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LOCUS KT124425 1467 bp RNA linear VRL 27-JUL-2015
DEFINITION HIV-1 isolate 2005-M0 from India gag protein (gag) and pol protein
(pol) genes, partial cds
ACCESSION KT124425
VERSION KT124425.1 GI:902279757
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1467)
Show all sequences for reference 1
AUTHORS Sharma,S., Aralaguppe,S., Saravanan,S., Murugavel,K., Solomon,S.
and Ranga,U.
TITLE Immune Escape in the chronic phase of Subtype C HIV-1 infection in
the Indian Clinical cohort
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1467)
Show all sequences for reference 2
AUTHORS Sharma,S., Aralaguppe,S., Murugavel,K., Solomon,S. and Ranga,U.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2015) Molecular Biology and Genetics Unit,
JNCASR, Sri Ram Pura Cross, Bangalore, Karnataka 560064, India
REFERENCE 3
Show all sequences for reference 3
AUTHORS Sharma,S., Aralaguppe,S.G., Abrahams,M.-R., Williamson,C., Gray,C.,
Balakrishnan,P., Saravanan,S., Murugavel,K.G., Solomon,S. and
Ranga,U.
TITLE The PTAP sequence duplication in HIV-1 subtype C Gag p6 in
drug-naive subjects of India and South Africa.
JOURNAL BMC. Infect. Dis.. 17(1); 95 (2017)
PUBMED 28118816
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code NLR2005 Patient sex F
Patient age 35 Culture method Uncultured Sample tissue plasma Viral
Load 5713 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1467
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2005-M0"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="India"
/collection_date="26-Sep-2011"
/subtype="C"
gene 1..>1467
/gene="gag"
CDS 1..>1467
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AKR75166.1"
/db_xref="GI:902279758"
/translation="MGARASVLRGEKLDKWERIRLRPGGRKHYMLKHIVWASRELDRF
ALNPSLLETAEGCKQIMQQLQPSLQTGTEEIKSLFNTVATLYCVHNGIEVRDTKEALD
QIEEEQNKSQQKTQQAADGKGSQNYPIVQNLQGQMVHQPISPRTLNAWVKVIEEKAFS
PEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPN
VPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPVPVGDIYKRWIILGLNKIVRMYSPTS
ILDIKQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKTILRALGP
GATLEEMMTACQGVGGPSHKARVLAEAMSQANTNIMIQRGNFKGSKRPIKCFNCGKEG
HIAKNCRAPRKKGCWKCGKEGHQMKDCTERQVNFLGKLWPSHKGRPGNFLQSRPEPTA
PPAESFRFEETTPTLKPEPTDREPLTSLKSLFGSDPLSQ"
gene <1275..>1467
/gene="pol"
CDS <1275..>1467
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AKR75167.1"
/db_xref="GI:902279759"
/translation="FFREALAFPQGEAREFSSEQTGANSPTSRELQVRGDNPHPEAGA
NRQGTLNFPQITLWQRPLVS"
BASE COUNT 532 a 290 c 356 g 289 t
ORIGIN
1 atgggtgcga gagcgtcagt attaagaggc gaaaaattag ataaatggga aagaattagg
61 ttaaggccag ggggaaggaa acattatatg ctaaaacaca tagtatgggc aagcagggag
121 ctggacagat ttgcacttaa ccctagcctt ttagagacag cagaaggctg taaacaaatc
181 atgcaacagc tacaaccatc tcttcagaca ggaacagagg aaattaagtc attattcaac
241 acagtagcaa ctctctattg tgtacataat gggatagagg tacgagacac caaggaagcc
301 ttagaccaga tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggctgctgac
361 gggaagggta gtcaaaatta tcctatagtg cagaacctcc aagggcaaat ggtacaccaa
421 cccatatcac ctagaacttt gaatgcatgg gtaaaagtaa tagaggagaa ggcttttagc
481 ccagaggtga tacccatgtt tacagcatta tcagaaggag ccaccccaca agatttaaac
541 accatgttaa atacagtagg gggacatcaa gcagctatgc aaatgttaaa agataccatt
601 aatgaagaag ctgcagaatg ggatagatta catccagtac atgcagggcc taatgtacca
661 ggccaaatga gagaaccaag ggggagtgac atagcaggaa ctactagtac ccttcaggaa
721 caaatagcat ggatgacaag taacccacct gttccagtgg gagacatcta taaaagatgg
781 ataattctgg gattaaataa aatagtaaga atgtatagcc ctaccagcat tttggacata
841 aaacaagggc caaaggaacc ctttagagac tatgtagacc ggttctttaa aactttaaga
901 gctgaacaag ctacacaaga ggtaaaaaat tggatgacag acaccttgtt agtccaaaat
961 gcgaacccag attgtaagac cattttaaga gcattaggac caggggctac attagaagag
1021 atgatgacag catgtcaggg agtgggagga cctagccata aagcaagggt gttggctgag
1081 gcaatgagcc aagcaaacac caatataatg atacagagag gcaattttaa aggctctaaa
1141 agacctatta aatgtttcaa ctgtggcaag gaagggcaca tagccaaaaa ttgcagggcc
1201 cctaggaaaa agggctgttg gaaatgtgga aaggagggac accaaatgaa agactgtact
1261 gaaaggcagg ttaatttttt agggaagctt tggccttccc acaaggggag gccagggaat
1321 tttcttcaga gcagaccgga gccaacagcc ccaccagcag agagcttcag gttcgaggag
1381 acaaccccca ccctgaagcc ggagccaaca gacagggaac ccttaacttc cctcaaatca
1441 ctctttggca gcgacccctt gtctcaa
//
last modified: Tue May 31 10:56 2022