN epitope logo
Epitope Name 1308
Subtype multiple
Species (MHC/HLA) human(B14, B7)
Immunogen HIV-1 infection
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52877

HXB2 Location Gag(180-189)
p24(48-57)
DNA(1327..1356)
Gag Epitope Map
Author Location Gag
Epitope TPQDLNMMLN Epitope Alignment
TPQDLNMMLN epitope logo
Epitope Name 1309
Subtype multiple
Species (MHC/HLA) human(B7)
Immunogen HIV-1 infection
Patient MHC/HLA A24, A3, B38, B7, Cw12/13, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52904

HXB2 Location Gag(183-192)
p24(51-60)
DNA(1336..1365)
Gag Epitope Map
Author Location Gag
Epitope DLNTMLNTVG Epitope Alignment
DLNTMLNTVG epitope logo
Epitope Name 1238
Subtype multiple
Species (MHC/HLA) human(A2, B14)
Immunogen HIV-1 infection
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52884

HXB2 Location Gag(355-364)
p24(223)-p2p7p1p6(1)
DNA(1852..1881)
Gag Epitope Map
Author Location Gag
Epitope GPGHKARVLA Epitope Alignment
GPGHKARVLA epitope logo
Epitope Name 1291
Subtype multiple
Species (MHC/HLA) human(B7)
Immunogen HIV-1 infection
Patient MHC/HLA A24, A3, B38, B7, Cw12/13, Cw7; A1, A3, B7, B8, Cw03, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52894

HXB2 Location Gag(401-410)
p2p7p1p6(38-47)
DNA(1990..2019)
Gag Epitope Map
Author Location Gag
Epitope LARNCRAPRK Epitope Alignment
LARNCRAPRK epitope logo
Epitope Name 1331
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A23, A3, B49, B57; A24, A3, B27, B57, Cw13, Cw18; A26, A3, B52, B8
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52879

HXB2 Location Pol(158-167)
RT(3-12)
DNA(2556..2585)
Pol Epitope Map
Author Location Pol
Epitope SPIETVPVKL Epitope Alignment
SPIETVPVKL epitope logo
Epitope Name 1307
Subtype multiple
Species (MHC/HLA) human(A2, B61, B7, B8)
Immunogen HIV-1 infection
Patient MHC/HLA A24, A3, B38, B7, Cw12/13, Cw7; A29, A30, B44, B8, Cw16, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52869

HXB2 Location Pol(169-178)
RT(14-23)
DNA(2589..2618)
Pol Epitope Map
Author Location Pol
Epitope PGMDGPKVKQ Epitope Alignment
PGMDGPKVKQ epitope logo
Epitope Name 1276
Subtype multiple
Species (MHC/HLA) human(A11)
Immunogen HIV-1 infection
Patient MHC/HLA A11, A68, B42, B45, Cw16, Cw17
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52886

HXB2 Location Pol(173-182)
RT(18-27)
DNA(2601..2630)
Pol Epitope Map
Author Location Pol
Epitope GPKVKQWPLT Epitope Alignment
GPKVKQWPLT epitope logo
Epitope Name 1293
Subtype multiple
Species (MHC/HLA) human(B7, B8)
Immunogen HIV-1 infection
Patient MHC/HLA A24, A3, B38, B7, Cw12/13, Cw7; A29, A30, B44, B8, Cw16, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52866

HXB2 Location Pol(212-221)
RT(57-66)
DNA(2718..2747)
Pol Epitope Map
Author Location Pol
Epitope NTPVFAIKKK Epitope Alignment
NTPVFAIKKK epitope logo
Epitope Name 1274
Subtype multiple
Species (MHC/HLA) human(A11, A68, B8)
Immunogen HIV-1 infection
Patient MHC/HLA A1, A68, B15, B40, Cw03; A25, A68, B18, B27
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, supertype, computational epitope prediction, immunodominance, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52898

HXB2 Location Pol(228-237)
RT(73-82)
DNA(2766..2795)
Pol Epitope Map
Author Location Pol
Epitope KLVDFRELNK Epitope Alignment
KLVDFRELNK epitope logo
Epitope Name 1340
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A23, A3, B49, B57; A2, A3, B51, B8, Cw1, Cw7; A11, A3, B14, B5, Cw8
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52899

HXB2 Location Pol(248-256)
RT(93-101)
DNA(2826..2852)
Pol Epitope Map
Author Location Pol
Epitope GIPHPAGLK Epitope Alignment
GIPHPAGLK epitope logo
Epitope Name 1337
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A23, A3, B49, B57
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52885

HXB2 Location Pol(311-320)
RT(156-165)
DNA(3015..3044)
Pol Epitope Map
Author Location Pol
Epitope SPAIFQSSMT Epitope Alignment
SPAIFQSSMT epitope logo
Epitope Name 1306
Subtype multiple
Species (MHC/HLA) human(B7)
Immunogen HIV-1 infection
Patient MHC/HLA A24, A3, B38, B7, Cw12/13, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52893

HXB2 Location Pol(313-321)
RT(158-166)
DNA(3021..3047)
Pol Epitope Map
Author Location Pol
Epitope AIFQSSMTK Epitope Alignment
AIFQSSMTK epitope logo
Epitope Name 1339
Subtype multiple
Species (MHC/HLA) human(A*0301, A*6801, A11, A3, A33)
Immunogen HIV-1 infection
Patient MHC/HLA A2, A3, B51, B8, Cw1, Cw7; A26, A3, B52, B8; A11, A3, B14, B5, Cw8
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, supertype, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52874

HXB2 Location Pol(369-378)
RT(214-223)
DNA(3189..3218)
Pol Epitope Map
Author Location Pol
Epitope FTTPDKKHQK Epitope Alignment
FTTPDKKHQK epitope logo
Epitope Name 1267
Subtype multiple
Species (MHC/HLA) human(A11, A68)
Immunogen HIV-1 infection
Patient MHC/HLA A11, A68, B42, B45, Cw16, Cw17
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, supertype, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52860

HXB2 Location Pol(370-379)
RT(215-224)
DNA(3192..3221)
Pol Epitope Map
Author Location Pol
Epitope TTPDKKHQKE Epitope Alignment
TTPDKKHQKE epitope logo
Epitope Name 1281
Subtype multiple
Species (MHC/HLA) human(A11)
Immunogen HIV-1 infection
Patient MHC/HLA A11, A68, B42, B45, Cw16, Cw17; A1, A68, B15, B40, Cw03
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, supertype, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52868

HXB2 Location Pol(464-473)
RT(309-318)
DNA(3474..3503)
Pol Epitope Map
Author Location Pol
Epitope ILKEPVHGVY Epitope Alignment
ILKEPVHGVY epitope logo
Epitope Name 1249
Subtype multiple
Species (MHC/HLA) human(A2)
Immunogen HIV-1 infection
Patient MHC/HLA A2, A30, B39; A2, A3, B44, Cw5, Cw7; A2, A30, B35, B49, Cw4, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52878

HXB2 Location Pol(664-673)
RT(509-518)
DNA(4074..4103)
Pol Epitope Map
Author Location Pol
Epitope QPDKSESELV Epitope Alignment
QPDKSESELV epitope logo
Epitope Name 1302
Subtype multiple
Species (MHC/HLA) human(B7)
Immunogen HIV-1 infection
Patient MHC/HLA A24, A3, B38, B7, Cw12/13, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52897

HXB2 Location Pol(675-683)
RT(520-528)
DNA(4107..4133)
Pol Epitope Map
Author Location Pol
Epitope QIIEQLIKK Epitope Alignment
QIIEQLIKK epitope logo
Epitope Name 1336
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A23, A3, B49, B57
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52896

HXB2 Location Pol(777-786)
Integrase(62-71)
DNA(4413..4442)
Pol Epitope Map
Author Location Pol
Epitope QLDCTHLEGK Epitope Alignment
QLDCTHLEGK epitope logo
Epitope Name 1335
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A23, A3, B49, B57; A11, A3, B14, B5, Cw8
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52880

HXB2 Location Pol(804-813)
Integrase(89-98)
DNA(4494..4523)
Pol Epitope Map
Author Location Pol
Epitope IPAETGQETA Epitope Alignment
IPAETGQETA epitope logo
Epitope Name 1294
Subtype multiple
Species (MHC/HLA) human(B7)
Immunogen HIV-1 infection
Patient MHC/HLA A2, A3, B58, B7, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52858

HXB2 Location Pol(886-895)
Integrase(171-180)
DNA(4740..4769)
Pol Epitope Map
Author Location Pol
Epitope HLKTAVQMAV Epitope Alignment
HLKTAVQMAV epitope logo
Epitope Name 1247
Subtype multiple
Species (MHC/HLA) human(A2)
Immunogen HIV-1 infection
Patient MHC/HLA A1, A2, B8, Cw16
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52863

HXB2 Location Pol(894-903)
Integrase(179-188)
DNA(4764..4793)
Pol Epitope Map
Author Location Pol
Epitope AVFIHNFKRK Epitope Alignment
AVFIHNFKRK epitope logo
Epitope Name 1264
Subtype multiple
Species (MHC/HLA) human(A11, A3, A68)
Immunogen HIV-1 infection
Patient MHC/HLA A1, A68, B15, B40, Cw03; A11, A3, B14, B51, Cw13, Cw8; A25, A68, B18, B27
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, supertype, computational epitope prediction, immunodominance, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52895

HXB2 Location Pol(894-903)
Integrase(179-188)
DNA(4764..4793)
Pol Epitope Map
Author Location Pol
Epitope AVFIHNFKRK Epitope Alignment
AVFIHNFKRK epitope logo
Epitope Name 1264
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A23, A3, B49, B57; A24, A3, B27, B57, Cw13, Cw18
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52857

HXB2 Location Vif(101-110)
DNA(5341..5370)
Vif Epitope Map
Author Location Vif
Epitope DLADQLIHLY Epitope Alignment
DLADQLIHLY epitope logo
Epitope Name 1237
Subtype multiple
Species (MHC/HLA) human(A2)
Immunogen HIV-1 infection
Patient MHC/HLA A2, A30, B39; A1, A2, B8, Cw16
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52881

HXB2 Location Vif(160-169)
DNA(5518..5547)
Vif Epitope Map
Author Location Vif
Epitope KPPLPSVKKL Epitope Alignment
KPPLPSVKKL epitope logo
Epitope Name 1296
Subtype multiple
Species (MHC/HLA) human(B7)
Immunogen HIV-1 infection
Patient MHC/HLA A24, A3, B38, B7, Cw12/13, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52891

HXB2 Location Vif(168-176)
DNA(5542..5568)
Vif Epitope Map
Author Location Vif
Epitope KLTEDRWNK Epitope Alignment
KLTEDRWNK epitope logo
Epitope Name 1344
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A24, A3, B27, B57, Cw13, Cw18
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52901

HXB2 Location Tat(20-28)
DNA(5888..5914)
Tat Epitope Map
Author Location Tat
Epitope TACNNCYCK Epitope Alignment
TACNNCYCK epitope logo
Epitope Name 1342
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A23, A3, B49, B57
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52862

HXB2 Location Tat(20-29)
DNA(5888..5917)
Tat Epitope Map
Author Location Tat
Epitope TACNNCYCKK Epitope Alignment
TACNNCYCKK epitope logo
Epitope Name 1279
Subtype multiple
Species (MHC/HLA) human(A68)
Immunogen HIV-1 infection
Patient MHC/HLA A1, A68, B15, B40, Cw03
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52900

HXB2 Location Rev(20-28)
DNA(6027..6045,8379..8386)
Rev Epitope Map
Author Location Rev
Epitope KILYQSNPY Epitope Alignment
KILYQSNPY epitope logo
Epitope Name 1341
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A2, A3, B51, B8, Cw1, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52861

HXB2 Location Rev(107-116)
DNA(8621..8650)
Rev Epitope Map
Author Location Rev
Epitope PTVLESGTKE Epitope Alignment
PTVLESGTKE epitope logo
Epitope Name 1277
Subtype multiple
Species (MHC/HLA) human(A68)
Immunogen HIV-1 infection
Patient MHC/HLA A11, A68, B42, B45, Cw16, Cw17
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52882

HXB2 Location Vpu(4-13)
DNA(6071..6100)
Vpu Epitope Map
Author Location Vpu
Epitope LVILAIVALV Epitope Alignment
LVILAIVALV epitope logo
Epitope Name 1300
Subtype multiple
Species (MHC/HLA) human(B7)
Immunogen HIV-1 infection
Patient MHC/HLA A24, A3, B38, B7, Cw12/13, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52856

HXB2 Location gp160(33-42)
gp120(33-42)
DNA(6321..6350)
gp160 Epitope Map
Author Location Env
Epitope NLWVTVYYGV Epitope Alignment
NLWVTVYYGV epitope logo
Epitope Name 1256
Subtype multiple
Species (MHC/HLA) human(A2)
Immunogen HIV-1 infection
Patient MHC/HLA A2, A30, B39
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52865

HXB2 Location gp160(37-46)
gp120(37-46)
DNA(6333..6362)
gp160 Epitope Map
Author Location Env
Epitope TVYYGVPVWK Epitope Alignment
TVYYGVPVWK epitope logo
Epitope Name 1283
Subtype multiple
Species (MHC/HLA) human(A*6801, A11, A2, A3, B18)
Immunogen HIV-1 infection
Patient MHC/HLA A25, A68, B18, B27; A11, A3, B14, B51, Cw13, Cw8
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52859

HXB2 Location gp160(89-98)
gp120(89-98)
DNA(6489..6518)
gp160 Epitope Map
Author Location Env
Epitope VTENFNMWKN Epitope Alignment
VTENFNMWKN epitope logo
Epitope Name 1284
Subtype multiple
Species (MHC/HLA) human(A11, A68 supertype)
Immunogen HIV-1 infection
Patient MHC/HLA A1, A68, B15, B40, Cw03; A11, A3, B14, B51, Cw13, Cw8
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, supertype, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52890

HXB2 Location gp160(110-118)
gp120(110-118)
DNA(6552..6578)
gp160 Epitope Map
Author Location Env
Epitope SLWDQSLKP Epitope Alignment
SLWDQSLKP epitope logo
Epitope Name 1328
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A2, A3, B51, B8, Cw1, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, immunodominance

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52902

HXB2 Location gp160(117-126)
gp120(117-126)
DNA(6573..6602)
gp160 Epitope Map
Author Location Env
Epitope KPCVKLTPLC Epitope Alignment
KPCVKLTPLC epitope logo
Epitope Name 1295
Subtype multiple
Species (MHC/HLA) human(B7)
Immunogen HIV-1 infection
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52888

HXB2 Location gp160(208-216)
gp120(208-216)
DNA(6846..6872)
gp160 Epitope Map
Author Location Env
Epitope VSFEPIPIH Epitope Alignment
VSFEPIPIH epitope logo
Epitope Name 1329
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A23, A3, B49, B57; A24, A3, B27, B57, Cw13, Cw18
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52876

HXB2 Location gp160(252-261)
gp120(252-261)
DNA(6978..7007)
gp160 Epitope Map
Author Location Env
Epitope KPVVSTQLLL Epitope Alignment
KPVVSTQLLL epitope logo
Epitope Name 1298
Subtype multiple
Species (MHC/HLA) human(B7, B8)
Immunogen HIV-1 infection
Patient MHC/HLA A1, A3, B7, B8, Cw03, Cw7; A29, A30, B44, B8, Cw16, Cw7
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52883

HXB2 Location gp160(252-261)
gp120(252-261)
DNA(6978..7007)
gp160 Epitope Map
Author Location Env
Epitope RPVVSTQLLL Epitope Alignment
RPVVSTQLLL epitope logo
Epitope Name 1305
Subtype multiple
Species (MHC/HLA) human(B7, B8)
Immunogen HIV-1 infection
Patient MHC/HLA A29, A30, B44, B8, Cw16, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, supertype, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52889

HXB2 Location gp160(296-305)
gp120(296-305)
DNA(7110..7139)
gp160 Epitope Map
Author Location Env
Epitope CTRPNNNTRK Epitope Alignment
CTRPNNNTRK epitope logo
Epitope Name 1265
Subtype multiple
Species (MHC/HLA) human(A2, A3)
Immunogen HIV-1 infection
Patient MHC/HLA A23, A3, B49, B57
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction, HLA cross-presentation

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52887

HXB2 Location gp160(374-382)
gp120(374-382)
DNA(7344..7370)
gp160 Epitope Map
Author Location Env
Epitope HSFNCGGEF Epitope Alignment
HSFNCGGEF epitope logo
Epitope Name 1325
Subtype multiple
Species (MHC/HLA) human(A3)
Immunogen HIV-1 infection
Patient MHC/HLA A2, A3, B51, B8, Cw1, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


Displaying record number 52867

HXB2 Location gp160(425-434)
gp120(425-434)
DNA(7497..7526)
gp160 Epitope Map
Author Location Env
Epitope NMWQEVGKAM Epitope Alignment
NMWQEVGKAM epitope logo
Epitope Name 1257
Subtype multiple
Species (MHC/HLA) human(A2)
Immunogen HIV-1 infection
Patient MHC/HLA A2, A30, B39; A2, A3, B44, Cw5, Cw7
Country United States
Experimental methods T-cell Elispot
Keywords binding affinity, computational epitope prediction

Notes

References

DeGroot2003 Anne S. De Groot, Bill Jesdale, William Martin, Caitlin Saint Aubin, Hakima Sbai, Andrew Bosma, Judy Lieberman, Gail Skowron, Fadi Mansourati, and Kenneth H. Mayer. Mapping Cross-Clade HIV-1 Vaccine Epitopes Using a Bioinformatics Approach. Vaccine, 21(27-30):4486-4504, 1 Oct 2003. PubMed ID: 14505932. Show all entries for this paper.


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