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LOCUS MF352870 2557 bp RNA linear VRL 06-FEB-2018
DEFINITION HIV-1 isolate 703010505_w208_10 from Malawi nonfunctional envelope
glycoprotein (env) gene, complete sequence; and vpu protein (vpu),
rev protein (rev), and tat protein (tat) genes, partial cds
ACCESSION MF352870
VERSION MF352870.1 GI:1338032293
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2557)
Show all sequences for reference 1
AUTHORS Bonsignori,M., Zhou,T., Sheng,Z., Chen,L., Gao,F., Joyce,M.G.,
Ozorowski,G., Chuang,G.Y., Schramm,C.A., Wiehe,K., Alam,S.M.,
Bradley,T., Gladden,M.A., Hwang,K.K., Iyengar,S., Kumar,A., Lu,X.,
Luo,K., Mangiapani,M.C., Parks,R.J., Song,H., Acharya,P.,
Bailer,R.T., Cao,A., Druz,A., Georgiev,I.S., Kwon,Y.D.,
Louder,M.K., Zhang,B., Zheng,A., Hill,B.J., Kong,R., Soto,C.,
Mullikin,J.C., Douek,D.C., Montefiori,D.C., Moody,M.A., Shaw,G.M.,
Hahn,B.H., Kelsoe,G., Hraber,P.T., Korber,B.T., Boyd,S.D.,
Fire,A.Z., Kepler,T.B., Shapiro,L., Ward,A.B., Mascola,J.R.,
Liao,H.X., Kwong,P.D. and Haynes,B.F.
TITLE Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a
CD4-Mimic Antibody
JOURNAL Cell 165 (2), 449-463 (2016)
PUBMED 26949186
REFERENCE 2 (bases 1 to 2557)
Show all sequences for reference 2
AUTHORS Hraber,P.
TITLE Direct Submission
JOURNAL Submitted (14-JUN-2017) Theoretical Biology and Biophysics, Los
Alamos National Laboratory, T6 MS K710 PO Box 1663, Los Alamos, NM
87545, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Wagh,K., Kreider,E.F., Li,Y., Barbian,H.J., Learn,G.H., Giorgi,E.,
Hraber,P.T., Decker,T.G., Smith,A.G., Gondim,M.V., Gillis,L.,
Wandzilak,J., Chuang,G.Y., Rawi,R., Cai,F., Pellegrino,P.,
Williams,I., Overbaugh,J., Gao,F., Kwong,P.D., Haynes,B.F.,
Shaw,G.M., Borrow,P., Seaman,M.S., Hahn,B.H. and Korber,B.
TITLE Completeness of HIV-1 Envelope Glycan Shield at Transmission
Determines Neutralization Breadth
JOURNAL Cell Rep 25 (4), 893-908 (2018)
PUBMED 30355496
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## Sample timepoint 1431 Patient code
703010505 Patient sex M Culture method Uncultured Sample tissue
Plasma HLA type A*3001/24 A*3002/33 B*4202 B*570301 C*1701/02/03
C*1801/02 Risk factor SH ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2557
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="703010505_w208_10"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="2012"
/subtype="C"
gene 1..2557
/gene="env"
misc_feature 1..2557
/gene="env"
/note="nonfunctional envelope glycoprotein due to
mutation"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="AUW61025.1"
/translation="ESEGDTEELSTMVDMEHVRLLDANDL"
gene <2120..2367
/gene="rev"
CDS <2120..2367
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AUW61024.1"
/translation="PYPKPEGTRQARRNRRRRWRARQKQINAISERILSACLGRPAEP
VPFHLPPIERLHINCSKSGGTSGTQQSQGTTERVGSP"
gene <2120..2210
/gene="tat"
CDS <2120..2210
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AUW61023.1"
/translation="PLSQARGDQTGPEESKKKVESKTETDQRD"
BASE COUNT 906 a 421 c 601 g 629 t
ORIGIN
1 atgaaagtga gggggataca gaggaattat ccacaatggt ggatatggag catgttaggc
61 ttttggatgc taatgatttg taatgggatg tgggtcacag tctactatgg ggtacctgtg
121 tggaaagaag caaaaactac tctattttgt gcatcagatg ctaaagcata tgagaaagaa
181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaatcc acaagaaatg
241 gttttagaaa atgtaacaga aaatttcaac atgtgggaaa atgacatggt ggatcagatg
301 catgaagatg taattagttt atgggatcaa agcctcaagc catgtgtaaa gttgacccca
361 ctctgtgtca ctctaaactg tatcaatgct actaatgcta ctgacagcaa aagcaatata
421 ttagagggaa tgaaaaattg ctctttcaat ataaccacag aattaagaga taagagagag
481 aaaaagaatg cactttttta taaacttgat atagtacaac taggtggcaa ctctaactct
541 agtcagtata gattaataaa ttgtaatacc tcagtcataa cacaagcctg tccaaaggtc
601 tcttttgacc caattcctat acattattgt gctccagctg gttatgcgat tctaaagtgt
661 aataataaga cattcaatgg aacaggaccg tgtaataatg tcagcacggt acaatgtaca
721 catggaatta agccagtggt ttcaactcaa ctattgttaa atggtagcct agcagaagga
781 gagataataa ttagatctaa aaatataaca gacaatagca aaacaataat agtacatctc
841 aatgaatctg taaagattga gtgtacgaga cccagtaata acacaagaac aagtataaga
901 ataggaccag gacaagcatt ttatgcaaca ggaaaagtaa taggaaatat aagagaagca
961 cattgtaaca ttagtgaaag taaatgggat gagactttac aaagggtaag tgaaaaatta
1021 aaaaaaatac ttccctcaga agaatataac ctttcaacca tcctcaggag gggacctaga
1081 aattacaaca catagcttta attgtggagg ggaatttttc tattgcaata catcaagcct
1141 gtttaatagg acatatatgg ctactggtac agatatggct aatagtaaag aaactaacaa
1201 tactatcaca atccactgca gaataaaaca gattataaac atgtggcagg aggtgggacg
1261 agcaatgtat gcccctccca ttgcaggaaa cataacatgt atatcaaata tcacaggact
1321 actattgaca agggatggag gaaacaatac agaggatccg gagacattca gacctgtagg
1381 aggaaatatg aaggacaatt ggagcagtga attgtataaa tataaagtgg tagaagttaa
1441 gccattagga gtagcaccca ctaatgcaag aaggagagtg gtggaaagag aaaaaagagc
1501 agtgggaatg ggagctgtgt tccttgggtt cttgggagcg gcaggaagca ctatgggcgc
1561 agcatcaata acgctgacgg tacaggccag acaattattg tctggtatag tgcaacagca
1621 aagcaatttg ctgaaggcta tagaggctca acagcatatg ttgaaactca cggtctgggg
1681 cattaaacag ctccaggcaa gagtcctggc cttggaaaga tacctaaagg atcaacagct
1741 cctagggatg tggggctgct ctggaaaact catctgcacc actaatgtat attggaactc
1801 tagttggagt aataaaactt ataatgatat ttgggataac atgacctgga tgcagtggga
1861 gagagaaatt agcaattata cagacttaat atatgaattg cttgaagaat cacaaaacca
1921 gcaggaaaag aatgaacaag atttattagc attggacaga tggaacagtc tgtggaattg
1981 gtttaacata acaaattggc tgtggtatat aaaaatattc ataatgatag taggaggctt
2041 gataggttta aaaataattt ttgctgtgct ttctttagta aatagagtta ggcagggata
2101 ctcacctctg tcattgcaga cccttatccc aagcccgagg ggaccagaca ggcccggagg
2161 aatcgaagaa gaaggtggag agcaagacag aaacagatca acgcgattag tgagcggatt
2221 cttagcgctt gcctgggacg acctgcggag cctgtgcctt ttcatctacc accgattgag
2281 agacttcata ttaattgcag caagagcggg ggaacttctg ggacgcagca gtctcaaggg
2341 actacggaga gggtgggaag cccttaagta tctgggaagt cttgtgcagt attggggcct
2401 ggaactaaaa aggagtgcta ttagtctatt ggatacccta gcaatagcag taggtgaggg
2461 aacagatagg attctagaat ttgtattagg aatttgtaga gctatccgca acatacctac
2521 aagaataaga cagggctttg aaacagcttt gctataa
//
last modified: Tue May 31 10:56 2022