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LOCUS MF352900 2556 bp RNA linear VRL 06-FEB-2018
DEFINITION HIV-1 isolate 703010505_w233_32 from Malawi envelope glycoprotein
(env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
and tat protein (tat) genes, partial cds
ACCESSION MF352900
VERSION MF352900.1 GI:1338032441
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2556)
Show all sequences for reference 1
AUTHORS Bonsignori,M., Zhou,T., Sheng,Z., Chen,L., Gao,F., Joyce,M.G.,
Ozorowski,G., Chuang,G.Y., Schramm,C.A., Wiehe,K., Alam,S.M.,
Bradley,T., Gladden,M.A., Hwang,K.K., Iyengar,S., Kumar,A., Lu,X.,
Luo,K., Mangiapani,M.C., Parks,R.J., Song,H., Acharya,P.,
Bailer,R.T., Cao,A., Druz,A., Georgiev,I.S., Kwon,Y.D.,
Louder,M.K., Zhang,B., Zheng,A., Hill,B.J., Kong,R., Soto,C.,
Mullikin,J.C., Douek,D.C., Montefiori,D.C., Moody,M.A., Shaw,G.M.,
Hahn,B.H., Kelsoe,G., Hraber,P.T., Korber,B.T., Boyd,S.D.,
Fire,A.Z., Kepler,T.B., Shapiro,L., Ward,A.B., Mascola,J.R.,
Liao,H.X., Kwong,P.D. and Haynes,B.F.
TITLE Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a
CD4-Mimic Antibody
JOURNAL Cell 165 (2), 449-463 (2016)
PUBMED 26949186
REFERENCE 2 (bases 1 to 2556)
Show all sequences for reference 2
AUTHORS Hraber,P.
TITLE Direct Submission
JOURNAL Submitted (14-JUN-2017) Theoretical Biology and Biophysics, Los
Alamos National Laboratory, T6 MS K710 PO Box 1663, Los Alamos, NM
87545, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Wagh,K., Kreider,E.F., Li,Y., Barbian,H.J., Learn,G.H., Giorgi,E.,
Hraber,P.T., Decker,T.G., Smith,A.G., Gondim,M.V., Gillis,L.,
Wandzilak,J., Chuang,G.Y., Rawi,R., Cai,F., Pellegrino,P.,
Williams,I., Overbaugh,J., Gao,F., Kwong,P.D., Haynes,B.F.,
Shaw,G.M., Borrow,P., Seaman,M.S., Hahn,B.H. and Korber,B.
TITLE Completeness of HIV-1 Envelope Glycan Shield at Transmission
Determines Neutralization Breadth
JOURNAL Cell Rep 25 (4), 893-908 (2018)
PUBMED 30355496
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## Sample timepoint 1603 Patient code
703010505 Patient sex M Culture method Uncultured Sample tissue
Plasma HLA type A*3001/24 A*3002/33 B*4202 B*570301 C*1701/02/03
C*1801/02 Risk factor SH ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2556
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="703010505_w233_32"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="2012"
/subtype="C"
gene 1..2556
/gene="env"
CDS 1..2556
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AUW61144.1"
/translation="MRVRGIQRNYPQWWIWSMLGFWMLMICNGMWVTVYYGVPVWKEA
KTTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLENVTENFNMWENDMVDQMHE
DVISLWDQSLKPCVKLTPLCVTLNCINATNATASDSSILDGMKNCSFNITTELRDKRE
KKNALFYKLDIVQLGGNSSSSQYRLINCNTSVITQACPKVSFDPIPIHYCAPAGYAIL
KCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAGGEIIIRSKNITDNSKTI
IVHLNESVKIECTRPSNNTRTSIRIGPGQAFYATGKVIGNIREAHCNISESKWDKTLQ
RVSKKLKEYFPRKNITFQPSSGGDLEITTHSFNCGGEFFYCNTSSLFNRNSTDMVNST
ENNRTITIHCRIKQIINMWQEVGRAMYAPPIAGNITCISNITGLLLTRDGGNNTETSE
TVPEIFRPVGGNMKDNWSSELYKYKVVEVKPLGVAPTNARRRVVEREKRAVGMGAVFL
GFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHMLKLTVWGIKQLQA
RVLALERYLKDQQLLGMWGCSGKLICTTNVYWNSSWSNKTYNDIWDNMTWMQWEREIS
NYTDLIYELLEESQNQQEKNEQDLLALDRWNSLWNWFNITNWLWYIKIFIMIVGGLIG
LRIIFAVLSLVNRVRQGYSPLSLQTLIPSPRGPDRPGGIEEEGGEQDRNRSTRLVSGF
LALVWDDLRSLCLFLYHRLRDFILIAARAGELLGRSSLKGLRRGWEALKYLGSLVQYW
GLELKRSAISLLDTLAIAVGEGTDRILEFVLGICRAIRNIPTRIRQGFETALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="AUW61143.1"
/translation="ESEGDTEELSTMVDMEHVRLLDANDL"
gene <2119..2366
/gene="rev"
CDS <2119..2366
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AUW61142.1"
/translation="PYPKPEGTRQARRNRRRRWRARQKQINAISERILSACLGRPAEP
VPFPLPPIERLHINCSESGGTSGTQQSQGTTERVGSP"
gene <2119..2209
/gene="tat"
CDS <2119..2209
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AUW61141.1"
/translation="PLSQARGDQTGPEESKKKVESKTETDQRD"
BASE COUNT 898 a 427 c 605 g 626 t
ORIGIN
1 atgagagtga gggggataca gaggaattat ccacaatggt ggatatggag catgttaggc
61 ttttggatgc taatgatttg taatgggatg tgggtcacag tctactatgg ggtacctgtg
121 tggaaagaag caaaaactac tctattttgt gcatcagatg ctaaagcata tgagaaagaa
181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaatcc acaagaaatg
241 gttttagaaa atgtaacaga aaatttcaac atgtgggaaa atgacatggt ggatcagatg
301 catgaagatg taattagttt atgggatcaa agcctcaagc catgtgtaaa gttgacccca
361 ctctgtgtca ctctaaactg tatcaatgct actaatgcta ctgccagcga tagcagtata
421 ttagatggga tgaaaaattg ctctttcaat ataaccacag aattaagaga taagagagag
481 aaaaagaatg cactttttta taaacttgat atagtacaac taggtggcaa ctctagctct
541 agtcagtaca gattaataaa ttgtaatacc tcagtcataa cacaagcctg tccaaaggtc
601 tcttttgacc caattcctat acattattgt gctccagctg gttatgcgat tctaaagtgt
661 aataataaga cattcaatgg aacaggaccg tgtaataatg tcagcacggt acaatgtaca
721 catggaatta agccagtggt ttcaactcaa ctattgttaa atggtagcct agcaggagga
781 gagataataa ttagatctaa aaatataaca gacaatagca aaacaataat agtacatctc
841 aatgaatctg taaagattga gtgtacgaga cccagtaata acacaagaac aagtataaga
901 ataggaccag gacaagcatt ttatgcaaca ggaaaagtaa taggaaatat aagagaagca
961 cattgtaaca ttagtgaaag taaatgggat aagactttac aaagggtaag taaaaaatta
1021 aaagaatact tccctcgaaa gaatataacc tttcaaccat cctcaggagg ggacctagaa
1081 attacaacac atagctttaa ttgtggagga gaatttttct attgcaatac atcaagcctg
1141 tttaatagga acagtacaga tatggttaat agtacagaaa ataacagaac catcacaatc
1201 cactgcagaa taaaacaaat tataaacatg tggcaggagg tgggacgagc aatgtatgcc
1261 cctcccattg caggaaacat aacatgtata tcaaatatca caggactact attgacaagg
1321 gatggaggaa acaatacgga gacatccgag acagtccccg agatattcag acctgtagga
1381 ggaaatatga aggacaattg gagcagtgaa ttatataaat ataaagtggt agaagttaag
1441 ccattaggag tagcacccac taatgcaaga aggagagtgg tggagagaga aaaaagagca
1501 gtgggaatgg gagctgtgtt ccttgggttc ttgggagcgg caggaagcac tatgggcgca
1561 gcatcaataa cgctgacggt acaggccaga caattattgt ctggtatagt gcaacagcaa
1621 agcaatttgc tgaaggctat agaggctcaa cagcatatgt tgaaactcac ggtctggggc
1681 attaaacagc tccaggcaag agtcctggcc ttggaaagat acctaaagga tcaacagctc
1741 ctagggatgt ggggctgctc tggaaaactc atctgcacca ctaatgtata ttggaactct
1801 agttggagta ataaaactta taatgatatt tgggataaca tgacctggat gcagtgggag
1861 agagaaatta gcaattatac agacttaata tatgaattgc ttgaagaatc acaaaaccag
1921 caggaaaaga atgaacaaga tttactagca ttggacagat ggaacagtct gtggaattgg
1981 tttaacataa caaattggct gtggtatata aaaatattca taatgatagt aggaggcttg
2041 ataggtttaa gaataatttt tgctgtgctt tctttagtaa atagagttag gcagggatac
2101 tcacctctgt cattgcagac ccttatccca agcccgaggg gaccagacag gcccggagga
2161 atcgaagaag aaggtggaga gcaagacaga aacagatcaa cgcgattagt gagcggattc
2221 ttagcgcttg tctgggacga cctgcggagc ctgtgccttt tcctctacca ccgattgaga
2281 gacttcatat taattgcagc gagagcgggg gaacttctgg gacgcagcag tctcaaggga
2341 ctacggagag ggtgggaagc ccttaagtat ctgggaagtc ttgtgcagta ttggggcctg
2401 gaactaaaaa ggagtgctat tagtctattg gataccctag caatagcagt aggtgaggga
2461 acagatagga ttctagaatt tgtattagga atttgtagag ctatccgcaa catacctaca
2521 agaataagac agggctttga aacagctttg ctataa
//
last modified: Tue May 31 10:56 2022