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LOCUS HIVU50815 651 bp DNA linear VRL 09-MAY-1996
DEFINITION Human immunodeficiency virus type 1 GP120 gene, V1 to V5 region,
partial cds
ACCESSION U50815
VERSION U50815.1 GI:1314517
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 651)
Show all sequences for reference 1
AUTHORS Zhu,T., Wang,N., Carr,A., Nam,D.S., Moor-Jankowski,R., Cooper,D.A.
and Ho,D.D.
TITLE Genetic characterization of human immunodeficiency virus type 1 in
blood and genital secretions: evidence for viral
compartmentalization and selection during sexual transmission
JOURNAL J. Virol. 70 (5), 3098-3107 (1996)
PUBMED 8627789
REFERENCE 2 (bases 1 to 651)
Show all sequences for reference 2
AUTHORS Zhu,T., Wang,N., Car,A., Nam,D.S., Moor-Jankowski,R., Cooper,D.A.
and Ho,D.D.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-1996) Tuofu Zhu, The Aaron Diamond AIDS Research
Center for City of New York, 455 First Avenue, 7th Floor, New York,
NY 10016, USA
COMMENT DNA extracted from plasma of a symptomatic male AIDS patient, AD38.
Sequences spanned by primers PE1 and P2 from the gp120 gene were
expanded by PCR amplification. A second round of PCR amplification
expanded V1-V2 sequences (using inner primers P1 and P10) and V3
(using inner primers P5 and PV3). AD38PL10 has been characterized
as non-syncytium inducing (NSI).
FEATURES Location/Qualifiers
source 1..651
/organism="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/strain="AD38PL10"
/db_xref="taxon:11676"
CDS <1..>636
/codon_start="1"
/transl_table="1"
/product="GP120, V1 to V5 region"
/protein_id="AAC54806.1"
/db_xref="GI:1314518"
/translation="VSTQLLLNGSLAEEEIVIRSANFSDNTKSIIVQLKEPVEINCTR
PNNNTIKGIHIGPGRAFYATGQIVGDIRQAHCNISKTKWNNTLQQIVSKLGEQFNKTI
IFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWKLVNGTWNVTDGLNNTEGNITL
PCRIKQIVNMWQEVGKAMYAPPIEGLIRCSSNITGLILTRDGGGNSSVNETF"
BASE COUNT 262 a 99 c 133 g 157 t
ORIGIN
1 gtatcaactc aattgctgtt aaatggcagc ctagcagaag aagagatagt aattagatct
61 gccaatttct cagacaatac taaaagcata atagtacagc tgaaagaacc agtagaaatt
121 aattgtacaa gacccaacaa caatacaata aaaggtatac atataggacc agggagagca
181 ttttatgcaa caggacaaat agtaggagat ataagacaag cacattgtaa tattagtaaa
241 acaaaatgga ataacacttt acaacagata gttagcaaac taggagaaca atttaataaa
301 acaataatct ttaatcaatc ctcaggaggg gacccagaaa ttgtaatgca cagttttaat
361 tgcagagggg aatttttcta ctgtaataca acacaactgt ttaatagtac ttggaaactg
421 gttaatggta cttggaatgt tactgatggg ttaaacaaca cagaaggaaa tatcacactc
481 ccatgcagaa taaaacaaat tgtaaacatg tggcaggaag taggaaaagc aatgtatgct
541 cctcctatcg aaggactaat tagatgttca tcaaatatta cagggctgat attgacaaga
601 gatggtggag ggaacagtag cgtgaatgag acctttagac ctggaggagg a
//
last modified: Tue May 31 10:56 2022