HIV molecular immunology database
Found 13 matching records:
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HXB2 Location | Gag(77-85) p17(77-85) DNA(1018..1044) |
Gag Epitope Map |
---|---|---|
Author Location | p17 | |
Epitope |
SLYNTVATL
|
Epitope Alignment
|
Epitope Name | p17 SL9 | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | supertype, computational epitope prediction |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
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HXB2 Location | Gag(362-370) p24(230)-p2p7p1p6(7) DNA(1873..1899) |
Gag Epitope Map |
---|---|---|
Author Location | Gag(386-) | |
Epitope |
VLAEAMSQV
|
Epitope Alignment
|
Epitope Name | Gag-386 | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | binding affinity, supertype, computational epitope prediction, immunodominance, HLA cross-presentation |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
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HXB2 Location | Pol(132-140) Protease(76-84) DNA(2478..2504) |
Pol Epitope Map |
---|---|---|
Author Location | Pol(163-) | |
Epitope |
LVGPTPVNI
|
Epitope Alignment
|
Epitope Name | Pol-163 | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | binding affinity, supertype, computational epitope prediction, HLA cross-presentation |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
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HXB2 Location | Pol(282-290) RT(127-135) DNA(2928..2954) |
Pol Epitope Map |
---|---|---|
Author Location | Pol(316-) | |
Epitope |
YTAFTIPSI
|
Epitope Alignment
|
Epitope Name | Pol-316 | |
Species (MHC/HLA) | human(A2) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | binding affinity, supertype, computational epitope prediction, HLA cross-presentation |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
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HXB2 Location | Pol(334-342) RT(179-187) DNA(3084..3110) |
Pol Epitope Map |
---|---|---|
Author Location | RT | |
Epitope |
VIYQYMDDL
|
Epitope Alignment
|
Epitope Name | RT VL9 | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | supertype, computational epitope prediction |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
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HXB2 Location | Pol(464-472) RT(309-317) DNA(3474..3500) |
Pol Epitope Map |
---|---|---|
Author Location | RT | |
Epitope |
ILKEPVHGV
|
Epitope Alignment
|
Epitope Name | RT IV9 | |
Species (MHC/HLA) | human(A2) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | binding affinity, supertype, computational epitope prediction, HLA cross-presentation |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
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HXB2 Location | Vpr(59-67) DNA(5733..5759) |
Vpr Epitope Map |
---|---|---|
Author Location | Vpr(58-66 LAI) | |
Epitope |
AIIRILQQL
|
Epitope Alignment
|
Subtype | B | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | ||
Experimental methods | ||
Keywords | optimal epitope, A-list |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
Llano2019 Anuska Llano, Samandhy Cedeño, Sandra Silva Arrieta, and Christian Brander. The 2019 Optimal HIV CTL Epitopes Update: Growing Diversity in Epitope Length and HLA restriction. 2019. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Vpr(59-67) DNA(5733..5759) |
Vpr Epitope Map |
---|---|---|
Author Location | Vpr(59-) | |
Epitope |
AIIRILQQL
|
Epitope Alignment
|
Epitope Name | Vpr-59 | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | binding affinity, supertype, computational epitope prediction, immunodominance, HLA cross-presentation |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Vpr(62-70) DNA(5742..5768) |
Vpr Epitope Map |
---|---|---|
Author Location | Vpr(62-) | |
Epitope |
RILQQLLFI
|
Epitope Alignment
|
Epitope Name | Vpr-62 | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | binding affinity, supertype, computational epitope prediction, HLA cross-presentation |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
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HXB2 Location | gp160(121-129) gp120(121-129) DNA(6585..6611) |
gp160 Epitope Map |
---|---|---|
Author Location | Env(134-) | |
Epitope |
KLTPLCVTL
|
Epitope Alignment
|
Epitope Name | Env-134 | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | binding affinity, supertype, computational epitope prediction, HLA cross-presentation |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
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HXB2 Location | gp160(813-822) gp41(302-311) DNA(8661..8690) |
gp160 Epitope Map |
---|---|---|
Author Location | gp41 | |
Epitope |
SLLNATDIAV
|
Epitope Alignment
|
Epitope Name | gp41 SV10 | |
Species (MHC/HLA) | human(A68) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | binding affinity, supertype, computational epitope prediction, HLA cross-presentation |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
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HXB2 Location | Nef(137-146) DNA(9205..9234) |
Nef Epitope Map |
---|---|---|
Author Location | Nef( 221A) | |
Epitope |
LTFGWCFKLV
|
Epitope Alignment
|
Epitope Name | Nef-221a | |
Species (MHC/HLA) | human(A2) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | binding affinity, supertype, computational epitope prediction, HLA cross-presentation |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.
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HXB2 Location | Nef(190-198) DNA(9364..9390) |
Nef Epitope Map |
---|---|---|
Author Location | Nef | |
Epitope |
AFHHVAREL
|
Epitope Alignment
|
Epitope Name | Nef AL9 | |
Species (MHC/HLA) | human(A*02:01) | |
Immunogen | HIV-1 infection | |
Experimental methods | ||
Keywords | supertype, computational epitope prediction |
Altfeld2001 M. A. Altfeld, B. Livingston, N. Reshamwala, P. T. Nguyen, M. M. Addo, A. Shea, M. Newman, J. Fikes, J. Sidney, P. Wentworth, R. Chesnut, R. L. Eldridge, E. S. Rosenberg, G. K. Robbins, C. Brander, P. E. Sax, S. Boswell, T. Flynn, S. Buchbinder, P. J. Goulder, B. D. Walker, A. Sette, and S. A. Kalams. Identification of novel HLA-A2-restricted human immunodeficiency virus type 1-specific cytotoxic T-lymphocyte epitopes predicted by the HLA-A2 supertype peptide-binding motif. J. Virol., 75(3):1301-11, Feb 2001. URL: http://jvi.asm.org/cgi/content/full/75/3/1301. PubMed ID: 11152503. Show all entries for this paper.