View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS SIVMM316ZY 2799 bp DNA linear VRL 21-DEC-1993
DEFINITION Simian immunodeficiency virus (Mm316zl) envelope glycoprotein and
nef protein genes, complete cds and 5'end
ACCESSION L22822
VERSION L22822.1 GI:431596
KEYWORDS envelope glycoprotein; nef protein.
SOURCE Simian immunodeficiency virus
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2799)
Show all sequences for reference 1
AUTHORS Kodama,T., Mori,K., Kawahara,T., Ringler,D.J. and Desrosiers,R.C.
TITLE Analysis of simian immunodeficiency virus sequence variation in
tissues of rhesus macaques with simian AIDS
JOURNAL J. Virol. 67 (11), 6522-6534 (1993)
PUBMED 8411355
FEATURES Location/Qualifiers
source 1..2799
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/db_xref="taxon:11723"
gene 1..2457
/gene="tat"
exon 1..150
/gene="tat"
/number="1"
gene 83..2614
/gene="rev"
exon 83..150
/gene="tat"
/number="1"
misc_signal 150
/gene="tat"
/note="splice donor site"
gene 159..2798
/gene="env"
CDS 159..2798
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAA47706.1"
/db_xref="GI:431597"
/translation="MGCLGNQLLIAILLLSVYGIYCTLYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNNTVIEQAIEDVWQLFETSIKPCV
KLSPLCITMRCNKSETDRWGLTKSITTTASTTSTTASAKVDMVNETSSCIAQDNCTGL
EQEQMISCKFNMTGLKRDKKKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQE
SCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFG
FNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQR
INDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGNPEATFMW
TNCRGEFLYCKMNWFLNWVEDRNTANQKSKEQHKRNYVPCHIRQIINTWHKVGKNVYL
PPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLA
PTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQ
QLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWP
NASLTPKWNNETWQEWERKVDFLEENITALLEEAQIQQEKNTYELQKLNSWDVFGNWF
DLASWIKYIQYGVYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHIQQD
PALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQIL
QPILQRLSATLQRIREVLRTELTYLQYGWSYFHEAVQAVWRSATETLAGAWGDLWETL
RRGGRWILAIPRRIRQGLELTLL"
misc_signal 1734
/gene="tat"
/note="SU/TM cleavage site"
exon 2358..2614
/gene="rev"
/number="2"
exon 2358..2457
/gene="tat"
/number="2"
misc_signal 2358
/gene="tat"
/note="splice acceptor"
gene 2632..2799
/gene="nef"
CDS 2632..>2799
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AAA47707.1"
/db_xref="GI:431598"
/translation="MGGAISMRRSRPSGDLRQRLLRARGETYGRLLGEVEDGYSQSPG
GLDKGLSSLSCE"
BASE COUNT 899 a 525 c 673 g 702 t
ORIGIN
1 gcatgctata acacatgcta ttgtaaaaag tgttgctacc attgccagtt ttgttttctt
61 aaaaaaggct tggggatatg ttatgagcaa tcacgaaaga gaagaagaac tccggaaaaa
121 gctaaggcta atacatcttc tgcatcaagc aagtaagtat gggatgtctt gggaatcagc
181 tgcttatcgc catcttgctt ttaagtgtct atgggatcta ttgtactcta tatgtcacag
241 tcttttatgg tgtaccagct tggaggaatg cgacaattcc cctcttttgt gcaaccaaga
301 atagggatac ttgggggaca actcagtgcc taccagataa tggtgattat tcagaaatgg
361 cccttaatgt tacagaaagc tttgatgcct ggaataatac agtcatagaa caggcaatag
421 aggatgtatg gcaactcttt gagacctcaa taaagccttg tgtaaaatta tccccattat
481 gcattactat gagatgcaat aaaagtgaga cagatagatg gggattgaca aaatcaataa
541 caacaacagc atcaacaaca tcaacgacag catcagcaaa agtagacatg gtcaatgaga
601 ctagttcttg tatagcccag gataattgca caggcttgga acaagagcaa atgataagct
661 gtaaattcaa catgacaggg ttaaaaagag acaagaaaaa agagtacaat gaaacttggt
721 actctgcaga tttggtatgt gaacaaggga ataacactgg taatgaaagt agatgttaca
781 tgaaccactg taacacttct gttatccaag agtcttgtga caaacattat tgggatgcta
841 ttagatttag gtattgtgca cctccaggtt atgctttgct tagatgtaat gacacaaatt
901 attcaggctt tatgcctaaa tgttctaagg tggtggtctc ttcatgcaca aggatgatgg
961 agacacagac ttctacttgg tttggcttta atggaactag agcagaaaat agaacttata
1021 tttactggca tggtagggat aataggacta taattagttt aaataagtat tataatctaa
1081 caatgaaatg tagaagacca ggaaataaga cagttttacc agtcaccatt atgtctggat
1141 tggttttcca ctcacaacga atcaatgata ggccaaagca ggcatggtgt tggtttggag
1201 gaaaatggaa ggatgcaata aaagaggtga agcagaccat tgtcaaacat cccaggtata
1261 ctggaactaa caatactgat aaaatcaatt tgacggctcc tagaggagga aatccggaag
1321 ctaccttcat gtggacaaat tgcagaggag agttcctcta ctgtaaaatg aattggtttc
1381 taaattgggt agaagatagg aatacagcta accagaagtc aaaggaacag cataaaagga
1441 attacgtgcc atgtcatatt agacaaataa tcaacacttg gcataaagta ggcaaaaatg
1501 tttatttgcc tccaagagag ggagacctca cgtgtaactc cacagtgacc agtctcatag
1561 caaacataga ttggattgat ggaaaccaaa ctaatatcac catgagtgca gaggtggcag
1621 aactgtatcg attggaattg ggagattata aattagtaga gatcactcca attggcttgg
1681 cccccacaga tgtgaagagg tacactactg gtggcacctc aagaaataaa agaggggtct
1741 ttgtgctagg gttcttgggt tttctcgcaa cggcaggttc tgcaatgggc gcggcgtcgt
1801 tgacgctgac cgctcagtcc cgaactttat tggctgggat agtgcagcaa cagcaacagc
1861 tgttggacgt ggtcaagaga caacaagaat tgttgcgact gaccgtctgg ggaacaaaga
1921 acctccagac tagggtcact gccatcgaga agtacttaaa ggaccaggcg cagctgaatg
1981 cttggggatg tgcgtttaga caagtctgcc acactactgt accatggcca aatgcaagtc
2041 taacaccaaa gtggaacaat gagacttggc aagagtggga gcgaaaggtt gacttcttgg
2101 aggaaaatat aacagccctc ctagaggagg cacaaattca acaagagaag aacacgtatg
2161 aattacaaaa gttgaatagc tgggatgtgt ttggcaattg gtttgacctt gcttcttgga
2221 taaagtatat acaatatgga gtttatatag ttgtaggagt aatactgtta agaatagtga
2281 tctatatagt acaaatgcta gctaagttaa ggcaggggta taggccagtg ttctcttccc
2341 caccctctta tttccagcag acccatatcc aacaggaccc ggcactgcca accagagaag
2401 gcaaagaagg agacggtgga gaaggcggtg gcaacagctc ctggccttgg cagatagaat
2461 atattcattt cctgatccgc caactgatac gcctcttgac ttggctattc agcaactgca
2521 gaaccttgct atcgagagta taccagatcc tccaaccaat actccagagg ctctctgcga
2581 ccctacagag gattcgagaa gtcctcagga ctgaactgac ctacctacaa tatgggtgga
2641 gctatttcca tgaggcggtc caggccgtct ggagatctgc gacagagact cttgcgggcg
2701 cgtggggaga cttatgggag actcttagga gaggtggaag atggatactc gcaatcccca
2761 ggaggattag acaagggctt gagctcactc tcttgtgag
//
last modified: Tue May 31 10:56 2022