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LOCUS	    KX216922		    4734 bp    RNA     linear	VRL 09-MAY-2017
DEFINITION  HIV-1 isolate CH0848.3.d0017.210.52 from Malawi pol protein (pol)
	    gene, partial cds; and vif protein (vif), vpr protein (vpr), tat
	    protein (tat), rev protein (rev), vpu protein (vpu), envelope
	    glycoprotein (env), and nef protein (nef) genes, complete cds
ACCESSION   KX216922
VERSION     KX216922.1 GI:1187515169
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 4734)
            Show all sequences for reference 1
  AUTHORS   Bonsignori,M., Kreider,E.F., Fera,D., Meyerhoff,R.R., Bradley,T.,
	    Wiehe,K., Alam,S.M., Aussedat,B., Walkowicz,W.E., Hwang,K.-K.,
	    Saunders,K.O., Zhang,R., Gladden,M.A., Monroe,A., Kumar,A.,
	    Xia,S.-M., Cooper,M., Louder,M.K., McKee,K., Bailer,R.T.,
	    Pier,B.W., Jette,C.A., Kelsoe,G., Williams,W.B., Morris,L.,
	    Kappes,J., Wagh,K., Kamanga,G., Cohen,M.S., Hraber,P.T.,
	    Montefiori,D.C., Trama,A., Liao,H.-X., Kepler,T.B., Moody,M.A.,
	    Gao,F., Danishefsky,S.J., Mascola,J.R., Shaw,G.M., Hahn,B.H.,
	    Harrison,S.C., Korber,B.T. and Haynes,B.F.
  TITLE     Staged induction of HIV-1 glycan-dependent broadly neutralizing
	    antibodies.
  JOURNAL   Sci Transl Med. 2017 Mar 15;9(381). pii: eaai7514. doi:
	    10.1126/scitranslmed.aai7514.
  PUBMED    28298420
REFERENCE   2 (bases 1 to 4734)
            Show all sequences for reference 2
  AUTHORS   Bonsignori,M., Kreider,E., Fera,D., Meyerhoff,R., Bradley,T.,
	    Wiehe,K., Alam,S., Hwang,K.-K., Saunders,K., Xia,S.-M., Zhang,R.,
	    Gladden,M., Monroe,A., Pier,B., Jette,C., Kelsoe,G., Louder,M.,
	    Morris,L., Kappes,J., Wagh,K., Kamanga,G., Cohen,M., Hraber,P.,
	    Montefiori,D., Trama,A., Liao,H.-X., Kepler,T., Moody,M., Gao,F.,
	    Mascola,J., Shaw,G., Hahn,B., HARRISON,S., Korber,B. and Haynes,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAY-2016) Theoretical Biology and Biophysics, Los
	    Alamos National Laboratory, PO Box 1663, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 703010848 Days
	    post-infection 17 Viral load 442749 CD4 count NA Culture method
	    uncultured Sample tissue plasma HLA type A*0205/08 A*3002/10/12
	    B*4501/03 B*5801 Cw*07 Cw*04 Patient sex M ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..4734
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CH0848.3.d0017.210.52"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="2008"
		     /subtype="C"
     gene	     <1..173
		     /gene="pol"
     CDS	     <1..173
		     /gene="pol"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ARM43713.1"
		     /translation="PIWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIKDYGKQMA
		     GADCVAGRQDED"
     gene	     118..696
		     /gene="vif"
     CDS	     118..696
		     /gene="vif"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vif protein"
		     /protein_id="ARM43714.1"
		     /translation="MENRWQVLIVWQVDRMRIRTWNSLVKHHMYVSRRASGWFYRHHF
		     ESRHPKTSSEVHIPLGEARLIIKTHWGLQTGERDWHLGHGVSIEWRLRRYSTQVDPSL
		     ADQLIHIHYFDCFAESAIRKAILGHIVSPRCDYQAGHNKVGSLQYLALTALIKPKRIK
		     PPLPSVSKLVEDRWNNPQRTRGRRGNHTMNGH"
     gene	     636..926
		     /gene="vpr"
     CDS	     636..926
		     /gene="vpr"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpr protein"
		     /protein_id="ARM43715.1"
		     /translation="MEQPPEDQGPQREPYNEWTLELLEELKQEAVRHFPRTWLHGLGQ
		     HIYETYGDTWMGVQAIIRILQQLLFVHFRIGCQHSRIGIMPRRRARNGTSRS"
     gene	     907..3576
		     /gene="tat"
     CDS	     join(907..1121,3486..3576)
		     /gene="tat"
		     /codon_start="1"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ARM43716.1"
		     /translation="MEPVDPNLEPWNHPGSQPKTPCNNCYCKHCSYHCLVCFQTKGLG
		     ISYGRKKRRQRRSAPPSSEDHQNPLSKQPLPQTRGNPTGSEESKKKVESKTETDPFD"
     gene	     1046..3733
		     /gene="rev"
     CDS	     join(1046..1121,3486..3733)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ARM43717.1"
		     /translation="MAGRSGDSDEALLRAVRIIKILYQSNPYPKPEGTRQAQRNRRRR
		     WRARQRQIHSISERILANCLGRPAEPVPLQLPPIERLSIAGSESGGTSGTQQSQGTAE
		     GVGSP"
     gene	     1145..1405
		     /gene="vpu"
     CDS	     1145..1405
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ARM43718.1"
		     /translation="MFDLYAKVDYRLGVGALIVALIIAIIVWTIVYIEYRKLLRQRKI
		     DWLIKRIRERAEDSGNESDGDTEELSTMVDMGHLRLLDANDL"
     gene	     1323..3923
		     /gene="env"
     CDS	     1323..3923
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ARM43719.1"
		     /translation="MRVMGILKNYPQWWIWGILGFWMLMICNGKGNLWVTVYYGVPVW
		     KEAKTTLFCASDAKAYEKEVHNVWATHACVPTDPSPQELVLENVTENFNMWKNDMVDQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCSNATVDSSKVYDTRSNVNVTSINNTIMGEM
		     KNCSFNTTTEIRDKEKKEYALFYRPDVVPLDETSNTSEYRLINCNTSAVTQACPKVTF
		     EPIPIHYCAPAGYAILKCNNKTFNGTGPCSNVSTVQCTHGIRPVVSTQLLLNGSLAEK
		     EIVIRSENLTNNAKIIIVHLNTSVEIVCTRPGNNTRKSVRIGPGQTFYATGDIIGDIR
		     QAHCNISERQWNKTLQEVGKELQKHFPNKTIKYERSAGGDMEIATHSFNCGGEFFYCN
		     TSNLFNGTYNGTYISTNSTSNITLQCRIKQIINMWQGVGRAMYAPPIAGNITCKSNIT
		     GLLLTRDGGTKNNSNETEETFRPAGGDMRDNWRSELYKYKVVEIQPLGIAPTGAKRRV
		     VEREKRAAGLGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQ
		     HMLQLTVWGIKQLQARVLALERYLKDQQLLGMWGCSGKLICTTAVPWNTSWSNKSEKD
		     IWDNMTWMQWEREISNYTETIYMLLEDSQHQQERNEKDLLALDSWNSLWNWFNITNWL
		     WYIRIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSLQTLTPNPREPDRLRGIEEEG
		     GEQDRDRSIRLVSGFLPIVWDDLRSLCLFSYHRLRDFLLLAARVVELLGRSSLRGLQR
		     GWEVLKYLGSLVQYWGLELKKSAISLFDTIAIAVAEGTDRIIEVIQRFCRAIRNIPTR
		     IRQGFEASLL"
     gene	     3925..4548
		     /gene="nef"
     CDS	     3925..4548
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ARM43720.1"
		     /translation="MGSKWSKSSVVGWPAVRERIRRTEPAAEGVGAASRDLEEHGALT
		     TSNTASNNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKSAFDLSFFLKEKGGLEGLI
		     YSKQRQDILDLWVYNTQGFFPDWQNYTPGPGVRYPLTFGWCFKLVPVDPREVEEANKG
		     ENNCLLHPMSLQGMEDEHGEVLRWKFDSSLARRHMARELHPEYYKDC"
BASE COUNT     1615 a	 835 c	 1177 g   1107 t
ORIGIN
       1 atcctatttg gaaaggacca gccaaactac tctggaaagg tgaaggggca gtagtaatac 
      61 aagataacag tgacataaag gtagtaccaa ggaggaaagt aaaaatcatt aaggactatg 
     121 gaaaacagat ggcaggtgct gattgtgtgg caggtagaca ggatgaggat tagaacatgg 
     181 aatagtttag taaagcacca tatgtatgtt tcaaggagag ctagtgggtg gttttacaga 
     241 catcattttg aaagcagaca tccaaaaaca agttcagaag tacatatacc attaggagaa 
     301 gctagattga taataaaaac acattggggt ttgcaaacag gagaaagaga ctggcatttg 
     361 ggtcatggag tctccataga atggagactg agaagatata gcacacaagt agaccctagc 
     421 ctggcagacc agctaattca tattcattat tttgattgtt ttgcagaatc tgccataagg 
     481 aaagccatat taggacacat agttagtcct aggtgtgact atcaagcagg acataataag 
     541 gtaggatctc tacaatactt ggccctgaca gcattgataa aaccaaaaag gataaagcca 
     601 cctctgccta gtgttagcaa gttagtagag gatagatgga acaaccccca gaggaccagg 
     661 ggccgcagag ggaaccatac aatgaatgga cactagagct tttagaagaa ctcaagcagg 
     721 aagctgtcag acactttcct agaacgtggc tccatggctt gggacaacac atctatgaaa 
     781 cctatgggga tacttggatg ggagtccaag ctataataag aattttgcaa caactactgt 
     841 ttgttcattt cagaattggg tgccagcaca gcagaatagg cattatgcca cgtagaagag 
     901 caagaaatgg aaccagtaga tcctaaccta gagccctgga accatccagg aagtcagcca 
     961 aaaacccctt gtaataattg ttattgtaaa cactgtagct accattgttt agtttgcttt 
    1021 cagacaaaag gcttaggcat ttcctatggc aggaagaagc ggagacagcg acgaagcgct 
    1081 cctccgagca gtgaggatca tcaaaatcct ctatcaaagc agtaagtaac caatagtaga 
    1141 tgtaatgttt gatttatatg caaaagtaga ttatagacta ggagtaggag cattgatagt 
    1201 agcactaatc atagcaataa ttgtgtggac catagtatat atagaatata ggaaactgtt 
    1261 aagacaaagg aaaatagact ggttaattaa aagaattagg gaaagagctg aagatagtgg 
    1321 caatgagagt gatggggata ctgaagaatt atccacaatg gtggatatgg ggcatcttag 
    1381 gcttttggat gctaatgatt tgtaatggga aaggaaactt gtgggtcaca gtctattatg 
    1441 gggtaccagt atggaaagaa gcaaaaacta ctctgttttg tgcatcagat gccaaagcat 
    1501 atgagaaaga agtgcataat gtctgggcta cacatgcctg tgtacccaca gaccccagcc 
    1561 cacaagaatt ggttttggaa aatgtaacag aaaattttaa catgtggaaa aatgatatgg 
    1621 tagatcagat gcatgaggat ataatcagtc tatgggatca aagcctaaag ccatgtgtaa 
    1681 agttgacccc actctgtgtc actttaaatt gtagtaatgc tactgttgac agtagtaaag 
    1741 tttatgatac taggagtaat gttaatgtta ccagtatcaa taataccata atgggagaaa 
    1801 tgaaaaattg ctctttcaat acaaccacag aaataagaga taaggaaaag aaggaatatg 
    1861 cactttttta tagacctgat gtagtaccac ttgatgaaac aagcaatacc agtgagtata 
    1921 gattaataaa ttgtaatacc tcagccgtaa cacaagcctg tccaaaggtc acttttgaac 
    1981 caattcctat acattattgt gctccagctg gttatgcgat tctaaagtgt aataataaga 
    2041 cattcaatgg aacaggacca tgcagtaatg tcagcacagt acaatgtaca catggaatta 
    2101 ggccagtggt atcaacccaa ctactgttaa atggtagtct ggcagaaaaa gagatagtaa 
    2161 ttagatctga aaacctgaca aacaatgcca aaataataat agtccatctt aacacctctg 
    2221 tagaaattgt gtgtacaagg cccggcaata atacaaggaa aagtgtgaga ataggaccag 
    2281 gacaaacatt ctatgcaaca ggagacataa taggagatat aagacaagca cattgtaaca 
    2341 ttagtgaaag gcaatggaat aaaactttac aagaggtagg taaagaattg caaaaacact 
    2401 tccctaataa gacaataaag tatgaacgat ccgcaggagg agacatggaa attgcaacac 
    2461 atagctttaa ttgtggagga gaatttttct attgcaatac atcaaatctg tttaatggta 
    2521 catacaatgg tacatacata agtacaaaca gtacttcaaa catcacgctt caatgcagaa 
    2581 taaaacaaat tataaacatg tggcaggggg taggaagagc aatgtatgct cctcccattg 
    2641 caggaaacat aacatgtaaa tcaaatatca cagggctact attgacacgt gatggaggga 
    2701 ccaaaaataa tagcaacgag acagaggaga cattcaggcc tgcaggagga gatatgaggg 
    2761 ataattggag aagtgaatta tataaatata aagtagtaga aattcagcca ttaggaatag 
    2821 caccaactgg tgcaaaaagg agagtggtgg agagagaaaa aagagcagca ggactaggag 
    2881 ctttgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagca tcaataacgc 
    2941 tgacggtaca ggccagacaa ttgttgtctg gtatagtgca acagcaaagc aatttgctga 
    3001 gggctataga ggcgcaacag catatgttgc aactcacggt ctggggcatc aagcagctcc 
    3061 aggcaagagt cctggctctg gaaagatacc taaaggatca acagctccta gggatgtggg 
    3121 gctgctctgg aaaactcatc tgcaccactg ctgtgccttg gaacactagt tggagtaata 
    3181 aatctgaaaa ggatatttgg gataacatga catggatgca gtgggagaga gaaattagca 
    3241 attacacaga gacaatatac atgttgcttg aagactcgca acaccagcag gaaagaaatg 
    3301 aaaaagattt actagcattg gacagttgga acagtctgtg gaattggttt aacataacaa 
    3361 actggctgtg gtatataaga atattcataa tgatagtagg gggcttgata ggtttaagaa 
    3421 tagtttttgc tgtgctatct atagtgaata gagtcaggca gggatactca cctttgtcgt 
    3481 tgcagaccct taccccaaac ccgagggaac ccgacaggct cagaggaatc gaagaagaag 
    3541 gtggagagca agacagagac agatccattc gattagtgag cggattcttg ccaattgtct 
    3601 gggacgacct gcggagcctg tgcctcttca gttaccaccg attgagagac tttctattgc 
    3661 tggcagcgag agtggtggaa cttctgggac gcagcagtct caggggactg cagagggggt 
    3721 gggaagtcct taagtatctg ggaagtcttg tgcagtattg gggtctggaa ctaaaaaaga 
    3781 gtgctattag tctttttgat accatagcaa tagcagtagc tgaaggaaca gataggatta 
    3841 tagaagtaat acaaagattt tgtagagcta tccgcaacat acctacaaga ataagacaag 
    3901 gctttgaagc atctttgcta taaaatgggg agcaagtggt caaaaagcag tgtagttgga 
    3961 tggcctgctg tgagagaaag aataagaaga actgagccag cagcagaagg ggtaggagca 
    4021 gcatctcgag acttagagga acatggggca cttacaacca gtaacacagc cagcaacaat 
    4081 gctgattgtg cctggctgga ggcacaagag gagggagaag aagtaggctt tccagtcaga 
    4141 cctcaggtgc ctttaagacc aatgacttat aagtcagcat ttgatctcag cttcttttta 
    4201 aaagaaaagg ggggactgga agggttaatt tactctaagc aaaggcaaga catccttgat 
    4261 ttgtgggtct ataacacaca aggtttcttc cctgattggc aaaactacac accgggacca 
    4321 ggggtcagat acccactgac ctttgggtgg tgcttcaagc tagtgccagt cgacccaagg 
    4381 gaagtagaag aggccaataa aggagagaac aactgcttgc tacaccctat gagcctgcag 
    4441 ggaatggagg atgagcatgg agaagtatta agatggaagt ttgacagttc actagcacgg 
    4501 agacacatgg cccgcgagct acatccggag tattacaaag actgctgaca cagaagggac 
    4561 tttccactgg gactttccac tggggcgttc cagggggagt ggtctgggcg ggactgggag 
    4621 tggccagccc tcagatgctg catataagca gctgcttttc gcctgtactg ggtctctcta 
    4681 ggtagaccag atctgagcct gggagctctc tggcctccta gagaacccac tgct
//
last modified: Tue May 31 10:56 2022


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