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LOCUS	    MF352900		    2556 bp    RNA     linear	VRL 06-FEB-2018
DEFINITION  HIV-1 isolate 703010505_w233_32 from Malawi envelope glycoprotein
	    (env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
	    and tat protein (tat) genes, partial cds
ACCESSION   MF352900
VERSION     MF352900.1 GI:1338032441
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2556)
            Show all sequences for reference 1
  AUTHORS   Bonsignori,M., Zhou,T., Sheng,Z., Chen,L., Gao,F., Joyce,M.G.,
	    Ozorowski,G., Chuang,G.Y., Schramm,C.A., Wiehe,K., Alam,S.M.,
	    Bradley,T., Gladden,M.A., Hwang,K.K., Iyengar,S., Kumar,A., Lu,X.,
	    Luo,K., Mangiapani,M.C., Parks,R.J., Song,H., Acharya,P.,
	    Bailer,R.T., Cao,A., Druz,A., Georgiev,I.S., Kwon,Y.D.,
	    Louder,M.K., Zhang,B., Zheng,A., Hill,B.J., Kong,R., Soto,C.,
	    Mullikin,J.C., Douek,D.C., Montefiori,D.C., Moody,M.A., Shaw,G.M.,
	    Hahn,B.H., Kelsoe,G., Hraber,P.T., Korber,B.T., Boyd,S.D.,
	    Fire,A.Z., Kepler,T.B., Shapiro,L., Ward,A.B., Mascola,J.R.,
	    Liao,H.X., Kwong,P.D. and Haynes,B.F.
  TITLE     Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a
	    CD4-Mimic Antibody
  JOURNAL   Cell 165 (2), 449-463 (2016)
  PUBMED    26949186
REFERENCE   2 (bases 1 to 2556)
            Show all sequences for reference 2
  AUTHORS   Hraber,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2017) Theoretical Biology and Biophysics, Los
	    Alamos National Laboratory, T6 MS K710 PO Box 1663, Los Alamos, NM
	    87545, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Wagh,K., Kreider,E.F., Li,Y., Barbian,H.J., Learn,G.H., Giorgi,E.,
	    Hraber,P.T., Decker,T.G., Smith,A.G., Gondim,M.V., Gillis,L.,
	    Wandzilak,J., Chuang,G.Y., Rawi,R., Cai,F., Pellegrino,P.,
	    Williams,I., Overbaugh,J., Gao,F., Kwong,P.D., Haynes,B.F.,
	    Shaw,G.M., Borrow,P., Seaman,M.S., Hahn,B.H. and Korber,B.
  TITLE     Completeness of HIV-1 Envelope Glycan Shield at Transmission
	    Determines Neutralization Breadth
  JOURNAL   Cell Rep 25 (4), 893-908 (2018)
  PUBMED    30355496
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sample timepoint 1603 Patient code
	    703010505 Patient sex M Culture method Uncultured Sample tissue
	    Plasma HLA type A*3001/24 A*3002/33 B*4202 B*570301 C*1701/02/03
	    C*1801/02 Risk factor SH ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2556
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="703010505_w233_32"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="2012"
		     /subtype="C"
     gene	     1..2556
		     /gene="env"
     CDS	     1..2556
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AUW61144.1"
		     /translation="MRVRGIQRNYPQWWIWSMLGFWMLMICNGMWVTVYYGVPVWKEA
		     KTTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLENVTENFNMWENDMVDQMHE
		     DVISLWDQSLKPCVKLTPLCVTLNCINATNATASDSSILDGMKNCSFNITTELRDKRE
		     KKNALFYKLDIVQLGGNSSSSQYRLINCNTSVITQACPKVSFDPIPIHYCAPAGYAIL
		     KCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAGGEIIIRSKNITDNSKTI
		     IVHLNESVKIECTRPSNNTRTSIRIGPGQAFYATGKVIGNIREAHCNISESKWDKTLQ
		     RVSKKLKEYFPRKNITFQPSSGGDLEITTHSFNCGGEFFYCNTSSLFNRNSTDMVNST
		     ENNRTITIHCRIKQIINMWQEVGRAMYAPPIAGNITCISNITGLLLTRDGGNNTETSE
		     TVPEIFRPVGGNMKDNWSSELYKYKVVEVKPLGVAPTNARRRVVEREKRAVGMGAVFL
		     GFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHMLKLTVWGIKQLQA
		     RVLALERYLKDQQLLGMWGCSGKLICTTNVYWNSSWSNKTYNDIWDNMTWMQWEREIS
		     NYTDLIYELLEESQNQQEKNEQDLLALDRWNSLWNWFNITNWLWYIKIFIMIVGGLIG
		     LRIIFAVLSLVNRVRQGYSPLSLQTLIPSPRGPDRPGGIEEEGGEQDRNRSTRLVSGF
		     LALVWDDLRSLCLFLYHRLRDFILIAARAGELLGRSSLKGLRRGWEALKYLGSLVQYW
		     GLELKRSAISLLDTLAIAVGEGTDRILEFVLGICRAIRNIPTRIRQGFETALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AUW61143.1"
		     /translation="ESEGDTEELSTMVDMEHVRLLDANDL"
     gene	     <2119..2366
		     /gene="rev"
     CDS	     <2119..2366
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AUW61142.1"
		     /translation="PYPKPEGTRQARRNRRRRWRARQKQINAISERILSACLGRPAEP
		     VPFPLPPIERLHINCSESGGTSGTQQSQGTTERVGSP"
     gene	     <2119..2209
		     /gene="tat"
     CDS	     <2119..2209
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AUW61141.1"
		     /translation="PLSQARGDQTGPEESKKKVESKTETDQRD"
BASE COUNT	898 a	 427 c	  605 g    626 t
ORIGIN
       1 atgagagtga gggggataca gaggaattat ccacaatggt ggatatggag catgttaggc 
      61 ttttggatgc taatgatttg taatgggatg tgggtcacag tctactatgg ggtacctgtg 
     121 tggaaagaag caaaaactac tctattttgt gcatcagatg ctaaagcata tgagaaagaa 
     181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaatcc acaagaaatg 
     241 gttttagaaa atgtaacaga aaatttcaac atgtgggaaa atgacatggt ggatcagatg 
     301 catgaagatg taattagttt atgggatcaa agcctcaagc catgtgtaaa gttgacccca 
     361 ctctgtgtca ctctaaactg tatcaatgct actaatgcta ctgccagcga tagcagtata 
     421 ttagatggga tgaaaaattg ctctttcaat ataaccacag aattaagaga taagagagag 
     481 aaaaagaatg cactttttta taaacttgat atagtacaac taggtggcaa ctctagctct 
     541 agtcagtaca gattaataaa ttgtaatacc tcagtcataa cacaagcctg tccaaaggtc 
     601 tcttttgacc caattcctat acattattgt gctccagctg gttatgcgat tctaaagtgt 
     661 aataataaga cattcaatgg aacaggaccg tgtaataatg tcagcacggt acaatgtaca 
     721 catggaatta agccagtggt ttcaactcaa ctattgttaa atggtagcct agcaggagga 
     781 gagataataa ttagatctaa aaatataaca gacaatagca aaacaataat agtacatctc 
     841 aatgaatctg taaagattga gtgtacgaga cccagtaata acacaagaac aagtataaga 
     901 ataggaccag gacaagcatt ttatgcaaca ggaaaagtaa taggaaatat aagagaagca 
     961 cattgtaaca ttagtgaaag taaatgggat aagactttac aaagggtaag taaaaaatta 
    1021 aaagaatact tccctcgaaa gaatataacc tttcaaccat cctcaggagg ggacctagaa 
    1081 attacaacac atagctttaa ttgtggagga gaatttttct attgcaatac atcaagcctg 
    1141 tttaatagga acagtacaga tatggttaat agtacagaaa ataacagaac catcacaatc 
    1201 cactgcagaa taaaacaaat tataaacatg tggcaggagg tgggacgagc aatgtatgcc 
    1261 cctcccattg caggaaacat aacatgtata tcaaatatca caggactact attgacaagg 
    1321 gatggaggaa acaatacgga gacatccgag acagtccccg agatattcag acctgtagga 
    1381 ggaaatatga aggacaattg gagcagtgaa ttatataaat ataaagtggt agaagttaag 
    1441 ccattaggag tagcacccac taatgcaaga aggagagtgg tggagagaga aaaaagagca 
    1501 gtgggaatgg gagctgtgtt ccttgggttc ttgggagcgg caggaagcac tatgggcgca 
    1561 gcatcaataa cgctgacggt acaggccaga caattattgt ctggtatagt gcaacagcaa 
    1621 agcaatttgc tgaaggctat agaggctcaa cagcatatgt tgaaactcac ggtctggggc 
    1681 attaaacagc tccaggcaag agtcctggcc ttggaaagat acctaaagga tcaacagctc 
    1741 ctagggatgt ggggctgctc tggaaaactc atctgcacca ctaatgtata ttggaactct 
    1801 agttggagta ataaaactta taatgatatt tgggataaca tgacctggat gcagtgggag 
    1861 agagaaatta gcaattatac agacttaata tatgaattgc ttgaagaatc acaaaaccag 
    1921 caggaaaaga atgaacaaga tttactagca ttggacagat ggaacagtct gtggaattgg 
    1981 tttaacataa caaattggct gtggtatata aaaatattca taatgatagt aggaggcttg 
    2041 ataggtttaa gaataatttt tgctgtgctt tctttagtaa atagagttag gcagggatac 
    2101 tcacctctgt cattgcagac ccttatccca agcccgaggg gaccagacag gcccggagga 
    2161 atcgaagaag aaggtggaga gcaagacaga aacagatcaa cgcgattagt gagcggattc 
    2221 ttagcgcttg tctgggacga cctgcggagc ctgtgccttt tcctctacca ccgattgaga 
    2281 gacttcatat taattgcagc gagagcgggg gaacttctgg gacgcagcag tctcaaggga 
    2341 ctacggagag ggtgggaagc ccttaagtat ctgggaagtc ttgtgcagta ttggggcctg 
    2401 gaactaaaaa ggagtgctat tagtctattg gataccctag caatagcagt aggtgaggga 
    2461 acagatagga ttctagaatt tgtattagga atttgtagag ctatccgcaa catacctaca 
    2521 agaataagac agggctttga aacagctttg ctataa
//
last modified: Tue May 31 10:56 2022


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