HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    KX016872		    1518 bp    RNA     linear	VRL 20-JUN-2016
DEFINITION  HIV-1 isolate 2B3_D0_37 from USA envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   KX016872
VERSION     KX016872.1 GI:1036347575
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1518)
            Show all sequences for reference 1
  AUTHORS   Caskey,M., Klein,F., Lorenzi,J.C., Seaman,M.S., West,A.P. Jr..,
	    Buckley,N., Kremer,G., Nogueira,L., Braunschweig,M., Scheid,J.F.,
	    Horwitz,J.A., Shimeliovich,I., Ben-Avraham,S., Witmer-Pack,M.,
	    Platten,M., Lehmann,C., Burke,L.A., Hawthorne,T., Gorelick,R.J.,
	    Walker,B.D., Keler,T., Gulick,R.M., Fatkenheuer,G.,
	    Schlesinger,S.J. and Nussenzweig,M.C.
  TITLE     Viraemia suppressed in HIV-1-infected humans by broadly
	    neutralizing antibody 3BNC117
  JOURNAL   Nature 522 (7557), 487-491 (2015)
  PUBMED    25855300
REFERENCE   2 (bases 1 to 1518)
            Show all sequences for reference 2
  AUTHORS   Caskey,M., Klein,F., Lorenzi,J.C.C., Seaman,M.S., West,A.P. Jr..,
	    Buckley,N., Nogueira,L., Braunschweig,M., Scheid,J.F.,
	    Horwitz,J.A., Shimeliovich,I., Ben Avraham-Shulman,S.,
	    Wither-Pack,M., Platten,M., Lehmann,C., Burke,L.A., Hawthorne,T.,
	    Gorelick,R.J., Walker,B.D., Keler,T., Gulch,R.M., Fatkenheuer,G.,
	    Schlesinger,S.J. and Nussenzweig,M.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2016) Molecular Immunology, The Rockefeller
	    University, 1230 York Av, New York, NY 10065, USA
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1518
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2B3_D0_37"
		     /isolation_source="plasma"
		     /host="Homo sapiens; trial participant 2B3"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2014"
		     /subtype="B"
     gene	     1..>1518
		     /gene="env"
     CDS	     1..>1518
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ANJ88719.1"
		     /db_xref="GI:1036347576"
		     /translation="MRVMGTGKNYQNLWKGGILLLGILMICSATEQLWVTVYYGVPVW
		     KEATTTLFCASDAKSYDTESHNVWATHACVPTDPNPQEIDLNVTENFNMWKNYMVDQM
		     HEDIISLWDQSLKPCVKLTPLCVTLNCTNWTTNITGTDTNTTGTANSSVTGAGEVKNC
		     SFNITNIGGKVQKEYAAFYNLDIIPIDNNTSFILRHCNTSVITQACPKVTFEPIPIHY
		     CAPAGYAILKCKDKKFNGTGPCRNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSE
		     NFTDNAKTILAQLTEPVELNCTRPGNNTRRSIHIGPGRAFYTGEIIGDIRQAHCNISR
		     AKWNNTLEKIVVKLREQFGRNRTIVFNQSTGGDPEIVMLSFNCGGEFFYCNTTQLFNS
		     TWIDKMINNTEGNETIILPCRIKQIINMWQTVGKAMYAPPIRGEIRCSSNITGLIITR
		     DGGYSNDTNNTEIFRPGGGNMKDNWRSELYKYKVVRIEPLGLAPTKAKRRVVQREK"
BASE COUNT	575 a	 248 c	  323 g    372 t
ORIGIN
       1 atgagagtga tggggacagg gaagaattat caaaacttgt ggaaaggggg catcttgctc 
      61 cttgggatat tgatgatctg tagtgctaca gaacaattgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaagc aaccaccact ttattctgtg catcagatgc taaatcatat 
     181 gacacagaga gtcataatgt ttgggccaca catgcatgtg tacccacaga ccccaaccca 
     241 caagaaatag acttgaatgt gacagaaaat tttaacatgt ggaaaaatta catggtagat 
     301 cagatgcatg aggatataat cagtttatgg gatcaaagcc taaaaccatg tgtaaagtta 
     361 accccactct gtgttacatt aaattgtact aattggacta ctaatatcac cggaactgat 
     421 actaatacca ctggaactgc gaatagcagc gtgacaggag caggagaagt aaaaaactgc 
     481 tcttttaata tcacaaacat aggaggtaag gtgcagaagg aatatgcagc tttttataac 
     541 cttgatataa taccaataga taataatact agctttatat taagacattg taatacctca 
     601 gtcattacac aagcttgtcc aaaggtaacc tttgaaccaa ttcctataca ttattgtgcc 
     661 ccggctggtt atgcgattct aaagtgtaaa gataagaagt tcaatggaac aggaccatgt 
     721 cgcaatgtta gtacagtaca atgtacacat ggaattaagc cagtggtatc aactcaacta 
     781 ctgttgaatg gcagtctagc agaggaagag gtagtaatta gatctgaaaa cttcacagat 
     841 aatgctaaaa ctatactagc acagctgaca gaaccagtag aacttaattg tacaagacct 
     901 ggcaacaata caagaagaag tatacatata ggaccaggga gagcattcta tacaggagag 
     961 ataataggag atataagaca agcacattgc aacattagta gagcaaaatg gaataacact 
    1021 ttagaaaaaa tagttgtaaa actaagagaa caatttggca ggaatagaac aatagtcttt 
    1081 aatcaatcta caggggggga cccagagatt gtaatgctca gttttaattg tggaggggaa 
    1141 tttttctact gtaatacaac acaactgttt aatagtactt ggattgataa aatgataaat 
    1201 aacactgaag gaaatgaaac catcatactc ccatgcagaa taaagcaaat tataaacatg 
    1261 tggcagacag taggaaaagc aatgtatgcc cctcccatca ggggagagat tcgctgctca 
    1321 tcaaatatta caggactgat aataacaaga gatggtggtt atagtaatga taccaacaac 
    1381 acagagatct ttagacctgg aggaggaaac atgaaggaca attggagaag tgaattgtat 
    1441 aaatataaag tagtaagaat tgaaccatta ggattagcac ccaccaaagc aaagagaaga 
    1501 gtggtgcaga gagaaaaa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health