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LOCUS	    KT124425		    1467 bp    RNA     linear	VRL 27-JUL-2015
DEFINITION  HIV-1 isolate 2005-M0 from India gag protein (gag) and pol protein
	    (pol) genes, partial cds
ACCESSION   KT124425
VERSION     KT124425.1 GI:902279757
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1467)
            Show all sequences for reference 1
  AUTHORS   Sharma,S., Aralaguppe,S., Saravanan,S., Murugavel,K., Solomon,S.
	    and Ranga,U.
  TITLE     Immune Escape in the chronic phase of Subtype C HIV-1 infection in
	    the Indian Clinical cohort
  JOURNAL   Unpublished
REFERENCE   2 (bases 1 to 1467)
            Show all sequences for reference 2
  AUTHORS   Sharma,S., Aralaguppe,S., Murugavel,K., Solomon,S. and Ranga,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2015) Molecular Biology and Genetics Unit,
	    JNCASR, Sri Ram Pura Cross, Bangalore, Karnataka 560064, India
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Sharma,S., Aralaguppe,S.G., Abrahams,M.-R., Williamson,C., Gray,C.,
	    Balakrishnan,P., Saravanan,S., Murugavel,K.G., Solomon,S. and
	    Ranga,U.
  TITLE     The PTAP sequence duplication in HIV-1 subtype C Gag p6 in
	    drug-naive subjects of India and South Africa.
  JOURNAL   BMC. Infect. Dis.. 17(1); 95 (2017)
  PUBMED    28118816
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code NLR2005 Patient sex F
	    Patient age 35 Culture method Uncultured Sample tissue plasma Viral
	    Load 5713 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..1467
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2005-M0"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="India"
		     /collection_date="26-Sep-2011"
		     /subtype="C"
     gene	     1..>1467
		     /gene="gag"
     CDS	     1..>1467
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AKR75166.1"
		     /db_xref="GI:902279758"
		     /translation="MGARASVLRGEKLDKWERIRLRPGGRKHYMLKHIVWASRELDRF
		     ALNPSLLETAEGCKQIMQQLQPSLQTGTEEIKSLFNTVATLYCVHNGIEVRDTKEALD
		     QIEEEQNKSQQKTQQAADGKGSQNYPIVQNLQGQMVHQPISPRTLNAWVKVIEEKAFS
		     PEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPN
		     VPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPVPVGDIYKRWIILGLNKIVRMYSPTS
		     ILDIKQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKTILRALGP
		     GATLEEMMTACQGVGGPSHKARVLAEAMSQANTNIMIQRGNFKGSKRPIKCFNCGKEG
		     HIAKNCRAPRKKGCWKCGKEGHQMKDCTERQVNFLGKLWPSHKGRPGNFLQSRPEPTA
		     PPAESFRFEETTPTLKPEPTDREPLTSLKSLFGSDPLSQ"
     gene	     <1275..>1467
		     /gene="pol"
     CDS	     <1275..>1467
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AKR75167.1"
		     /db_xref="GI:902279759"
		     /translation="FFREALAFPQGEAREFSSEQTGANSPTSRELQVRGDNPHPEAGA
		     NRQGTLNFPQITLWQRPLVS"
BASE COUNT	532 a	 290 c	  356 g    289 t
ORIGIN
       1 atgggtgcga gagcgtcagt attaagaggc gaaaaattag ataaatggga aagaattagg 
      61 ttaaggccag ggggaaggaa acattatatg ctaaaacaca tagtatgggc aagcagggag 
     121 ctggacagat ttgcacttaa ccctagcctt ttagagacag cagaaggctg taaacaaatc 
     181 atgcaacagc tacaaccatc tcttcagaca ggaacagagg aaattaagtc attattcaac 
     241 acagtagcaa ctctctattg tgtacataat gggatagagg tacgagacac caaggaagcc 
     301 ttagaccaga tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggctgctgac 
     361 gggaagggta gtcaaaatta tcctatagtg cagaacctcc aagggcaaat ggtacaccaa 
     421 cccatatcac ctagaacttt gaatgcatgg gtaaaagtaa tagaggagaa ggcttttagc 
     481 ccagaggtga tacccatgtt tacagcatta tcagaaggag ccaccccaca agatttaaac 
     541 accatgttaa atacagtagg gggacatcaa gcagctatgc aaatgttaaa agataccatt 
     601 aatgaagaag ctgcagaatg ggatagatta catccagtac atgcagggcc taatgtacca 
     661 ggccaaatga gagaaccaag ggggagtgac atagcaggaa ctactagtac ccttcaggaa 
     721 caaatagcat ggatgacaag taacccacct gttccagtgg gagacatcta taaaagatgg 
     781 ataattctgg gattaaataa aatagtaaga atgtatagcc ctaccagcat tttggacata 
     841 aaacaagggc caaaggaacc ctttagagac tatgtagacc ggttctttaa aactttaaga 
     901 gctgaacaag ctacacaaga ggtaaaaaat tggatgacag acaccttgtt agtccaaaat 
     961 gcgaacccag attgtaagac cattttaaga gcattaggac caggggctac attagaagag 
    1021 atgatgacag catgtcaggg agtgggagga cctagccata aagcaagggt gttggctgag 
    1081 gcaatgagcc aagcaaacac caatataatg atacagagag gcaattttaa aggctctaaa 
    1141 agacctatta aatgtttcaa ctgtggcaag gaagggcaca tagccaaaaa ttgcagggcc 
    1201 cctaggaaaa agggctgttg gaaatgtgga aaggagggac accaaatgaa agactgtact 
    1261 gaaaggcagg ttaatttttt agggaagctt tggccttccc acaaggggag gccagggaat 
    1321 tttcttcaga gcagaccgga gccaacagcc ccaccagcag agagcttcag gttcgaggag 
    1381 acaaccccca ccctgaagcc ggagccaaca gacagggaac ccttaacttc cctcaaatca 
    1441 ctctttggca gcgacccctt gtctcaa
//
last modified: Tue May 31 10:56 2022


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