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LOCUS KM350820 2633 bp RNA linear VRL 13-DEC-2014
DEFINITION Simian immunodeficiency virus isolate 5p263.03Oct2012.p5e7 from USA
nonfunctional envelope glycoprotein (env) gene, complete sequence
ACCESSION KM350820
VERSION KM350820.1 GI:730225261
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2633)
Show all sequences for reference 1
AUTHORS Vaccari,M., Gordon,S.N., Fourati,S., Schifanella,L.,
Liyanage,N.P.M., Cameron,M., Keele,B.F., Shen,X., Tomaras,G.D.,
Billings,E., Rao,M., Chung,A.W., Dowell,K.G., Bailey-Kellogg,C.,
Brown,E.P., Ackerman,M.E., Vargas-Inchaustegui,D.A., Whitney,S.,
Doster,M.N., Binello,N., Pegu,P., Montefiori,D.C., Foulds,K.,
Quinn,D.S., Donaldson,M., Liang,F., Lore,K., Roederer,M.,
Koup,R.A., McDermott,A., Ma,Z.-M., Miller,C.J., Phan,T.B.,
Forthal,D.N., Blackburn,M., Caccuri,F., Bissa,M., Ferrari,G.,
Kalyanaraman,V., Ferrari,M.G., Thompson,D.V., Robert-Guroff,M.,
Ratto-Kim,S., Kim,J.H., Michael,N.L., Phogat,S., Barnett,S.W.,
Tartaglia,J., Venzon,D., Stablein,D.M., Alter,G., Sekaly,R.-P. and
Franchini,G.
TITLE Adjuvant-dependent innate and adaptive immune signatures of risk of
SIVmac251 acquisition.
JOURNAL Nat. Med.. 22(7); 762-70 (2016)
PUBMED 27239761
REFERENCE 2 (bases 1 to 2633)
Show all sequences for reference 2
AUTHORS Vaccari,M., Keele,B.F. and Franchini,G.
TITLE Direct Submission
JOURNAL Submitted (05-AUG-2014) AIDS and Cancer Virus Program, Frederick
National Lab, 1050 Boyles Street, Frederick, MD 21702, USA
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 5.0
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2633
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="5p263.03Oct2012.p5e7"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
/note="SIVmac251"
gene 1..2633
/gene="env"
misc_feature 1..2633
/gene="env"
/note="nonfunctional envelope glycoprotein due to
mutation"
BASE COUNT 837 a 501 c 635 g 660 t
ORIGIN
1 atgggatgtc ttgggaatca gctgcttatc gccatcttgc ttttaagtgt ctatgggatc
61 tattgtactc aatatgtcac aatcttttat ggtgtaccag cttggaggaa tgcgacaatt
121 cccctcttct gtgcaaccaa gaatagggat acttggggaa caactcagtg cctaccagat
181 aatggtgatt attcagaatt ggccattaat gttacagaaa gctttgatgc ttgggagaat
241 acagtcacag aacaggcaat agaggatgta tggcaactct ttgagacctc aataaagcct
301 tgtgtaaaat tatccccatt atgcattact atgagatgca ataaaagtga gacagataaa
361 tggggattga caaaatcatc aacaacaaca gcaacaccaa cagcaacaac atcaacgaca
421 gcatcagcaa aaatagacat ggtcaatgag actagttctt gtataactca tgataattgc
481 acaggcttgg aacaagagca aatgataggc tgtaaattca acatgacagg gttaaaaaga
541 gacaagacaa aaatgaaact tggtactcta cagatttggt ttgtgaacaa gggaatagca
601 ctgataatga aagtagatgt tacatgaatc actgtaacac ttctattatc caagagtctt
661 gtgacaagca ttattgggat actattagat ttaggtattg tgcacctcca ggttatgctt
721 tgcttagatg taatgacaca aattattcag gctttatgcc taaatgttct aaggtggtgg
781 tctcttcatg cacaaggatg atggagacac agacttctac ttggtttggc tttaatggaa
841 ctagagcaga aaatagaact tatatttact ggcatggtag ggataatagg actataatta
901 gtttaaataa gtattataat ctaacaatga aatgtagaag accaggaaat aagacagttt
961 taccagtcac cattatgtct ggattggttt tccactcaca accagtcaat gagaggccaa
1021 accaggcatg gtgttggttt ggaggaaatt ggaaggatgc aataaaagag gtgaagcaga
1081 ccattgtcaa acatcccagg tatactggaa ctaacaatac tgataaaatc aatttgacgg
1141 ctcctagagg aggagatccg gaagttacct tcatgtggac aaattgcaga ggagagttcc
1201 tctactgtaa aatgaattgg tttctaaatt gggtagaaga tagggatgta actacccaga
1261 ggccaaagga acggcataga aggaattacg tgccatgtca tattagacaa ataatcaaca
1321 cttggcataa agtaggcaaa aatgtttatt tgcctccaag agagggagac ctcacgtgta
1381 actccacagt gaccagtctc atagcaaaca tagattggac tgatggaaac caaactaata
1441 tcaccatgag tgcagaggtg gcagaactgt atcgattgga attgggagat tataaattag
1501 tagagatcac tccaattggc ttggccccca cagatgtgaa gaggtacact actggtggca
1561 cctcaagaaa taaaagaggg gtctttgtgc tagggttctt gggttttctc gcaacggcag
1621 gttctgcaat gggcgcggcg tcgttgacgc tgaccgctca gtcccggact ttattggctg
1681 ggatagtgca gcaacagcaa cagctgttgg acgtggtcaa gagacaacaa gaattgttgc
1741 gactgaccgt ctggggaaca aagaacctcc agactagggt cactgccatc gagaagtact
1801 taaaggacca ggcgcagctg aatgcttggg gatgtgcgtt tagacaagtc tgccacacta
1861 ctgtaccatg gccaaatgca agtctaacac caaattggaa caatgaagag tgggagcgaa
1921 aggttgactt cttggaggaa aatataacag ctctcctaga agaggcgcaa attcaacaag
1981 agaagaacat gtatgaatta caaaagttga acagctggga tgtgtttggc aattggtttg
2041 accttgcttc ttggataagg tatatacaat atggaattta tatagttgta ggagtaatac
2101 tgttaagaat agtgatctat atagtacaaa tgctagctaa gttaaggcag gggtataggc
2161 cagtgttctc ttccccaccc tcttatttcc agcagatcca tacccaacag gacccggcac
2221 tgccaaccag agaaggcaaa gaaggagacg gtggagaagg cggtggcaac agctcctggc
2281 cttggcagat agaatatatt catttcctga tccgccaact gatacgcctc ttgacttggc
2341 tattcagcaa ctgcagaacc ttgctatcga gagtatacca gatcctccaa ccaatactcc
2401 aggggctctc tgcgacccta cagagaattc gagaagtcct caggactgaa ctgacctacc
2461 tacaatatgg gtggagctat ttccatgagg cggtccaagt cggctggaga tctgcgacag
2521 agactcttgc gggcgcgtgg ggagacttat gggagactct taggagaggt ggaagatgga
2581 tcctcgcaat ccctaggagg attagacaag ggcttgagct cactctcttg tga
//
last modified: Tue May 31 10:56 2022