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LOCUS	    KT896570		    2541 bp    RNA     linear	VRL 20-MAR-2016
DEFINITION  HIV-1 isolate 052_2173_I_D1 from Malawi envelope glycoprotein (env)
	    gene, complete cds
ACCESSION   KT896570
VERSION     KT896570.1 GI:1005817007
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2541)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Hudelson,S.E., Redd,A.D., Swanstrom,R., Ou,S.-S.,
	    Zhang,X.C., Ping,L.-H., Piwowar-Manning,E., Porcella,S.F.,
	    Sievers,M.F., Martens,C.A., Bruno,D., Dukhovlinova,E., McCauley,M.,
	    Gamble,T., Fogel,J.M., Sabin,D., Quinn,T.C., Gunde,L.,
	    Maliwichi,M., Nhando,N., Akelo,V., Moyo,S., Panchia,R.,
	    Kumarasamy,N., Chotirosniramit,N., Melo,M.G.d., Pilotto,J.,
	    Grinsztejn,B., Mayer,K., Chen,Y.Q., Hughes,J.P. and Cohen,M.S.
  TITLE     Treatment as Prevention: Characterization of Partner Infections in
	    the HIV Prevention Trials Network 052 Trial.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 74(1); 112-116 (2017)
  PUBMED    27532476
REFERENCE   2 (bases 1 to 2541)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H., Hudelson,S.E., Redd,A.D., Swanstrom,R., Ou,S.-S.,
	    Zhang,C., Ping,L.-H., Piwowar-Manning,E., Porcella,S.F.,
	    Sievers,M., Martens,C.A., Bruno,D., Dukhovlinova,E., McCauley,M.,
	    Gamble,T., Sabin,D., Quinn,T.C., Gunde,L., Maliwichi,M., Nhando,N.,
	    Akelo,V., Moyo,S., Panchia,R., Kumarasamy,N., Chotirosniramit,N.,
	    Rocha,M.M., Grinsztejn,B., Mayer,K., Chen,Y.Q., Hughes,J.P. and
	    Cohen,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2015) Lineberger Comprehensive Cancer Center,
	    University of North Carolina at Chapel Hill, 450 West Dr, Chapel
	    Hill, NC 27599, USA
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2541
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="052_2173_I_D1"
		     /isolation_source="blood plasma"
		     /host="Homo sapiens; HPTN052 transmission case C, index
		     (donor)"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="10-Jun-2011"
		     /subtype="C"
     gene	     1..2541
		     /gene="env"
     CDS	     1..2541
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AMQ26227.1"
		     /db_xref="GI:1005817008"
		     /translation="MRVMGILRICQQWWIWGSLGFWMLMICSVVGNLWVTVYYGVPVW
		     KEAKTTLFCASDAKAYGNEMHNAWATHACVPTDPNPQEMVLGNVTENFNMWRNDMVDQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLSCQNAKVTSNDGMNETIKNCSFNTTTEIRDKE
		     KKDYALFYKLDVVPLDERNDSNSSEYILINCNTSTITQACPKVSFDPIPIHYCAPAGY
		     AILKCNNETFNGTGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAKEIIIRSENLTNNVK
		     TIIVHLNESIKIVCTRPGNNTRRSIRIGPGQVFYATGDIIGDIRQAHCNISEAQWNKT
		     LHRVSEKLKELFNKTIEFGPSTGGDLEITTHSFNCRGEFFYCNTSKLFSGTYANLSTD
		     DPSNSTITLPCKIKQIINMWQEVGRAMYAPPIRGNITCESNITGLLLVRDGGNTTNET
		     FRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTKARRIVVEREKRAVGLGAVIFGFLGA
		     AGSTMGAASIALTVQARQVLSGIVQQQSNLLKAIEAQQHLLQLTVWGIKQLQARVLAV
		     ERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKSLTDIWDNMTWMQWDTEISNYTSI
		     IYELLEESQLQQDKNEKDLLALNSWKNLWTWFDISNWLWYIKIFIIIIGGLIGLRIVF
		     AVLSMLHRVRQGYSPLSFQTLTPSPGGLDRLGRIEEGGGEQDKDRSIRLVNGFLALFW
		     DDLRSLCLFSCHRLRDFILVAARAVELLGRSSLRGLQRGWEALKYLGGHVQYWGLELK
		     KSAISLLDTVAIAVAEGTDRIIELAQRICRAICNIPTRIRQGAEVALQ"
BASE COUNT	872 a	 426 c	  611 g    632 t
ORIGIN
       1 atgagagtga tggggatatt gaggatttgt caacaatggt ggatatgggg cagcttaggc 
      61 ttttggatgt taatgatctg tagtgtggtg ggaaacttgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaggc aaaaactact ctattctgtg catcagatgc taaagcatat 
     181 gggaacgaaa tgcataatgc ctgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatgg ttttgggaaa tgtaacagaa aattttaaca tgtggagaaa tgacatggtg 
     301 gatcagatgc atgaggatat aatcagttta tgggaccaaa gcctaaagcc atgtgtaaaa 
     361 ttgactccac tctgtgtcac tttaagttgt caaaatgcta aggttacctc taatgatggt 
     421 atgaatgaaa caataaaaaa ttgctctttc aatacaacca cagaaataag agacaaggaa 
     481 aagaaagact atgcactttt ttataaactt gatgtagtac cacttgatga gcggaatgac 
     541 agcaactcta gtgagtatat attaataaat tgtaatacct caaccataac acaggcctgt 
     601 ccaaaggttt cttttgatcc aattcctata cattattgtg ctccagctgg ttatgcgatt 
     661 ctaaagtgta ataatgagac attcaatggg acaggaccat gcactaatgt cagcacagta 
     721 caatgtacac atggaattaa gccagtagta tcaactcaat tactattaaa tggcagccta 
     781 gcaaaagaga taataattag atctgaaaat ctgacaaata atgtcaaaac aataatagta 
     841 catcttaatg agtctataaa aattgtgtgt acaagacctg gcaataatac aagacgaagt 
     901 ataaggatag gaccaggaca agtattctat gcaacaggag acataatagg agatataaga 
     961 caagcacatt gtaacattag tgaagcacaa tggaataaga cgttacacag ggtaagtgaa 
    1021 aaattaaaag aactcttcaa taaaacaata gaatttggac catctacagg aggggaccta 
    1081 gaaattacaa cacatagctt taattgcaga ggagagtttt tctattgtaa tacatcaaaa 
    1141 ctgtttagtg gtacatatgc aaacttaagt acagatgatc cttcaaactc aacaatcaca 
    1201 ctcccatgca aaataaaaca aattataaac atgtggcagg aggtagggcg agcaatgtat 
    1261 gctcctccca ttagaggaaa cataacatgt gaatcgaata tcacaggact actattggtg 
    1321 cgtgatggag gaaatactac gaatgagaca tttagacctg gaggaggaga catgagggac 
    1381 aattggagaa gtgaattata caagtataaa gtggtagaaa ttaagccatt gggaatagca 
    1441 cccactaagg caagaagaat agtggtggag agagaaaaaa gagcagtagg actaggagct 
    1501 gtgatctttg ggttcttggg agcagcagga agcactatgg gcgcggcgtc aatagcgctg 
    1561 acggtacagg ccaggcaagt gttgtctggt atagtgcaac agcaaagcaa tttgctgaaa 
    1621 gccattgagg cgcaacagca tctgttgcaa ctcacagtct ggggcattaa gcaactccag 
    1681 gcaagagtcc tggctgtaga aagataccta aaggatcaac agctcctagg gatttggggc 
    1741 tgctctggaa aacttatctg caccactaat gtgccttgga actccagttg gagtaataaa 
    1801 tctctaacag acatttggga taacatgacc tggatgcagt gggacacaga aattagtaat 
    1861 tacacaagca taatatatga gctgcttgaa gaatcgcaac tccagcagga caaaaatgaa 
    1921 aaggatttat tagcattaaa cagttggaaa aatctgtgga cttggtttga catatcaaat 
    1981 tggctgtggt atataaaaat atttataata ataataggag gcttgatagg tttaagaata 
    2041 gtttttgctg tgctttctat gttgcataga gttaggcagg gatactcacc tttgtcattt 
    2101 cagaccctta ccccgagccc agggggactc gacaggctcg gaagaatcga agaaggaggt 
    2161 ggagagcaag acaaagacag atcaattcga ttagtgaacg gattcttggc acttttctgg 
    2221 gacgatctgc ggagcctgtg ccttttcagc tgccaccgat tgagagactt catattggtg 
    2281 gcagcgagag cggtggaact tctgggacgc agcagtctca gggggcttca gagggggtgg 
    2341 gaagcactga agtatctggg aggtcatgtg cagtattggg gtctagaact gaaaaagagt 
    2401 gccattagtc tgcttgatac cgtagcaata gcagtagctg aaggaacaga taggattata 
    2461 gaattagcac aaagaatttg tagagctatc tgcaatatac ctacaagaat aaggcagggc 
    2521 gctgaagtag ctttgcagta a
//
last modified: Tue May 31 10:56 2022


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