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LOCUS	    SIVMM316ZY		    2799 bp    DNA     linear	VRL 21-DEC-1993
DEFINITION  Simian immunodeficiency virus (Mm316zl) envelope glycoprotein and
	    nef protein genes, complete cds and 5'end
ACCESSION   L22822
VERSION     L22822.1 GI:431596
KEYWORDS    envelope glycoprotein; nef protein.
SOURCE	    Simian immunodeficiency virus
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2799)
            Show all sequences for reference 1
  AUTHORS   Kodama,T., Mori,K., Kawahara,T., Ringler,D.J. and Desrosiers,R.C.
  TITLE     Analysis of simian immunodeficiency virus sequence variation in
	    tissues of rhesus macaques with simian AIDS
  JOURNAL   J. Virol. 67 (11), 6522-6534 (1993)
  PUBMED    8411355
FEATURES             Location/Qualifiers
     source	     1..2799
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /db_xref="taxon:11723"
     gene	     1..2457
		     /gene="tat"
     exon	     1..150
		     /gene="tat"
		     /number="1"
     gene	     83..2614
		     /gene="rev"
     exon	     83..150
		     /gene="tat"
		     /number="1"
     misc_signal     150
		     /gene="tat"
		     /note="splice donor site"
     gene	     159..2798
		     /gene="env"
     CDS	     159..2798
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAA47706.1"
		     /db_xref="GI:431597"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTLYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNNTVIEQAIEDVWQLFETSIKPCV
		     KLSPLCITMRCNKSETDRWGLTKSITTTASTTSTTASAKVDMVNETSSCIAQDNCTGL
		     EQEQMISCKFNMTGLKRDKKKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQE
		     SCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFG
		     FNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQR
		     INDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGNPEATFMW
		     TNCRGEFLYCKMNWFLNWVEDRNTANQKSKEQHKRNYVPCHIRQIINTWHKVGKNVYL
		     PPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLA
		     PTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQ
		     QLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWP
		     NASLTPKWNNETWQEWERKVDFLEENITALLEEAQIQQEKNTYELQKLNSWDVFGNWF
		     DLASWIKYIQYGVYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHIQQD
		     PALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQIL
		     QPILQRLSATLQRIREVLRTELTYLQYGWSYFHEAVQAVWRSATETLAGAWGDLWETL
		     RRGGRWILAIPRRIRQGLELTLL"
     misc_signal     1734
		     /gene="tat"
		     /note="SU/TM cleavage site"
     exon	     2358..2614
		     /gene="rev"
		     /number="2"
     exon	     2358..2457
		     /gene="tat"
		     /number="2"
     misc_signal     2358
		     /gene="tat"
		     /note="splice acceptor"
     gene	     2632..2799
		     /gene="nef"
     CDS	     2632..>2799
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AAA47707.1"
		     /db_xref="GI:431598"
		     /translation="MGGAISMRRSRPSGDLRQRLLRARGETYGRLLGEVEDGYSQSPG
		     GLDKGLSSLSCE"
BASE COUNT	899 a	 525 c	  673 g    702 t
ORIGIN
       1 gcatgctata acacatgcta ttgtaaaaag tgttgctacc attgccagtt ttgttttctt 
      61 aaaaaaggct tggggatatg ttatgagcaa tcacgaaaga gaagaagaac tccggaaaaa 
     121 gctaaggcta atacatcttc tgcatcaagc aagtaagtat gggatgtctt gggaatcagc 
     181 tgcttatcgc catcttgctt ttaagtgtct atgggatcta ttgtactcta tatgtcacag 
     241 tcttttatgg tgtaccagct tggaggaatg cgacaattcc cctcttttgt gcaaccaaga 
     301 atagggatac ttgggggaca actcagtgcc taccagataa tggtgattat tcagaaatgg 
     361 cccttaatgt tacagaaagc tttgatgcct ggaataatac agtcatagaa caggcaatag 
     421 aggatgtatg gcaactcttt gagacctcaa taaagccttg tgtaaaatta tccccattat 
     481 gcattactat gagatgcaat aaaagtgaga cagatagatg gggattgaca aaatcaataa 
     541 caacaacagc atcaacaaca tcaacgacag catcagcaaa agtagacatg gtcaatgaga 
     601 ctagttcttg tatagcccag gataattgca caggcttgga acaagagcaa atgataagct 
     661 gtaaattcaa catgacaggg ttaaaaagag acaagaaaaa agagtacaat gaaacttggt 
     721 actctgcaga tttggtatgt gaacaaggga ataacactgg taatgaaagt agatgttaca 
     781 tgaaccactg taacacttct gttatccaag agtcttgtga caaacattat tgggatgcta 
     841 ttagatttag gtattgtgca cctccaggtt atgctttgct tagatgtaat gacacaaatt 
     901 attcaggctt tatgcctaaa tgttctaagg tggtggtctc ttcatgcaca aggatgatgg 
     961 agacacagac ttctacttgg tttggcttta atggaactag agcagaaaat agaacttata 
    1021 tttactggca tggtagggat aataggacta taattagttt aaataagtat tataatctaa 
    1081 caatgaaatg tagaagacca ggaaataaga cagttttacc agtcaccatt atgtctggat 
    1141 tggttttcca ctcacaacga atcaatgata ggccaaagca ggcatggtgt tggtttggag 
    1201 gaaaatggaa ggatgcaata aaagaggtga agcagaccat tgtcaaacat cccaggtata 
    1261 ctggaactaa caatactgat aaaatcaatt tgacggctcc tagaggagga aatccggaag 
    1321 ctaccttcat gtggacaaat tgcagaggag agttcctcta ctgtaaaatg aattggtttc 
    1381 taaattgggt agaagatagg aatacagcta accagaagtc aaaggaacag cataaaagga 
    1441 attacgtgcc atgtcatatt agacaaataa tcaacacttg gcataaagta ggcaaaaatg 
    1501 tttatttgcc tccaagagag ggagacctca cgtgtaactc cacagtgacc agtctcatag 
    1561 caaacataga ttggattgat ggaaaccaaa ctaatatcac catgagtgca gaggtggcag 
    1621 aactgtatcg attggaattg ggagattata aattagtaga gatcactcca attggcttgg 
    1681 cccccacaga tgtgaagagg tacactactg gtggcacctc aagaaataaa agaggggtct 
    1741 ttgtgctagg gttcttgggt tttctcgcaa cggcaggttc tgcaatgggc gcggcgtcgt 
    1801 tgacgctgac cgctcagtcc cgaactttat tggctgggat agtgcagcaa cagcaacagc 
    1861 tgttggacgt ggtcaagaga caacaagaat tgttgcgact gaccgtctgg ggaacaaaga 
    1921 acctccagac tagggtcact gccatcgaga agtacttaaa ggaccaggcg cagctgaatg 
    1981 cttggggatg tgcgtttaga caagtctgcc acactactgt accatggcca aatgcaagtc 
    2041 taacaccaaa gtggaacaat gagacttggc aagagtggga gcgaaaggtt gacttcttgg 
    2101 aggaaaatat aacagccctc ctagaggagg cacaaattca acaagagaag aacacgtatg 
    2161 aattacaaaa gttgaatagc tgggatgtgt ttggcaattg gtttgacctt gcttcttgga 
    2221 taaagtatat acaatatgga gtttatatag ttgtaggagt aatactgtta agaatagtga 
    2281 tctatatagt acaaatgcta gctaagttaa ggcaggggta taggccagtg ttctcttccc 
    2341 caccctctta tttccagcag acccatatcc aacaggaccc ggcactgcca accagagaag 
    2401 gcaaagaagg agacggtgga gaaggcggtg gcaacagctc ctggccttgg cagatagaat 
    2461 atattcattt cctgatccgc caactgatac gcctcttgac ttggctattc agcaactgca 
    2521 gaaccttgct atcgagagta taccagatcc tccaaccaat actccagagg ctctctgcga 
    2581 ccctacagag gattcgagaa gtcctcagga ctgaactgac ctacctacaa tatgggtgga 
    2641 gctatttcca tgaggcggtc caggccgtct ggagatctgc gacagagact cttgcgggcg 
    2701 cgtggggaga cttatgggag actcttagga gaggtggaag atggatactc gcaatcccca 
    2761 ggaggattag acaagggctt gagctcactc tcttgtgag
//
last modified: Tue May 31 10:56 2022


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