View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS KT896570 2541 bp RNA linear VRL 20-MAR-2016
DEFINITION HIV-1 isolate 052_2173_I_D1 from Malawi envelope glycoprotein (env)
gene, complete cds
ACCESSION KT896570
VERSION KT896570.1 GI:1005817007
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2541)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Hudelson,S.E., Redd,A.D., Swanstrom,R., Ou,S.-S.,
Zhang,X.C., Ping,L.-H., Piwowar-Manning,E., Porcella,S.F.,
Sievers,M.F., Martens,C.A., Bruno,D., Dukhovlinova,E., McCauley,M.,
Gamble,T., Fogel,J.M., Sabin,D., Quinn,T.C., Gunde,L.,
Maliwichi,M., Nhando,N., Akelo,V., Moyo,S., Panchia,R.,
Kumarasamy,N., Chotirosniramit,N., Melo,M.G.d., Pilotto,J.,
Grinsztejn,B., Mayer,K., Chen,Y.Q., Hughes,J.P. and Cohen,M.S.
TITLE Treatment as Prevention: Characterization of Partner Infections in
the HIV Prevention Trials Network 052 Trial.
JOURNAL J. Acquir. Immune Defic. Syndr.. 74(1); 112-116 (2017)
PUBMED 27532476
REFERENCE 2 (bases 1 to 2541)
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Hudelson,S.E., Redd,A.D., Swanstrom,R., Ou,S.-S.,
Zhang,C., Ping,L.-H., Piwowar-Manning,E., Porcella,S.F.,
Sievers,M., Martens,C.A., Bruno,D., Dukhovlinova,E., McCauley,M.,
Gamble,T., Sabin,D., Quinn,T.C., Gunde,L., Maliwichi,M., Nhando,N.,
Akelo,V., Moyo,S., Panchia,R., Kumarasamy,N., Chotirosniramit,N.,
Rocha,M.M., Grinsztejn,B., Mayer,K., Chen,Y.Q., Hughes,J.P. and
Cohen,M.S.
TITLE Direct Submission
JOURNAL Submitted (12-OCT-2015) Lineberger Comprehensive Cancer Center,
University of North Carolina at Chapel Hill, 450 West Dr, Chapel
Hill, NC 27599, USA
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2541
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="052_2173_I_D1"
/isolation_source="blood plasma"
/host="Homo sapiens; HPTN052 transmission case C, index
(donor)"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="10-Jun-2011"
/subtype="C"
gene 1..2541
/gene="env"
CDS 1..2541
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AMQ26227.1"
/db_xref="GI:1005817008"
/translation="MRVMGILRICQQWWIWGSLGFWMLMICSVVGNLWVTVYYGVPVW
KEAKTTLFCASDAKAYGNEMHNAWATHACVPTDPNPQEMVLGNVTENFNMWRNDMVDQ
MHEDIISLWDQSLKPCVKLTPLCVTLSCQNAKVTSNDGMNETIKNCSFNTTTEIRDKE
KKDYALFYKLDVVPLDERNDSNSSEYILINCNTSTITQACPKVSFDPIPIHYCAPAGY
AILKCNNETFNGTGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAKEIIIRSENLTNNVK
TIIVHLNESIKIVCTRPGNNTRRSIRIGPGQVFYATGDIIGDIRQAHCNISEAQWNKT
LHRVSEKLKELFNKTIEFGPSTGGDLEITTHSFNCRGEFFYCNTSKLFSGTYANLSTD
DPSNSTITLPCKIKQIINMWQEVGRAMYAPPIRGNITCESNITGLLLVRDGGNTTNET
FRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTKARRIVVEREKRAVGLGAVIFGFLGA
AGSTMGAASIALTVQARQVLSGIVQQQSNLLKAIEAQQHLLQLTVWGIKQLQARVLAV
ERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKSLTDIWDNMTWMQWDTEISNYTSI
IYELLEESQLQQDKNEKDLLALNSWKNLWTWFDISNWLWYIKIFIIIIGGLIGLRIVF
AVLSMLHRVRQGYSPLSFQTLTPSPGGLDRLGRIEEGGGEQDKDRSIRLVNGFLALFW
DDLRSLCLFSCHRLRDFILVAARAVELLGRSSLRGLQRGWEALKYLGGHVQYWGLELK
KSAISLLDTVAIAVAEGTDRIIELAQRICRAICNIPTRIRQGAEVALQ"
BASE COUNT 872 a 426 c 611 g 632 t
ORIGIN
1 atgagagtga tggggatatt gaggatttgt caacaatggt ggatatgggg cagcttaggc
61 ttttggatgt taatgatctg tagtgtggtg ggaaacttgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaggc aaaaactact ctattctgtg catcagatgc taaagcatat
181 gggaacgaaa tgcataatgc ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatgg ttttgggaaa tgtaacagaa aattttaaca tgtggagaaa tgacatggtg
301 gatcagatgc atgaggatat aatcagttta tgggaccaaa gcctaaagcc atgtgtaaaa
361 ttgactccac tctgtgtcac tttaagttgt caaaatgcta aggttacctc taatgatggt
421 atgaatgaaa caataaaaaa ttgctctttc aatacaacca cagaaataag agacaaggaa
481 aagaaagact atgcactttt ttataaactt gatgtagtac cacttgatga gcggaatgac
541 agcaactcta gtgagtatat attaataaat tgtaatacct caaccataac acaggcctgt
601 ccaaaggttt cttttgatcc aattcctata cattattgtg ctccagctgg ttatgcgatt
661 ctaaagtgta ataatgagac attcaatggg acaggaccat gcactaatgt cagcacagta
721 caatgtacac atggaattaa gccagtagta tcaactcaat tactattaaa tggcagccta
781 gcaaaagaga taataattag atctgaaaat ctgacaaata atgtcaaaac aataatagta
841 catcttaatg agtctataaa aattgtgtgt acaagacctg gcaataatac aagacgaagt
901 ataaggatag gaccaggaca agtattctat gcaacaggag acataatagg agatataaga
961 caagcacatt gtaacattag tgaagcacaa tggaataaga cgttacacag ggtaagtgaa
1021 aaattaaaag aactcttcaa taaaacaata gaatttggac catctacagg aggggaccta
1081 gaaattacaa cacatagctt taattgcaga ggagagtttt tctattgtaa tacatcaaaa
1141 ctgtttagtg gtacatatgc aaacttaagt acagatgatc cttcaaactc aacaatcaca
1201 ctcccatgca aaataaaaca aattataaac atgtggcagg aggtagggcg agcaatgtat
1261 gctcctccca ttagaggaaa cataacatgt gaatcgaata tcacaggact actattggtg
1321 cgtgatggag gaaatactac gaatgagaca tttagacctg gaggaggaga catgagggac
1381 aattggagaa gtgaattata caagtataaa gtggtagaaa ttaagccatt gggaatagca
1441 cccactaagg caagaagaat agtggtggag agagaaaaaa gagcagtagg actaggagct
1501 gtgatctttg ggttcttggg agcagcagga agcactatgg gcgcggcgtc aatagcgctg
1561 acggtacagg ccaggcaagt gttgtctggt atagtgcaac agcaaagcaa tttgctgaaa
1621 gccattgagg cgcaacagca tctgttgcaa ctcacagtct ggggcattaa gcaactccag
1681 gcaagagtcc tggctgtaga aagataccta aaggatcaac agctcctagg gatttggggc
1741 tgctctggaa aacttatctg caccactaat gtgccttgga actccagttg gagtaataaa
1801 tctctaacag acatttggga taacatgacc tggatgcagt gggacacaga aattagtaat
1861 tacacaagca taatatatga gctgcttgaa gaatcgcaac tccagcagga caaaaatgaa
1921 aaggatttat tagcattaaa cagttggaaa aatctgtgga cttggtttga catatcaaat
1981 tggctgtggt atataaaaat atttataata ataataggag gcttgatagg tttaagaata
2041 gtttttgctg tgctttctat gttgcataga gttaggcagg gatactcacc tttgtcattt
2101 cagaccctta ccccgagccc agggggactc gacaggctcg gaagaatcga agaaggaggt
2161 ggagagcaag acaaagacag atcaattcga ttagtgaacg gattcttggc acttttctgg
2221 gacgatctgc ggagcctgtg ccttttcagc tgccaccgat tgagagactt catattggtg
2281 gcagcgagag cggtggaact tctgggacgc agcagtctca gggggcttca gagggggtgg
2341 gaagcactga agtatctggg aggtcatgtg cagtattggg gtctagaact gaaaaagagt
2401 gccattagtc tgcttgatac cgtagcaata gcagtagctg aaggaacaga taggattata
2461 gaattagcac aaagaatttg tagagctatc tgcaatatac ctacaagaat aaggcagggc
2521 gctgaagtag ctttgcagta a
//
last modified: Tue May 31 10:56 2022