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LOCUS	    MF352870		    2557 bp    RNA     linear	VRL 06-FEB-2018
DEFINITION  HIV-1 isolate 703010505_w208_10 from Malawi nonfunctional envelope
	    glycoprotein (env) gene, complete sequence; and vpu protein (vpu),
	    rev protein (rev), and tat protein (tat) genes, partial cds
ACCESSION   MF352870
VERSION     MF352870.1 GI:1338032293
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2557)
            Show all sequences for reference 1
  AUTHORS   Bonsignori,M., Zhou,T., Sheng,Z., Chen,L., Gao,F., Joyce,M.G.,
	    Ozorowski,G., Chuang,G.Y., Schramm,C.A., Wiehe,K., Alam,S.M.,
	    Bradley,T., Gladden,M.A., Hwang,K.K., Iyengar,S., Kumar,A., Lu,X.,
	    Luo,K., Mangiapani,M.C., Parks,R.J., Song,H., Acharya,P.,
	    Bailer,R.T., Cao,A., Druz,A., Georgiev,I.S., Kwon,Y.D.,
	    Louder,M.K., Zhang,B., Zheng,A., Hill,B.J., Kong,R., Soto,C.,
	    Mullikin,J.C., Douek,D.C., Montefiori,D.C., Moody,M.A., Shaw,G.M.,
	    Hahn,B.H., Kelsoe,G., Hraber,P.T., Korber,B.T., Boyd,S.D.,
	    Fire,A.Z., Kepler,T.B., Shapiro,L., Ward,A.B., Mascola,J.R.,
	    Liao,H.X., Kwong,P.D. and Haynes,B.F.
  TITLE     Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a
	    CD4-Mimic Antibody
  JOURNAL   Cell 165 (2), 449-463 (2016)
  PUBMED    26949186
REFERENCE   2 (bases 1 to 2557)
            Show all sequences for reference 2
  AUTHORS   Hraber,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2017) Theoretical Biology and Biophysics, Los
	    Alamos National Laboratory, T6 MS K710 PO Box 1663, Los Alamos, NM
	    87545, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Wagh,K., Kreider,E.F., Li,Y., Barbian,H.J., Learn,G.H., Giorgi,E.,
	    Hraber,P.T., Decker,T.G., Smith,A.G., Gondim,M.V., Gillis,L.,
	    Wandzilak,J., Chuang,G.Y., Rawi,R., Cai,F., Pellegrino,P.,
	    Williams,I., Overbaugh,J., Gao,F., Kwong,P.D., Haynes,B.F.,
	    Shaw,G.M., Borrow,P., Seaman,M.S., Hahn,B.H. and Korber,B.
  TITLE     Completeness of HIV-1 Envelope Glycan Shield at Transmission
	    Determines Neutralization Breadth
  JOURNAL   Cell Rep 25 (4), 893-908 (2018)
  PUBMED    30355496
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sample timepoint 1431 Patient code
	    703010505 Patient sex M Culture method Uncultured Sample tissue
	    Plasma HLA type A*3001/24 A*3002/33 B*4202 B*570301 C*1701/02/03
	    C*1801/02 Risk factor SH ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2557
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="703010505_w208_10"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="2012"
		     /subtype="C"
     gene	     1..2557
		     /gene="env"
     misc_feature    1..2557
		     /gene="env"
		     /note="nonfunctional envelope glycoprotein due to
		     mutation"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AUW61025.1"
		     /translation="ESEGDTEELSTMVDMEHVRLLDANDL"
     gene	     <2120..2367
		     /gene="rev"
     CDS	     <2120..2367
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AUW61024.1"
		     /translation="PYPKPEGTRQARRNRRRRWRARQKQINAISERILSACLGRPAEP
		     VPFHLPPIERLHINCSKSGGTSGTQQSQGTTERVGSP"
     gene	     <2120..2210
		     /gene="tat"
     CDS	     <2120..2210
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AUW61023.1"
		     /translation="PLSQARGDQTGPEESKKKVESKTETDQRD"
BASE COUNT	906 a	 421 c	  601 g    629 t
ORIGIN
       1 atgaaagtga gggggataca gaggaattat ccacaatggt ggatatggag catgttaggc 
      61 ttttggatgc taatgatttg taatgggatg tgggtcacag tctactatgg ggtacctgtg 
     121 tggaaagaag caaaaactac tctattttgt gcatcagatg ctaaagcata tgagaaagaa 
     181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaatcc acaagaaatg 
     241 gttttagaaa atgtaacaga aaatttcaac atgtgggaaa atgacatggt ggatcagatg 
     301 catgaagatg taattagttt atgggatcaa agcctcaagc catgtgtaaa gttgacccca 
     361 ctctgtgtca ctctaaactg tatcaatgct actaatgcta ctgacagcaa aagcaatata 
     421 ttagagggaa tgaaaaattg ctctttcaat ataaccacag aattaagaga taagagagag 
     481 aaaaagaatg cactttttta taaacttgat atagtacaac taggtggcaa ctctaactct 
     541 agtcagtata gattaataaa ttgtaatacc tcagtcataa cacaagcctg tccaaaggtc 
     601 tcttttgacc caattcctat acattattgt gctccagctg gttatgcgat tctaaagtgt 
     661 aataataaga cattcaatgg aacaggaccg tgtaataatg tcagcacggt acaatgtaca 
     721 catggaatta agccagtggt ttcaactcaa ctattgttaa atggtagcct agcagaagga 
     781 gagataataa ttagatctaa aaatataaca gacaatagca aaacaataat agtacatctc 
     841 aatgaatctg taaagattga gtgtacgaga cccagtaata acacaagaac aagtataaga 
     901 ataggaccag gacaagcatt ttatgcaaca ggaaaagtaa taggaaatat aagagaagca 
     961 cattgtaaca ttagtgaaag taaatgggat gagactttac aaagggtaag tgaaaaatta 
    1021 aaaaaaatac ttccctcaga agaatataac ctttcaacca tcctcaggag gggacctaga 
    1081 aattacaaca catagcttta attgtggagg ggaatttttc tattgcaata catcaagcct 
    1141 gtttaatagg acatatatgg ctactggtac agatatggct aatagtaaag aaactaacaa 
    1201 tactatcaca atccactgca gaataaaaca gattataaac atgtggcagg aggtgggacg 
    1261 agcaatgtat gcccctccca ttgcaggaaa cataacatgt atatcaaata tcacaggact 
    1321 actattgaca agggatggag gaaacaatac agaggatccg gagacattca gacctgtagg 
    1381 aggaaatatg aaggacaatt ggagcagtga attgtataaa tataaagtgg tagaagttaa 
    1441 gccattagga gtagcaccca ctaatgcaag aaggagagtg gtggaaagag aaaaaagagc 
    1501 agtgggaatg ggagctgtgt tccttgggtt cttgggagcg gcaggaagca ctatgggcgc 
    1561 agcatcaata acgctgacgg tacaggccag acaattattg tctggtatag tgcaacagca 
    1621 aagcaatttg ctgaaggcta tagaggctca acagcatatg ttgaaactca cggtctgggg 
    1681 cattaaacag ctccaggcaa gagtcctggc cttggaaaga tacctaaagg atcaacagct 
    1741 cctagggatg tggggctgct ctggaaaact catctgcacc actaatgtat attggaactc 
    1801 tagttggagt aataaaactt ataatgatat ttgggataac atgacctgga tgcagtggga 
    1861 gagagaaatt agcaattata cagacttaat atatgaattg cttgaagaat cacaaaacca 
    1921 gcaggaaaag aatgaacaag atttattagc attggacaga tggaacagtc tgtggaattg 
    1981 gtttaacata acaaattggc tgtggtatat aaaaatattc ataatgatag taggaggctt 
    2041 gataggttta aaaataattt ttgctgtgct ttctttagta aatagagtta ggcagggata 
    2101 ctcacctctg tcattgcaga cccttatccc aagcccgagg ggaccagaca ggcccggagg 
    2161 aatcgaagaa gaaggtggag agcaagacag aaacagatca acgcgattag tgagcggatt 
    2221 cttagcgctt gcctgggacg acctgcggag cctgtgcctt ttcatctacc accgattgag 
    2281 agacttcata ttaattgcag caagagcggg ggaacttctg ggacgcagca gtctcaaggg 
    2341 actacggaga gggtgggaag cccttaagta tctgggaagt cttgtgcagt attggggcct 
    2401 ggaactaaaa aggagtgcta ttagtctatt ggatacccta gcaatagcag taggtgaggg 
    2461 aacagatagg attctagaat ttgtattagg aatttgtaga gctatccgca acatacctac 
    2521 aagaataaga cagggctttg aaacagcttt gctataa
//
last modified: Tue May 31 10:56 2022


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