HIV molecular immunology database

 

Search CTL/CD8+ T-Cell Epitope Database

Found 71 matching records:

Displaying record number 61101

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HXB2 Location Gag(24-32)
p17(24-32)
DNA(859..885)
Gag Epitope Map
Author Location p17(24-32)
Epitope GGKKKYQLK Epitope Alignment
GGKKKYQLK epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH470: A*01:01, A*03:01, B*08:01, B*49:01, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61064

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HXB2 Location Gag(37-44)
p17(37-44)
DNA(898..921)
Gag Epitope Map
Author Location p17(37-44)
Epitope ASRELERF Epitope Alignment
ASRELERF epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH077: A*02:05, B*53:01, B*57:01, C*04:01, C*18:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61089

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HXB2 Location Gag(71-79)
p17(71-79)
DNA(1000..1026)
Gag Epitope Map
Author Location p17(71-79)
Epitope GTEELRSLY Epitope Alignment
GTEELRSLY epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH185: A*01:01, A*74:01, B*15:03, B*81:01, C*02:02, C*18:01
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61071

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HXB2 Location Gag(71-79)
p17(71-79)
DNA(1000..1026)
Gag Epitope Map
Author Location p17(71-79)
Epitope GTEELKSLY Epitope Alignment
GTEELKSLY epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH067: A*01:01, A*33:01, B*53:01, B*81:01, C*04:01, C*18:01
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61093

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HXB2 Location Gag(140-157)
p24(8-25)
DNA(1207..1260)
Gag Epitope Map
Author Location p24(8-25)
Epitope GQMVHQPLSPRTLNAWVK Epitope Alignment
GQMVHQPLSPRTLNAWVK epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH256: A*33:01, A*68:01, B*14:01, B*53:01, C*04:01, C*08:02
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61073

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HXB2 Location Gag(141-149)
p24(9-17)
DNA(1210..1236)
Gag Epitope Map
Author Location p24(9-17)
Epitope QMVHQALSP Epitope Alignment
QMVHQALSP epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH042: A*23:01, A*30:02, B*15:03, B*18:01, C*02:02, C*07:04
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61032

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HXB2 Location Gag(143-152)
p24(11-20)
DNA(1216..1245)
Gag Epitope Map
Author Location p24(11-20)
Epitope VHQPMSPRTL Epitope Alignment
VHQPMSPRTL epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP045: A*23:01, A*29:02, B*15:10, B*45:01, C*16:01, C*16:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61043

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HXB2 Location Gag(143-152)
p24(11-20)
DNA(1216..1245)
Gag Epitope Map
Author Location p24(11-20)
Epitope VHQAISPRTL Epitope Alignment
VHQAISPRTL epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP210: A*68:02, B*15:10, C*03:04
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61060

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HXB2 Location Gag(147-155)
p24(15-23)
DNA(1228..1254)
Gag Epitope Map
Author Location p24(15-23)
Epitope ISPRTLNAW Epitope Alignment
ISPRTLNAW epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH058: A*01:01, A*23:01, B*14:02, B*57, C*07:01, C*08:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61090

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HXB2 Location Gag(180-188)
p24(48-56)
DNA(1327..1353)
Gag Epitope Map
Author Location p24(48-56)
Epitope TPQDLNTML Epitope Alignment
TPQDLNTML epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH185: A*01:01, A*74:01, B*15:03, B*81:01, C*02:02, C*18:01
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61080

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HXB2 Location Gag(180-188)
p24(48-56)
DNA(1327..1353)
Gag Epitope Map
Author Location p24(48-56)
Epitope TPQDLNTML Epitope Alignment
TPQDLNTML epitope logo
Epitope Name TL9
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH159: A*23:01, A*68:02, B*18:01, B*81:01, C*07:04, C*18:01; CH185: A*01:01, A*74:01, B*15:03, B*81:01, C*02:02, C*18:01
Country Malawi
Experimental methods CD8 T-cell RecycleSpot - IFNγ
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61048

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HXB2 Location Gag(240-249)
p24(108-117)
DNA(1507..1536)
Gag Epitope Map
Author Location p24(108-117)
Epitope TSTLQEQVAW Epitope Alignment
TSTLQEQVAW epitope logo
Subtype C
Species (MHC/HLA) human(B*58:01)
Immunogen HIV-1 infection
Patient MHC/HLA CAP239: A*01:01, A*29:02, B*42:01, B*58:01, C*06:02, C*07:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61065

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HXB2 Location Gag(240-249)
p24(108-117)
DNA(1507..1536)
Gag Epitope Map
Author Location p24(108-117)
Epitope TSTLQEQVGW Epitope Alignment
TSTLQEQVGW epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH077: A*02:05, B*53:01, B*57:01, C*04:01, C*18:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61091

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HXB2 Location Gag(240-249)
p24(108-117)
DNA(1507..1536)
Gag Epitope Map
Author Location p24(108-117)
Epitope TSTLQEQVAW Epitope Alignment
TSTLQEQVAW epitope logo
Epitope Name TW10
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH198: A*03:01, A*74:01, B*08:01, B*57, C*07:01, C*07:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61061

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HXB2 Location Gag(240-249)
p24(108-117)
DNA(1507..1536)
Gag Epitope Map
Author Location p24(108-117)
Epitope TSTLQEQIGW Epitope Alignment
TSTLQEQIGW epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH058: A*01:01, A*23:01, B*14:02, B*57, C*07:01, C*08:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61066

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HXB2 Location Gag(275-283)
p24(143-151)
DNA(1612..1638)
Gag Epitope Map
Author Location p24(143-151)
Epitope RMYSPTSIL Epitope Alignment
RMYSPTSIL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH077: A*02:05, B*53:01, B*57:01, C*04:01, C*18:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61086

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HXB2 Location Gag(292-300)
p24(160-168)
DNA(1663..1689)
Gag Epitope Map
Author Location p24(160-168)
Epitope PFRDYVDRF Epitope Alignment
PFRDYVDRF epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH164: A*02:01, A*29:01, B*44:03, B*45:01, C*07:01, C*16:01
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61044

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HXB2 Location Gag(296-304)
p24(164-172)
DNA(1675..1701)
Gag Epitope Map
Author Location p24(164-172)
Epitope YVDRFFKTL Epitope Alignment
YVDRFFKTL epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP210: A*68:02, B*15:10, C*03:04
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61094

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HXB2 Location Gag(298-306)
p24(166-174)
DNA(1681..1707)
Gag Epitope Map
Author Location p24(166-174)
Epitope DRFFKTLRA Epitope Alignment
DRFFKTLRA epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH256: A*33:01, A*68:01, B*14:01, B*53:01, C*04:01, C*08:02
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61067

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HXB2 Location Gag(300-308)
p24(168-176)
DNA(1687..1713)
Gag Epitope Map
Author Location p24(168-176)
Epitope FYKTLRAEQ Epitope Alignment
FYKTLRAEQ epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH077: A*02:05, B*53:01, B*57:01, C*04:01, C*18:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61053

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HXB2 Location Gag(395-403)
p2p7p1p6(32-40)
DNA(1972..1998)
Gag Epitope Map
Author Location p7(18-26)
Epitope CGKEGHIAR Epitope Alignment
CGKEGHIAR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH040: A*02:01, A*31:01, B*40:01, B*44:02, C*03:02, C*05:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61083

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HXB2 Location Gag(396-404)
p2p7p1p6(33-41)
DNA(1975..2001)
Gag Epitope Map
Author Location p7(19-27)
Epitope GKEGHIAKN Epitope Alignment
GKEGHIAKN epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH162: A*30:01, A*34:02, B*42:02, B*44:03, C*04:01, C*17:01
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61087

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HXB2 Location Gag(397-407)
p2p7p1p6(34-44)
DNA(1978..2010)
Gag Epitope Map
Author Location p7(20-30)
Epitope KEGHIARNCKA Epitope Alignment
KEGHIARNCKA epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH164: A*02:01, A*29:01, B*44:03, B*45:01, C*07:01, C*16:01
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61054

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HXB2 Location Gag(481-489)
p2p7p1p6(118-126)
DNA(2230..2256)
Gag Epitope Map
Author Location p6(33-41)
Epitope KELYPLASL Epitope Alignment
KELYPLASL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH040: A*02:01, A*31:01, B*40:01, B*44:02, C*03:02, C*05:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61084

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HXB2 Location Pol(90-98)
Protease(34-42)
DNA(2352..2378)
Pol Epitope Map
Author Location Protease(34-42)
Epitope EEMNLTGKW Epitope Alignment
EEMNLTGKW epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH162: A*30:01, A*34:02, B*42:02, B*44:03, C*04:01, C*17:01
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61095

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HXB2 Location Pol(398-406)
RT(243-251)
DNA(3276..3302)
Pol Epitope Map
Author Location RT(243-251)
Epitope PIQLPEKDS Epitope Alignment
PIQLPEKDS epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH256: A*33:01, A*68:01, B*14:01, B*53:01, C*04:01, C*08:02
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61049

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HXB2 Location Pol(399-407)
RT(244-252)
DNA(3279..3305)
Pol Epitope Map
Author Location RT(244-252)
Epitope IVLPEKESW Epitope Alignment
IVLPEKESW epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP239: A*01:01, A*29:02, B*42:01, B*58:01, C*06:02, C*07:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61102

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HXB2 Location Pol(424-432)
RT(269-277)
DNA(3354..3380)
Pol Epitope Map
Author Location RT(269-277)
Epitope QIYPGIKVK Epitope Alignment
QIYPGIKVK epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH470: A*01:01, A*03:01, B*08:01, B*49:01, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61037

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HXB2 Location Pol(781-789)
Integrase(66-74)
DNA(4425..4451)
Pol Epitope Map
Author Location Integrase(66-74)
Epitope THLEGKIIL Epitope Alignment
THLEGKIIL epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP045: A*23:01, A*29:02, B*15:10, B*45:01, C*16:01, C*16:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61103

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HXB2 Location Vif(17-26)
DNA(5089..5118)
Vif Epitope Map
Author Location Vif(17-26)
Epitope RIKTWKSLVK Epitope Alignment
RIKTWKSLVK epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH470: A*01:01, A*03:01, B*08:01, B*49:01, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61045

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HXB2 Location Vif(79-87)
DNA(5275..5301)
Vif Epitope Map
Author Location Vif(79-87)
Epitope WHLGHGVSI Epitope Alignment
WHLGHGVSI epitope logo
Subtype C
Species (MHC/HLA) human(B*15:10)
Immunogen HIV-1 infection
Patient MHC/HLA CAP210: A*68:02, B*15:10, C*03:04
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61038

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HXB2 Location Vif(79-87)
DNA(5275..5301)
Vif Epitope Map
Author Location Vif(79-87)
Epitope WHLGHGVSI Epitope Alignment
WHLGHGVSI epitope logo
Subtype C
Species (MHC/HLA) human(B*15:10)
Immunogen HIV-1 infection
Patient MHC/HLA CAP045: A*23:01, A*29:02, B*15:10, B*45:01, C*16:01, C*16:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61055

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HXB2 Location Vif(119-127)
DNA(5395..5421)
Vif Epitope Map
Author Location Vif(119-127)
Epitope AIRKAILGR Epitope Alignment
AIRKAILGR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH040: A*02:01, A*31:01, B*40:01, B*44:02, C*03:02, C*05:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61050

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HXB2 Location Vpr(33-41)
DNA(5655..5681)
Vpr Epitope Map
Author Location Vpr(33-41)
Epitope HFPRPWLHN Epitope Alignment
HFPRPWLHN epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP239: A*01:01, A*29:02, B*42:01, B*58:01, C*06:02, C*07:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61096

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HXB2 Location Tat(2-11)
DNA(5834..5863)
Tat Epitope Map
Author Location Tat(2-11)
Epitope EPIDPNLEPW Epitope Alignment
EPIDPNLEPW epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH256: A*33:01, A*68:01, B*14:01, B*53:01, C*04:01, C*08:02
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61040

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HXB2 Location Tat(24-32)
DNA(5900..5926)
Tat Epitope Map
Author Location Tat(24-32)
Epitope NCYCKHCSY Epitope Alignment
NCYCKHCSY epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP045: A*23:01, A*29:02, B*15:10, B*45:01, C*16:01, C*16:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61077

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HXB2 Location Tat(38-47)
DNA(5942..5971)
Tat Epitope Map
Author Location Tat(38-47)
Epitope FQKKGLGISY Epitope Alignment
FQKKGLGISY epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH131: A*23:01, A*29:01, B*15:03, B*45:01, C*02:02, C*06:02
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61074

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HXB2 Location Rev(9-17)
DNA(5994..6020)
Rev Epitope Map
Author Location Rev(9-17)
Epitope DETLLQAVR Epitope Alignment
DETLLQAVR epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH042: A*23:01, A*30:02, B*15:03, B*18:01, C*02:02, C*07:04
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61039

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HXB2 Location Rev(52-60)
DNA(8456..8482)
Rev Epitope Map
Author Location Rev(52-60)
Epitope IHSISERIL Epitope Alignment
IHSISERIL epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP045: A*23:01, A*29:02, B*15:10, B*45:01, C*16:01, C*16:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61056

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HXB2 Location Rev(57-65)
DNA(8471..8497)
Rev Epitope Map
Author Location Rev(57-65)
Epitope ERILSTYLE Epitope Alignment
ERILSTYLE epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH040: A*02:01, A*31:01, B*40:01, B*44:02, C*03:02, C*05:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61081

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HXB2 Location Rev(67-75)
DNA(8501..8527)
Rev Epitope Map
Author Location Rev(67-75)
Epitope PTEPVPFQL Epitope Alignment
PTEPVPFQL epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH159: A*23:01, A*68:02, B*18:01, B*81:01, C*07:04, C*18:01
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61062

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HXB2 Location gp160(584-592)
gp41(73-81)
DNA(7974..8000)
gp160 Epitope Map
Author Location gp41(73-81)
Epitope ERYLRDQQL Epitope Alignment
ERYLRDQQL epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH058: A*01:01, A*23:01, B*14:02, B*57, C*07:01, C*08:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61097

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HXB2 Location gp160(606-614)
gp41(95-103)
DNA(8040..8066)
gp160 Epitope Map
Author Location gp41(95-103)
Epitope TAVPWDSSW Epitope Alignment
TAVPWDSSW epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH256: A*33:01, A*68:01, B*14:01, B*53:01, C*04:01, C*08:02
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61075

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HXB2 Location gp160(637-645)
gp41(126-134)
DNA(8133..8159)
gp160 Epitope Map
Author Location gp41(126-134)
Epitope NYTDIIYRL Epitope Alignment
NYTDIIYRL epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH042: A*23:01, A*30:02, B*15:03, B*18:01, C*02:02, C*07:04
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61078

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HXB2 Location gp160(713-721)
gp41(202-210)
DNA(8361..8387)
gp160 Epitope Map
Author Location gp41(202-210)
Epitope SPLSFQTLI Epitope Alignment
SPLSFQTLI epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH131: A*23:01, A*29:01, B*15:03, B*45:01, C*02:02, C*06:02
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61098

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HXB2 Location gp160(742-750)
gp41(231-239)
DNA(8448..8474)
gp160 Epitope Map
Author Location gp41(231-239)
Epitope RNRSIRLVN Epitope Alignment
RNRSIRLVN epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH256: A*33:01, A*68:01, B*14:01, B*53:01, C*04:01, C*08:02
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61057

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HXB2 Location gp160(770-778)
gp41(259-267)
DNA(8532..8558)
gp160 Epitope Map
Author Location gp41(259-267)
Epitope RLRDLLLIV Epitope Alignment
RLRDLLLIV epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH040: A*02:01, A*31:01, B*40:01, B*44:02, C*03:02, C*05:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61099

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HXB2 Location gp160(799-807)
gp41(288-296)
DNA(8619..8645)
gp160 Epitope Map
Author Location gp41(288-296)
Epitope LVQDWGLEL Epitope Alignment
LVQDWGLEL epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH256: A*33:01, A*68:01, B*14:01, B*53:01, C*04:01, C*08:02
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61046

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HXB2 Location gp160(824-832)
gp41(313-321)
DNA(8694..8720)
gp160 Epitope Map
Author Location gp41(313-321)
Epitope EATDRILEL Epitope Alignment
EATDRILEL epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP210: A*68:02, B*15:10, C*03:04
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61068

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HXB2 Location gp160(827-835)
gp41(316-324)
DNA(8703..8729)
gp160 Epitope Map
Author Location gp41(316-324)
Epitope DRVIEELQR Epitope Alignment
DRVIEELQR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH077: A*02:05, B*53:01, B*57:01, C*04:01, C*18:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61058

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HXB2 Location gp160(835-843)
gp41(324-332)
DNA(8727..8753)
gp160 Epitope Map
Author Location gp41(324-332)
Epitope RACRAILHI Epitope Alignment
RACRAILHI epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH040: A*02:01, A*31:01, B*40:01, B*44:02, C*03:02, C*05:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61051

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HXB2 Location gp160(838-846)
gp41(327-335)
DNA(8736..8762)
gp160 Epitope Map
Author Location gp41(327-335)
Epitope RAIYSIPRR Epitope Alignment
RAIYSIPRR epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP239: A*01:01, A*29:02, B*42:01, B*58:01, C*06:02, C*07:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61072

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HXB2 Location gp160(841-849)
gp41(330-338)
DNA(8745..8771)
gp160 Epitope Map
Author Location gp41(330-338)
Epitope RNIPIRIRQ Epitope Alignment
RNIPIRIRQ epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH067: A*01:01, A*33:01, B*53:01, B*81:01, C*04:01, C*18:01
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61041

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HXB2 Location Nef(64-74)
DNA(8986..9018)
Nef Epitope Map
Author Location Nef(64-74)
Epitope EEVGFPVRPQV Epitope Alignment
EEVGFPVRPQV epitope logo
Subtype C
Species (MHC/HLA) human(B*45:01)
Immunogen HIV-1 infection
Patient MHC/HLA CAP045: A*23:01, A*29:02, B*15:10, B*45:01, C*16:01, C*16:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61088

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HXB2 Location Nef(64-74)
DNA(8986..9018)
Nef Epitope Map
Author Location Nef(64-74)
Epitope EEVGFPVRPQV Epitope Alignment
EEVGFPVRPQV epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH164: A*02:01, A*29:01, B*44:03, B*45:01, C*07:01, C*16:01
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61079

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HXB2 Location Nef(64-74)
DNA(8986..9018)
Nef Epitope Map
Author Location Nef(64-74)
Epitope EEVGFPVKPQV Epitope Alignment
EEVGFPVKPQV epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH131: A*23:01, A*29:01, B*15:03, B*45:01, C*02:02, C*06:02
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61047

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HXB2 Location Nef(69-77)
DNA(9001..9027)
Nef Epitope Map
Author Location Nef(69-77)
Epitope PVKPQVPLR Epitope Alignment
PVKPQVPLR epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP210: A*68:02, B*15:10, C*03:04
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61104

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HXB2 Location Nef(74-82)
DNA(9016..9042)
Nef Epitope Map
Author Location Nef(74-82)
Epitope VPLRPMTFK Epitope Alignment
VPLRPMTFK epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH470: A*01:01, A*03:01, B*08:01, B*49:01, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61052

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HXB2 Location Nef(82-90)
DNA(9040..9066)
Nef Epitope Map
Author Location Nef(82-90)
Epitope KAAVDLSFF Epitope Alignment
KAAVDLSFF epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP239: A*01:01, A*29:02, B*42:01, B*58:01, C*06:02, C*07:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61069

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HXB2 Location Nef(82-90)
DNA(9040..9066)
Nef Epitope Map
Author Location Nef(82-90)
Epitope KAALDLSHF Epitope Alignment
KAALDLSHF epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH077: A*02:05, B*53:01, B*57:01, C*04:01, C*18:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61092

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HXB2 Location Nef(82-90)
DNA(9040..9066)
Nef Epitope Map
Author Location Nef(82-90)
Epitope KAAFDLSFF Epitope Alignment
KAAFDLSFF epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH198: A*03:01, A*74:01, B*08:01, B*57, C*07:01, C*07:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61106

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HXB2 Location Nef(105-115)
DNA(9109..9141)
Nef Epitope Map
Author Location Nef(105-115)
Epitope KRREILDLWVY Epitope Alignment
KRREILDLWVY epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH607: A*01:01, A*03:01, B*08:01, B*49:01, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61076

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HXB2 Location Nef(107-115)
DNA(9115..9141)
Nef Epitope Map
Author Location Nef(107-115)
Epitope REILDLWVY Epitope Alignment
REILDLWVY epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH042: A*23:01, A*30:02, B*15:03, B*18:01, C*02:02, C*07:04
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61085

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HXB2 Location Nef(108-116)
DNA(9118..9144)
Nef Epitope Map
Author Location Nef(108-116)
Epitope EILDLWVYH Epitope Alignment
EILDLWVYH epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH162: A*30:01, A*34:02, B*42:02, B*44:03, C*04:01, C*17:01
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61063

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HXB2 Location Nef(116-124)
DNA(9142..9168)
Nef Epitope Map
Author Location Nef(116-124)
Epitope HTQGYFPDW Epitope Alignment
HTQGYFPDW epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH058: A*01:01, A*23:01, B*14:02, B*57, C*07:01, C*08:02
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61042

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HXB2 Location Nef(129-146)
DNA(9181..9234)
Nef Epitope Map
Author Location Nef(129-146)
Epitope PGPGVRYPLTFGWCFKLV Epitope Alignment
PGPGVRYPLTFGWCFKLV epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CAP045: A*23:01, A*29:02, B*15:10, B*45:01, C*16:01, C*16:02
Country South Africa
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61082

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HXB2 Location Nef(178-186)
DNA(9328..9354)
Nef Epitope Map
Author Location Nef(178-186)
Epitope REVLIWKFD Epitope Alignment
REVLIWKFD epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH159: A*23:01, A*68:02, B*18:01, B*81:01, C*07:04, C*18:01
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61059

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HXB2 Location Nef(187-196)
DNA(9355..9384)
Nef Epitope Map
Author Location Nef(187-196)
Epitope SSLAFRHVAR Epitope Alignment
SSLAFRHVAR epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH040: A*02:01, A*31:01, B*40:01, B*44:02, C*03:02, C*05:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61100

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HXB2 Location Nef(188-196)
DNA(9358..9384)
Nef Epitope Map
Author Location Nef(188-196)
Epitope QLAHRHMAR Epitope Alignment
QLAHRHMAR epitope logo
Subtype C
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH256: A*33:01, A*68:01, B*14:01, B*53:01, C*04:01, C*08:02
Country Malawi
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61105

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HXB2 Location Nef(188-198)
DNA(9358..9390)
Nef Epitope Map
Author Location Nef(188-198)
Epitope RLAYQHIAKEK Epitope Alignment
RLAYQHIAKEK epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH470: A*01:01, A*03:01, B*08:01, B*49:01, C*07:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


Displaying record number 61070

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HXB2 Location Nef(194-202)
DNA(9376..9402)
Nef Epitope Map
Author Location Nef(194-202)
Epitope VAREIHPEF Epitope Alignment
VAREIHPEF epitope logo
Subtype B
Species (MHC/HLA) human
Immunogen HIV-1 infection
Patient MHC/HLA CH077: A*02:05, B*53:01, B*57:01, C*04:01, C*18:01
Country United States
Experimental methods CD8 T-cell Elispot - IFNγ, Other
Keywords computational epitope prediction, escape, acute/early infection, mutation acquisition

Notes

References

Barton2016 John P. Barton, Nilu Goonetilleke, Thomas C. Butler, Bruce D. Walker, Andrew J. McMichael, and Arup K. Chakraborty. Relative Rate and Location of Intra-Host HIV Evolution to Evade Cellular Immunity Are Predictable. Nat. Commun., 7:11660, 23 May 2016. PubMed ID: 27212475. Show all entries for this paper.


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