HIV molecular immunology database

 

Search CTL/CD8+ T-Cell Epitope Database

Found 20 matching records:

Displaying record number 62506

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HXB2 Location Gag(367-377)
p2p7p1p6(4-14)
DNA(1888..1920)
Gag Epitope Map
Author Location Gag(367-377)
Epitope MSQVTNPATIM Epitope Alignment
MSQVTNPATIM epitope logo
Show epitope variants
Epitope Name Gag-MM11
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection, virus
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Other, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62513

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HXB2 Location Gag(367-377)
p2p7p1p6(4-14)
DNA(1888..1920)
Gag Epitope Map
Author Location Gag(367-377)
Epitope MSQVTNSATIM Epitope Alignment
MSQVTNSATIM epitope logo
Show epitope variants
Epitope Name Gag-MM11
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62512

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HXB2 Location Gag(370-377)
p2p7p1p6(7-14)
DNA(1897..1920)
Gag Epitope Map
Author Location Gag(370-377)
Epitope VTNPATIM Epitope Alignment
VTNPATIM epitope logo
Show epitope variants
Epitope Name Gag-VM8
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection, virus
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Other, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62514

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HXB2 Location Gag(370-377)
p2p7p1p6(7-14)
DNA(1897..1920)
Gag Epitope Map
Author Location Gag(370-377)
Epitope VTNSATIM Epitope Alignment
VTNSATIM epitope logo
Show epitope variants
Epitope Name Gag-VM8
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62522

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HXB2 Location Gag(433-441)
p2p7p1p6(70-78)
DNA(2086..2112)
Gag Epitope Map
Author Location Gag(433-441)
Epitope FLGKIWPSH Epitope Alignment
FLGKIWPSH epitope logo
Epitope Name Gag-FH9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection, virus
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Other, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62524

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HXB2 Location Gag(434-441)
p2p7p1p6(71-78)
DNA(2089..2112)
Gag Epitope Map
Author Location Gag(434-441)
Epitope LGKIWPSH Epitope Alignment
LGKIWPSH epitope logo
Epitope Name Gag-LH8
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection, virus
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Other, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62518

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HXB2 Location Pol(271-279)
RT(116-124)
DNA(2895..2921)
Pol Epitope Map
Author Location Pol(271-279)
Epitope FSVPLDKDF Epitope Alignment
FSVPLDKDF epitope logo
Show epitope variants
Epitope Name Pol-FF9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection, virus
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Other, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62523

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HXB2 Location Pol(464-474)
RT(309-319)
DNA(3474..3506)
Pol Epitope Map
Author Location Pol(464-474)
Epitope ILKEPVHGVYY Epitope Alignment
ILKEPVHGVYY epitope logo
Epitope Name Pol-IY11
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection, virus
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Other, T2 stabilization assay
Keywords immunodominance, chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62519

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HXB2 Location Pol(707-715)
RT(552-560)
DNA(4203..4229)
Pol Epitope Map
Author Location Pol(707-715)
Epitope VSAGIRKVL Epitope Alignment
VSAGIRKVL epitope logo
Show epitope variants
Epitope Name Pol-VL9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection, virus
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Other, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62525

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HXB2 Location Pol(790-798)
Integrase(75-83)
DNA(4452..4478)
Pol Epitope Map
Author Location Pol(790-798)
Epitope VAVHVASGY Epitope Alignment
VAVHVASGY epitope logo
Epitope Name Pol-VY9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection, virus
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Other, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62521

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HXB2 Location Vif(61-69)
DNA(5221..5247)
Vif Epitope Map
Author Location Vif(61-69)
Epitope DAKLVITTY Epitope Alignment
DAKLVITTY epitope logo
Epitope Name Vif-DY9
Species (MHC/HLA) human(B*35:01)
Immunogen in vitro stimulation or selection, HIV-1 infection
Patient MHC/HLA KI-1394: A*24:01, A*24:02, B*35:01, B*52:01, C*03:03, C*12:02
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Intracellular cytokine staining
Keywords HLA cross-presentation

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62520

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HXB2 Location Vif(61-69)
DNA(5221..5247)
Vif Epitope Map
Author Location Vif(61-69)
Epitope DAKLVITTY Epitope Alignment
DAKLVITTY epitope logo
Show epitope variants
Epitope Name Vif-DY9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen in vitro stimulation or selection, HIV-1 infection, virus
Patient MHC/HLA KI-1394: A*24:01, A*24:02, B*35:01, B*52:01, C*03:03, C*12:02
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Intracellular cytokine staining, Other, T2 stabilization assay
Keywords HLA cross-presentation, chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62517

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HXB2 Location Tat(39-47)
DNA(5945..5971)
Tat Epitope Map
Author Location Tat(39-47)
Epitope MTKALGISY Epitope Alignment
MTKALGISY epitope logo
Show epitope variants
Epitope Name Tat-MY9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection, virus
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Other, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62515

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HXB2 Location gp160(318-326)
gp120(318-326)
DNA(7176..7202)
gp160 Epitope Map
Author Location Env(318-326)
Epitope VTIGKIGNM Epitope Alignment
VTIGKIGNM epitope logo
Epitope Name Env-VM9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen virus
Country Japan
Experimental methods Other
Keywords protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62527

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HXB2 Location gp160(557-565)
gp41(46-54)
DNA(7893..7919)
gp160 Epitope Map
Author Location Env(557-566)
Epitope RAIEAQQHL Epitope Alignment
RAIEAQQHL epitope logo
Show epitope variants
Epitope Name Env-RL9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen in vitro stimulation or selection, HIV-1 infection, virus
Patient MHC/HLA KI-1407: A*24:02, B*52:01, C*12:02
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, Intracellular cytokine staining, Other, T2 stabilization assay
Keywords immunodominance, variant cross-reactivity, novel epitope, chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62528

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HXB2 Location Nef(82-90)
DNA(9040..9066)
Nef Epitope Map
Author Location Nef(82-90)
Epitope KAAVDLSHF Epitope Alignment
KAAVDLSHF epitope logo
Show epitope variants
Epitope Name Nef-KF9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen virus
Country Japan
Experimental methods Other
Keywords protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62529

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HXB2 Location Nef(82-90)
DNA(9040..9066)
Nef Epitope Map
Author Location Nef(82-90)
Epitope KGALDLSHF Epitope Alignment
KGALDLSHF epitope logo
Show epitope variants
Epitope Name Nef-KF9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62531

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HXB2 Location Nef(194-202)
DNA(9376..9402)
Nef Epitope Map
Author Location Nef(194-202)
Epitope VARELHPEY Epitope Alignment
VARELHPEY epitope logo
Show epitope variants
Epitope Name Nef-VY9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen virus
Country Japan
Experimental methods Other
Keywords immunodominance, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62532

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HXB2 Location Nef(194-202)
DNA(9376..9402)
Nef Epitope Map
Author Location Nef(194-202)
Epitope MARELHPEY Epitope Alignment
MARELHPEY epitope logo
Show epitope variants
Epitope Name Nef-MY9
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen HIV-1 infection
Country Japan
Experimental methods CD8 T-cell Elispot - IFNγ, T2 stabilization assay
Keywords chronic infection, protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


Displaying record number 62516

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HXB2 Location Nef(194-203)
DNA(9376..9405)
Nef Epitope Map
Author Location Nef(194-203)
Epitope VARELHPEYF Epitope Alignment
VARELHPEYF epitope logo
Epitope Name Nef-VF10
Subtype B
Species (MHC/HLA) human(C*12:02)
Immunogen virus
Country Japan
Experimental methods Other
Keywords protective allele

Notes

References

Chikata2019 Takayuki Chikata, Wayne Paes, Tomohiro Akahoshi, Thomas Partridge, Hayato Murakoshi, Hiroyuki Gatanaga, Nicola Ternette, Shinichi Oka, Persephone Borrow, and Masafumi Takiguchi. Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach. J. Virol., 93(17), 1 Sep 2019. PubMed ID: 31217245. Show all entries for this paper.


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