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LOCUS	    KM350820		    2633 bp    RNA     linear	VRL 13-DEC-2014
DEFINITION  Simian immunodeficiency virus isolate 5p263.03Oct2012.p5e7 from USA
	    nonfunctional envelope glycoprotein (env) gene, complete sequence
ACCESSION   KM350820
VERSION     KM350820.1 GI:730225261
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2633)
            Show all sequences for reference 1
  AUTHORS   Vaccari,M., Gordon,S.N., Fourati,S., Schifanella,L.,
	    Liyanage,N.P.M., Cameron,M., Keele,B.F., Shen,X., Tomaras,G.D.,
	    Billings,E., Rao,M., Chung,A.W., Dowell,K.G., Bailey-Kellogg,C.,
	    Brown,E.P., Ackerman,M.E., Vargas-Inchaustegui,D.A., Whitney,S.,
	    Doster,M.N., Binello,N., Pegu,P., Montefiori,D.C., Foulds,K.,
	    Quinn,D.S., Donaldson,M., Liang,F., Lore,K., Roederer,M.,
	    Koup,R.A., McDermott,A., Ma,Z.-M., Miller,C.J., Phan,T.B.,
	    Forthal,D.N., Blackburn,M., Caccuri,F., Bissa,M., Ferrari,G.,
	    Kalyanaraman,V., Ferrari,M.G., Thompson,D.V., Robert-Guroff,M.,
	    Ratto-Kim,S., Kim,J.H., Michael,N.L., Phogat,S., Barnett,S.W.,
	    Tartaglia,J., Venzon,D., Stablein,D.M., Alter,G., Sekaly,R.-P. and
	    Franchini,G.
  TITLE     Adjuvant-dependent innate and adaptive immune signatures of risk of
	    SIVmac251 acquisition.
  JOURNAL   Nat. Med.. 22(7); 762-70 (2016)
  PUBMED    27239761
REFERENCE   2 (bases 1 to 2633)
            Show all sequences for reference 2
  AUTHORS   Vaccari,M., Keele,B.F. and Franchini,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-AUG-2014) AIDS and Cancer Virus Program, Frederick
	    National Lab, 1050 Boyles Street, Frederick, MD 21702, USA
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 5.0
	    Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2633
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="5p263.03Oct2012.p5e7"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /note="SIVmac251"
     gene	     1..2633
		     /gene="env"
     misc_feature    1..2633
		     /gene="env"
		     /note="nonfunctional envelope glycoprotein due to
		     mutation"
BASE COUNT	837 a	 501 c	  635 g    660 t
ORIGIN
       1 atgggatgtc ttgggaatca gctgcttatc gccatcttgc ttttaagtgt ctatgggatc 
      61 tattgtactc aatatgtcac aatcttttat ggtgtaccag cttggaggaa tgcgacaatt 
     121 cccctcttct gtgcaaccaa gaatagggat acttggggaa caactcagtg cctaccagat 
     181 aatggtgatt attcagaatt ggccattaat gttacagaaa gctttgatgc ttgggagaat 
     241 acagtcacag aacaggcaat agaggatgta tggcaactct ttgagacctc aataaagcct 
     301 tgtgtaaaat tatccccatt atgcattact atgagatgca ataaaagtga gacagataaa 
     361 tggggattga caaaatcatc aacaacaaca gcaacaccaa cagcaacaac atcaacgaca 
     421 gcatcagcaa aaatagacat ggtcaatgag actagttctt gtataactca tgataattgc 
     481 acaggcttgg aacaagagca aatgataggc tgtaaattca acatgacagg gttaaaaaga 
     541 gacaagacaa aaatgaaact tggtactcta cagatttggt ttgtgaacaa gggaatagca 
     601 ctgataatga aagtagatgt tacatgaatc actgtaacac ttctattatc caagagtctt 
     661 gtgacaagca ttattgggat actattagat ttaggtattg tgcacctcca ggttatgctt 
     721 tgcttagatg taatgacaca aattattcag gctttatgcc taaatgttct aaggtggtgg 
     781 tctcttcatg cacaaggatg atggagacac agacttctac ttggtttggc tttaatggaa 
     841 ctagagcaga aaatagaact tatatttact ggcatggtag ggataatagg actataatta 
     901 gtttaaataa gtattataat ctaacaatga aatgtagaag accaggaaat aagacagttt 
     961 taccagtcac cattatgtct ggattggttt tccactcaca accagtcaat gagaggccaa 
    1021 accaggcatg gtgttggttt ggaggaaatt ggaaggatgc aataaaagag gtgaagcaga 
    1081 ccattgtcaa acatcccagg tatactggaa ctaacaatac tgataaaatc aatttgacgg 
    1141 ctcctagagg aggagatccg gaagttacct tcatgtggac aaattgcaga ggagagttcc 
    1201 tctactgtaa aatgaattgg tttctaaatt gggtagaaga tagggatgta actacccaga 
    1261 ggccaaagga acggcataga aggaattacg tgccatgtca tattagacaa ataatcaaca 
    1321 cttggcataa agtaggcaaa aatgtttatt tgcctccaag agagggagac ctcacgtgta 
    1381 actccacagt gaccagtctc atagcaaaca tagattggac tgatggaaac caaactaata 
    1441 tcaccatgag tgcagaggtg gcagaactgt atcgattgga attgggagat tataaattag 
    1501 tagagatcac tccaattggc ttggccccca cagatgtgaa gaggtacact actggtggca 
    1561 cctcaagaaa taaaagaggg gtctttgtgc tagggttctt gggttttctc gcaacggcag 
    1621 gttctgcaat gggcgcggcg tcgttgacgc tgaccgctca gtcccggact ttattggctg 
    1681 ggatagtgca gcaacagcaa cagctgttgg acgtggtcaa gagacaacaa gaattgttgc 
    1741 gactgaccgt ctggggaaca aagaacctcc agactagggt cactgccatc gagaagtact 
    1801 taaaggacca ggcgcagctg aatgcttggg gatgtgcgtt tagacaagtc tgccacacta 
    1861 ctgtaccatg gccaaatgca agtctaacac caaattggaa caatgaagag tgggagcgaa 
    1921 aggttgactt cttggaggaa aatataacag ctctcctaga agaggcgcaa attcaacaag 
    1981 agaagaacat gtatgaatta caaaagttga acagctggga tgtgtttggc aattggtttg 
    2041 accttgcttc ttggataagg tatatacaat atggaattta tatagttgta ggagtaatac 
    2101 tgttaagaat agtgatctat atagtacaaa tgctagctaa gttaaggcag gggtataggc 
    2161 cagtgttctc ttccccaccc tcttatttcc agcagatcca tacccaacag gacccggcac 
    2221 tgccaaccag agaaggcaaa gaaggagacg gtggagaagg cggtggcaac agctcctggc 
    2281 cttggcagat agaatatatt catttcctga tccgccaact gatacgcctc ttgacttggc 
    2341 tattcagcaa ctgcagaacc ttgctatcga gagtatacca gatcctccaa ccaatactcc 
    2401 aggggctctc tgcgacccta cagagaattc gagaagtcct caggactgaa ctgacctacc 
    2461 tacaatatgg gtggagctat ttccatgagg cggtccaagt cggctggaga tctgcgacag 
    2521 agactcttgc gggcgcgtgg ggagacttat gggagactct taggagaggt ggaagatgga 
    2581 tcctcgcaat ccctaggagg attagacaag ggcttgagct cactctcttg tga
//
last modified: Tue May 31 10:56 2022


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