View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS KX016811 1551 bp RNA linear VRL 20-JUN-2016
DEFINITION HIV-1 isolate 2A1_W3_C44 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION KX016811
VERSION KX016811.1 GI:1036347453
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1551)
Show all sequences for reference 1
AUTHORS Caskey,M., Klein,F., Lorenzi,J.C., Seaman,M.S., West,A.P. Jr..,
Buckley,N., Kremer,G., Nogueira,L., Braunschweig,M., Scheid,J.F.,
Horwitz,J.A., Shimeliovich,I., Ben-Avraham,S., Witmer-Pack,M.,
Platten,M., Lehmann,C., Burke,L.A., Hawthorne,T., Gorelick,R.J.,
Walker,B.D., Keler,T., Gulick,R.M., Fatkenheuer,G.,
Schlesinger,S.J. and Nussenzweig,M.C.
TITLE Viraemia suppressed in HIV-1-infected humans by broadly
neutralizing antibody 3BNC117
JOURNAL Nature 522 (7557), 487-491 (2015)
PUBMED 25855300
REFERENCE 2 (bases 1 to 1551)
Show all sequences for reference 2
AUTHORS Caskey,M., Klein,F., Lorenzi,J.C.C., Seaman,M.S., West,A.P. Jr..,
Buckley,N., Nogueira,L., Braunschweig,M., Scheid,J.F.,
Horwitz,J.A., Shimeliovich,I., Ben Avraham-Shulman,S.,
Wither-Pack,M., Platten,M., Lehmann,C., Burke,L.A., Hawthorne,T.,
Gorelick,R.J., Walker,B.D., Keler,T., Gulch,R.M., Fatkenheuer,G.,
Schlesinger,S.J. and Nussenzweig,M.C.
TITLE Direct Submission
JOURNAL Submitted (03-APR-2016) Molecular Immunology, The Rockefeller
University, 1230 York Av, New York, NY 10065, USA
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1551
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2A1_W3_C44"
/isolation_source="plasma"
/host="Homo sapiens; trial participant 2A1"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2014"
/subtype="B"
gene 1..>1551
/gene="env"
CDS 1..>1551
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ANJ88658.1"
/db_xref="GI:1036347454"
/translation="MRVKEIRKNYQHLWKGGILWKWGIMLLGMLMICRAADQLWVTVY
YGVPVWKEATTTLFCASDAKGYDTEVHNVWATHACVPTDPSPQEVVLGNVTENFNMWE
NNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLKCTEVNLNGTDVLNNNWTVNGEMTNC
SFNVTSNIRDKVTTGYALFDRLDVIPIEDNRSIKNNSHTSYRLINCNTSVITQACPKV
TFEPIPIHYCAPAGFAILKCNNKTFNGKGECKNVSTVQCTHGIKPVVSTQLLLNGSLA
EEDVVLRSDNFSDNAKTIIVHLNKSVEINCTRPNNNTRKDIHIGPGRAFYATGAIIGD
PRQAHCNISKAQWNDTLGRVVKKLREQFKNKTIVFNQSSGGDLEIVMHSFNCGGEFFY
CDTTQLFNSTWNSTGEIEESNNTVDTITLPCRIKQIINMWQEVGKAMYAPPISGQIRC
VSNITGLILTRDGGINTSDDNTEIFRPAGGDMRDNWRSELYKYKVVKIEPLGIAPTKA
RRRVVQREK"
BASE COUNT 574 a 260 c 337 g 380 t
ORIGIN
1 atgagagtga aggagatcag gaagaattat cagcacttgt ggaaaggggg catcttgtgg
61 aaatggggca tcatgctcct tgggatgtta atgatctgta gggctgcaga ccaattgtgg
121 gtcacagtct attatggggt acctgtgtgg aaggaagcaa caaccactct attttgtgca
181 tcagatgcta aaggatatga tacagaggtt cataatgttt gggccacaca tgcctgtgtg
241 cccacagacc ccagtccaca agaagttgta ttgggaaatg tgacagaaaa ttttaatatg
301 tgggaaaata acatggtaga ccaaatgcat gaggatataa tcagtttatg ggatcaaagc
361 ctaaagccat gtgtaaaatt aaccccactc tgtgttactt taaagtgcac tgaggtgaac
421 ttgaatggta ctgatgtcct taataacaat tggacagtga atggagaaat gacaaactgc
481 tctttcaatg taacctcaaa tataagagat aaggtgacaa caggatatgc gctttttgat
541 agacttgatg taataccaat agaagataat agatcaataa aaaataatag ccatactagc
601 tataggttga taaattgtaa tacctcagtc atcacacaag cctgtccaaa ggtaaccttt
661 gaaccaatcc ccatacatta ttgtgccccg gctggttttg cgattctaaa gtgtaacaat
721 aagacattca atggaaaagg agaatgtaaa aatgtcagca cagtacaatg tacacatgga
781 attaagccag tagtatcaac ccaactgctg ttaaatggca gtttagcaga ggaagatgta
841 gtacttagat ctgacaattt ctctgacaat gctaaaacca taatagtaca tctgaataaa
901 tccgtagaaa tcaattgtac aaggcccaac aacaatacaa gaaaagatat acacatagga
961 ccaggaagag cattttatgc aacaggggcc ataataggag atccaagaca agcacattgt
1021 aacattagta aagcacaatg gaatgacact ttaggacggg tagttaaaaa actaagagaa
1081 caatttaaga acaaaacaat agtctttaat caatcctcag gaggggacct agaaattgta
1141 atgcacagct ttaattgtgg aggggaattt ttctactgtg atacaacaca actgtttaat
1201 agtacttgga atagtactgg ggagattgaa gagtcaaata acactgttga cactatcact
1261 ctcccatgca gaataaaaca aattataaac atgtggcagg aagtaggaaa agcaatgtat
1321 gcccctccca tcagcggaca aattagatgt gtatcaaaca tcacagggct gatattaaca
1381 agagatggtg gtattaatac ctcagacgac aacactgaga tcttcagacc tgccggagga
1441 gatatgagag acaattggag aagtgaatta tataaatata aagtagtaaa aattgaacca
1501 ttaggaatag cacccaccaa ggcaaggaga agagtggtgc agagagaaaa a
//
last modified: Tue May 31 10:56 2022